ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3f12 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ------------QCMR 158 K A KK+C E +E ++ CE + ++ A K+QC + QC Sbjct: 976 KRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAKKLKEAAEQKQCEE 1034 Query: 159 YGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHP 338 L E + E +Q C+ + + K A KKQC +E ++E Sbjct: 1035 RAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQC-EERAKKEKEAA 1091 Query: 339 SRAACERKCSHWRDPTRKERC 401 + CE + ++ K++C Sbjct: 1092 EKKQCEERAKKLKEAAEKKQC 1112 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/135 (21%), Positives = 52/135 (38%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 194 K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1072 KEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK------------ 1118 Query: 195 XIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 374 E+ AE+ C+ + K A KK+C E ++E + C Sbjct: 1119 --EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQKCAEAAKKE 1167 Query: 375 RDPTRKERCVQTCMR 419 ++ K++C + R Sbjct: 1168 KEAAEKKKCAEAAKR 1182 Score = 37.4 bits (85), Expect = 0.039 Identities = 26/130 (20%), Positives = 50/130 (38%) Frame = +3 Query: 30 KKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERP 209 KK+C +E ++E + CE+ ++ A K++C + Sbjct: 380 KKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE--------------------- 417 Query: 210 HAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTR 389 A + E + C+ ++ K A KK+C E ++E R CE + Sbjct: 418 -AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEKEAAERKKCEELAKKIKKAAE 475 Query: 390 KERCVQTCMR 419 K++C +T + Sbjct: 476 KKKCEETAKK 485 Score = 35.4 bits (80), Expect = 0.15 Identities = 26/138 (18%), Positives = 50/138 (36%) Frame = +3 Query: 6 QHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXX 185 + K A KK+C +E +E R CE + A K++C + Sbjct: 580 KERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKE------------- 625 Query: 186 XXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC 365 A + E + + C + K A KK+C + ++E + CE+ Sbjct: 626 ---------AAKKEKEAAEREKCGELAKKIKKAAEKKKC-KKLAKKEKETAEKKKCEKAA 675 Query: 366 SHWRDPTRKERCVQTCMR 419 ++ K++C + + Sbjct: 676 KKRKEAAEKKKCAEAAKK 693 Score = 34.3 bits (77), Expect = 0.33 Identities = 26/135 (19%), Positives = 50/135 (37%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 194 K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 519 KETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK------------ 565 Query: 195 XIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 374 R A E + C+ + K A KK+C +E ++E R CE Sbjct: 566 ---RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKI 614 Query: 375 RDPTRKERCVQTCMR 419 + K++C + + Sbjct: 615 KKAAEKKKCKEAAKK 629 Score = 32.3 bits (72), Expect = 1.3 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 194 K A KK+C E +E + CE ++ A +++C + + Sbjct: 679 KEAAEKKKCA-EAAKKEKEAAEKKKCEEAAKKEKEAAERKKCEELAKKIKKAAEKKKCKK 737 Query: 195 XIERPHAEEVEVDDQSNDSCDH------KCQH--HKVPARKKQCVDECHRREHHHPSRAA 350 ++ A E + N KC+ K A KK+C E ++E + Sbjct: 738 LAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELAKKKAAEKKKC-KEAAKKEKEAAEKKK 796 Query: 351 CERKCSHWRDPTRKERCVQTCMR 419 CE+ ++ K++C +T + Sbjct: 797 CEKTAKKRKEEAEKKKCEKTAKK 819 Score = 30.8 bits (68), Expect = 3.6 Identities = 25/135 (18%), Positives = 51/135 (37%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 194 K A KK+C ++ +A C+ ++ K++C + + Sbjct: 343 KEEAEKKKCAALAKKQKEEDEKKA-CKELAKKKKEADEKKKCEEAANK------------ 389 Query: 195 XIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 374 E+ AE+ + C+ + K A KK+C +E ++E R CE + Sbjct: 390 --EKKAAEKKK--------CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 375 RDPTRKERCVQTCMR 419 + K++C + + Sbjct: 439 KKAAEKKKCKEAAKK 453
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = +3 Query: 21 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 161 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 162 GLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 341 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 342 RAACERK 362 R E + Sbjct: 158 RREREEE 164 Score = 34.7 bits (78), Expect = 0.25 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Frame = +3 Query: 90 CERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQ 269 C R+C W +KEQ QQC + RP E + + C +C+ Sbjct: 44 CRRRCE-WDTRGQKEQ--QQCEESCKSQYGEKDQQQRHRP-----EDPQRRYEECQQECR 95 Query: 270 HHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 413 + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 96 QQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Frame = +3 Query: 3 CQHH-----KVPARKKQCVDECHSREHHHPSRASCERK 101 CQ H + P RK+QCV EC R +P R E + Sbjct: 127 CQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 43.1 bits (100), Expect = 7e-04 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Frame = +3 Query: 27 RKKQCVDECHSREHHHPSRASCERKCS---------HWRDPARKEQ-CVQQCMRYGLNLX 176 R + C C + CE + DP R+ Q C Q C + L Sbjct: 40 RYEDCRKRCQLETRGQTEQDKCEDRSETQLKEEQQRDGEDPQRRYQDCRQHCQQEERRLR 99 Query: 177 XXXXXXXIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAAC 353 E+ ++ + D+ C +CQ + P RK+QCV EC + P + Sbjct: 100 PHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGER 159 Query: 354 ERKCSHWRDPTRKE 395 E K WR+ +E Sbjct: 160 ENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = +3 Query: 252 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 410 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 411 C 413 C Sbjct: 146 C 146 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 21 PARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 134 P RK+QCV EC + P + E K WR+ +E Sbjct: 136 PERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 38.5 bits (88), Expect = 0.017 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%) Frame = +3 Query: 15 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 194 K A KK+C E +E + C ++ A K++C + + Sbjct: 117 KEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAE 175 Query: 195 XIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC 365 ++ E+ +Q C + K A KK+C +E ++E + CE + Sbjct: 176 AAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAAEKKKCEERA 234 Query: 366 SHWRDPTRKERCVQTCMR 419 ++ K++C + + Sbjct: 235 KKEKEAAEKKKCAEAAKK 252
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = +3 Query: 90 CERKC-SHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKC 266 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 267 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 398 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +3 Query: 63 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQS 242 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 243 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 362 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>MACA1_RHOOP (O84992) Maleylacetate reductase 1 (EC 1.3.1.32) (Maleylacetate| reductase I) Length = 357 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -3 Query: 147 AARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRRRTVSSSPE--LYDV 7 AART L Y S TP LG+ G T R T++ PE +YDV Sbjct: 109 AARTGVDQVILPTTYAGSEVTPVLGETVEGRKTTRSTLAVLPETVIYDV 157
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 256 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 372 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,317,689 Number of Sequences: 219361 Number of extensions: 1397866 Number of successful extensions: 4623 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3878 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4595 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
