>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 519 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 415
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 519 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 415
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 25  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>DUS_AQUAE (O67533) Probable tRNA-dihydrouridine synthase (EC 1.-.-.-)|
          Length = 316

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +2

Query: 11  GIPRHPXTRKGVASDEMLRGVENKHRSGDSQIGQPFKLPAESMSRQETTWRTETS**PEE 190
           GIP     R G   DE+ R VE   ++G S I    +   +  S +    R +     E 
Sbjct: 132 GIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHARTAKQGFSGKALWHRIK-----EA 186

Query: 191 KKAKAIPVVAASEMGAA*TVKTGLWESNTSVVLLGEA 301
           KK  ++P++ + ++ +   ++    E+    V++G A
Sbjct: 187 KKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRA 223

>RBPSL_HUMAN (Q9UBG7) Recombining binding protein suppressor of hairless-like|
           protein (Transcription factor RBP-L)
          Length = 516

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 562 RSEITFPLPLLGSSARFHVLFHYPLGVLFTFPSRYYFAIGHPGV 431
           R+ IT P+ L+ +   F     YP    FT+   Y    GHPGV
Sbjct: 449 RAPITIPMSLVRADGLF-----YPSAFSFTYTPEYSVRPGHPGV 487


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,105,972
Number of Sequences: 219361
Number of extensions: 1769813
Number of successful extensions: 3720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)