Clone Name
basd2p19
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AY106062.1| Zea mays PCO084327 mRNA sequence
454
e-124
2 gb|BT024030.1| Zea mays clone EL01N0422F01 mRNA sequence
377
e-101
3 ref|NM_185313.2| Oryza sativa (japonica cultivar-group), mRNA
359
7e-96
4 dbj|AK102494.1| Oryza sativa (japonica cultivar-group) cDNA clon...
359
7e-96
5 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
250
5e-63
6 dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D...
250
5e-63
7 dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic D...
117
5e-23
8 ref|NM_197271.1| Oryza sativa (japonica cultivar-group) putative...
101
3e-18
9 gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 gen...
101
3e-18
10 gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen...
101
3e-18
11 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
101
3e-18
12 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
101
3e-18
13 ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA
88
4e-14
14 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
88
4e-14
15 dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D...
88
4e-14
16 dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D...
88
4e-14
17 ref|XM_549803.1| Oryza sativa (japonica cultivar-group), mRNA
68
4e-08
18 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
19 dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
20 dbj|AK101455.1| Oryza sativa (japonica cultivar-group) cDNA clon...
68
4e-08
21 dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
22 gb|AY105556.1| Zea mays PCO105129 mRNA sequence
60
1e-05
23 ref|NM_118656.3| Arabidopsis thaliana SKS1 (SKU5 SIMILAR 1); cop...
42
2.3
24 ref|NM_124527.3| Arabidopsis thaliana copper ion binding AT5G514...
42
2.3
25 ref|XM_446826.1| Candida glabrata CBS138, CAGL0H00638g partial mRNA
42
2.3
26 ref|XM_504499.1| Yarrowia lipolytica CLIB122, YALI0E28270g predi...
42
2.3
27 gb|AY091230.1| Arabidopsis thaliana putative pollen-specific pro...
42
2.3
28 gb|AY074379.1| Arabidopsis thaliana putative Pollen-specific pro...
42
2.3
29 emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp...
42
2.3
30 emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, ...
42
2.3
31 emb|AL035396.1|ATF24A6 Arabidopsis thaliana DNA chromosome 4, BA...
42
2.3
32 emb|AJ292743.1|PCR292743 Petroselinum crispum mRNA for common pl...
42
2.3
33 gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete ...
42
2.3
34 emb|BX830464.1|CNS0A1MM Arabidopsis thaliana Full-length cDNA Co...
42
2.3
35 gb|BT004990.1| Arabidopsis thaliana clone U20700 unknown protein...
42
2.3
36 gb|BT004129.1| Arabidopsis thaliana clone RAFL15-06-D22 (R20700)...
42
2.3
37 dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
42
2.3
38 emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ...
42
2.3
39 emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chrom...
40
8.9
40 emb|AL670005.1|NCB11H24 Neurospora crassa DNA linkage group V BA...
40
8.9
41 emb|AL513444.1|NCB11N2 Neurospora crassa DNA linkage group V BAC...
40
8.9
42 dbj|AK140846.1| Mus musculus 16 days embryo head cDNA, RIKEN ful...
40
8.9
43 gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, comple...
40
8.9
>gb| AY106062.1 | Zea mays PCO084327 mRNA sequence
Length = 1981
Score = 454 bits (229), Expect = e-124
Identities = 511/605 (84%)
Strand = Plus / Plus
Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64
||||| ||||||||||| || ||||| || ||||||||| | |||| ||| ||||||
Sbjct: 788 ttccgtgtccacaatgttggtgtctccacaagcttgaacttacggattcagaatcacaac 847
Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124
|||||| | || || ||||| || || ||||||||||||||||||||||| || ||||||
Sbjct: 848 atggcccttgttgaaacagaaggttcatacacgatgaagcagaatttcactaatctcgac 907
Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184
||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct: 908 atccacgtgggccagtcttactcatttctggtcactatggatcagaacgcaagcagtgat 967
Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244
||||||||||||||||| || |||| |||||||| ||||| |||||||| || ||||||
Sbjct: 968 tattacatcgtggccagtgctaggtttgtgaacgaatcgctttggaccagagtcaccggt 1027
Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304
||||||||| | || || || ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 1028 gttgcaattttgcaatattcaaattcaaagggaaaagcatctggtcctcttcctgatcca 1087
Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364
|| ||||||||||| ||||||| ||| || |||||||||||||| || ||||||||||||
Sbjct: 1088 ccaaatgatgagtatgacaaaactttttcaatgaaccaggcacgttccatcaggatgaac 1147
Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1148 gtgagcactggtgctgctcgtccgaatcctcaaggatcatttcactatgggtctatcaat 1207
Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484
|||| |||||| |||||| |||||||| || ||||||| ||||||||| || || |||
Sbjct: 1208 gtgagccaagtttacaagctgaggaatgaaccacctgttatcatcaatgggaagaaacgg 1267
Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544
|| ||||||| |||||||| ||||| || || | ||||| | ||| | ||||||||
Sbjct: 1268 actacactgagtggtatctcttattccccacccgacactcctctaaggttggcagatctg 1327
Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604
||||| ||||| || ||||||||||| |||||||| | |||||| ||||||||||||
Sbjct: 1328 tacgacaagaaggatgtctacacacttgacttccctacaatgccaattgatggaccgcca 1387
Query: 605 gtgat 609
|||||
Sbjct: 1388 gtgat 1392
>gb| BT024030.1 | Zea mays clone EL01N0422F01 mRNA sequence
Length = 2246
Score = 377 bits (190), Expect = e-101
Identities = 436/518 (84%)
Strand = Plus / Plus
Query: 92 tacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactccttt 151
|||||||||||||||||||| || || ||||||||||| ||| | |||| ||||| |||
Sbjct: 859 tacacgatgaagcagaattttactaatctcgacatccacgtgagccagtattactcattt 918
Query: 152 ctggtcaccatggaccagaatgcaagcagtgactattacatcgtggccagccctcggttc 211
|| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| | || |
Sbjct: 919 ctagtcactatggatcagaacgcaagcagtgattattacatcgtggccagtgataggctt 978
Query: 212 gtgaacgagtcgctctggaccagggttaccggtgttgcaattcttcactactcgaattca 271
|||||||| | ||| |||||||| || ||||||||||||||| | || || || ||||||
Sbjct: 979 gtgaacgaatagctttggaccagagtcaccggtgttgcaattttgcaatattcaaattca 1038
Query: 272 aagggcaaggcatctggtccgcttcctgacccaccgaatgatgagtacgacaaaagtttc 331
||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||| |||
Sbjct: 1039 aagggaaaagcatctggtcctcttcctgatccaccaaatgatgagtatgacaaaactttt 1098
Query: 332 tccatgaaccaggcacggtcaatcaggatgaacgtgaccactggtgctgctcgtccgaat 391
|| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct: 1099 tcaatgaaccaggcacgttccatcaggatgaacgtgagcactggtgctgctcgtccgaat 1158
Query: 392 cctcaaggatcatttcactatgggcaaatcaacgtgacccaagtgtacaagttgaggaat 451
|||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||||
Sbjct: 1159 cctcaaggatcatttcactatgggtctatcaatgtgagccaagtttacaagctgaggaat 1218
Query: 452 atgccccctgttaccatcaatggcaaaaagcggacgacactgaacggtatctcctattca 511
|| ||||||| ||||||||| || || ||||| ||||||| |||||||| |||||
Sbjct: 1219 gaaccacctgttatcatcaatgggaagaaacggactacactgagtggtatctcttattcc 1278
Query: 512 ccgcctgctactccattgaggcttgcagatctctacgaaaagaaagaagtctacacactc 571
|| || | ||||| | ||| | |||||||| ||||| ||||| || |||||||||||
Sbjct: 1279 ccacccgacactcctctaaggttggcagatctgtacgacaagaaggatgtctacacactt 1338
Query: 572 gacttcccaatgatgccatctgatggaccgccggtgat 609
|||||||| | |||||| |||||||||||| |||||
Sbjct: 1339 gacttccctacaatgccaattgatggaccgccagtgat 1376
>ref| NM_185313.2 | Oryza sativa (japonica cultivar-group), mRNA
Length = 2223
Score = 359 bits (181), Expect = 7e-96
Identities = 499/605 (82%)
Strand = Plus / Plus
Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64
||||| |||||||||||||| | ||||||||||||||| | ||||| ||| ||||||
Sbjct: 749 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 808
Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124
||||| | || || || ||||| || ||||| ||||||||||||||||| || || |||
Sbjct: 809 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 868
Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184
||||||||||| ||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct: 869 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 928
Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244
|| ||||| |||||||| || |||| || || || || || ||||||| |||||||||
Sbjct: 929 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 988
Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304
|||||||| | || || || ||||||||||| || || ||||| || |||||||| |||
Sbjct: 989 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 1048
Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364
|| ||||||||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct: 1049 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcaggatgaat 1108
Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1109 gtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatggctctatcaac 1168
Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484
|| | ||| || |||||| | |||||| || |||||||| ||||| || ||||| |||
Sbjct: 1169 gtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgggaaaaaacgg 1228
Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544
|| ||||||| |||||||| | ||| || |||| ||| || ||||| | || ||||||
Sbjct: 1229 actacactgagtggtatctctttttccccacctgatacccctatgaggttggcggatctc 1288
Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604
|| || ||||||| ||| ||||| || |||||||| | |||||| ||||||||||||
Sbjct: 1289 tatgacaagaaaggagtgtacacgcttgacttccctactatgccaattgatggaccgcca 1348
Query: 605 gtgat 609
|||||
Sbjct: 1349 gtgat 1353
>dbj| AK102494.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033095A13, full
insert sequence
Length = 2224
Score = 359 bits (181), Expect = 7e-96
Identities = 499/605 (82%)
Strand = Plus / Plus
Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64
||||| |||||||||||||| | ||||||||||||||| | ||||| ||| ||||||
Sbjct: 750 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 809
Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124
||||| | || || || ||||| || ||||| ||||||||||||||||| || || |||
Sbjct: 810 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 869
Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184
||||||||||| ||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct: 870 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 929
Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244
|| ||||| |||||||| || |||| || || || || || ||||||| |||||||||
Sbjct: 930 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 989
Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304
|||||||| | || || || ||||||||||| || || ||||| || |||||||| |||
Sbjct: 990 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 1049
Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcaggatgaac 364
|| ||||||||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct: 1050 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcaggatgaat 1109
Query: 365 gtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1110 gtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatggctctatcaac 1169
Query: 425 gtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatggcaaaaagcgg 484
|| | ||| || |||||| | |||||| || |||||||| ||||| || ||||| |||
Sbjct: 1170 gtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgggaaaaaacgg 1229
Query: 485 acgacactgaacggtatctcctattcaccgcctgctactccattgaggcttgcagatctc 544
|| ||||||| |||||||| | ||| || |||| ||| || ||||| | || ||||||
Sbjct: 1230 actacactgagtggtatctctttttccccacctgatacccctatgaggttggcggatctc 1289
Query: 545 tacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctgatggaccgccg 604
|| || ||||||| ||| ||||| || |||||||| | |||||| ||||||||||||
Sbjct: 1290 tatgacaagaaaggagtgtacacgcttgacttccctactatgccaattgatggaccgcca 1349
Query: 605 gtgat 609
|||||
Sbjct: 1350 gtgat 1354
>dbj| AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 250 bits (126), Expect = 5e-63
Identities = 297/354 (83%)
Strand = Plus / Minus
Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64
||||| |||||||||||||| | ||||||||||||||| | ||||| ||| ||||||
Sbjct: 298942 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 298883
Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124
||||| | || || || ||||| || ||||| ||||||||||||||||| || || |||
Sbjct: 298882 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 298823
Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184
||||||||||| ||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct: 298822 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 298763
Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244
|| ||||| |||||||| || |||| || || || || || ||||||| |||||||||
Sbjct: 298762 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 298703
Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304
|||||||| | || || || ||||||||||| || || ||||| || |||||||| |||
Sbjct: 298702 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 298643
Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcagg 358
|| ||||||||||||||||||| |||||| |||||||||||||| || ||||||
Sbjct: 298642 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcagg 298589
Score = 117 bits (59), Expect = 5e-23
Identities = 206/255 (80%)
Strand = Plus / Minus
Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414
||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 297880 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 297821
Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474
|||||||| | ||| || |||||| | |||||| || |||||||| ||||| ||
Sbjct: 297820 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 297761
Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534
||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| |
Sbjct: 297760 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 297701
Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594
|| |||||||| || ||||||| ||| ||||| || |||||||| | |||||| |||
Sbjct: 297700 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 297641
Query: 595 tggaccgccggtgat 609
||||||||| |||||
Sbjct: 297640 tggaccgccagtgat 297626
>dbj| AP001129.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0644B06
Length = 194509
Score = 250 bits (126), Expect = 5e-63
Identities = 297/354 (83%)
Strand = Plus / Minus
Query: 5 ttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccacaac 64
||||| |||||||||||||| | ||||||||||||||| | ||||| ||| ||||||
Sbjct: 8895 ttccgtgtccacaatgtgggtatatcgacgagcttgaacttcaggattcagaaccacaat 8836
Query: 65 atggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctcgac 124
||||| | || || || ||||| || ||||| ||||||||||||||||| || || |||
Sbjct: 8835 ttggcccttgttgaaactgagggatcatacacaatgaagcagaatttcacaaatcttgac 8776
Query: 125 atccatgtggggcagtcctactcctttctggtcaccatggaccagaatgcaagcagtgac 184
||||||||||| ||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct: 8775 atccatgtgggacagtcctactcatttttgatcaccatggatcagaatgcaagcagtgac 8716
Query: 185 tattacatcgtggccagccctcggttcgtgaacgagtcgctctggaccagggttaccggt 244
|| ||||| |||||||| || |||| || || || || || ||||||| |||||||||
Sbjct: 8715 tactacattgtggccagtgctaggtttgttaatgaatcactgtggaccaaagttaccggt 8656
Query: 245 gttgcaattcttcactactcgaattcaaagggcaaggcatctggtccgcttcctgaccca 304
|||||||| | || || || ||||||||||| || || ||||| || |||||||| |||
Sbjct: 8655 gttgcaatcttgcagtattcaaattcaaagggaaaagcttctggccctcttcctgatcca 8596
Query: 305 ccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtcaatcagg 358
|| ||||||||||||||||||| |||||| |||||||||||||| || ||||||
Sbjct: 8595 ccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctccatcagg 8542
Score = 117 bits (59), Expect = 5e-23
Identities = 206/255 (80%)
Strand = Plus / Minus
Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414
||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 7833 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 7774
Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474
|||||||| | ||| || |||||| | |||||| || |||||||| ||||| ||
Sbjct: 7773 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 7714
Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534
||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| |
Sbjct: 7713 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 7654
Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594
|| |||||||| || ||||||| ||| ||||| || |||||||| | |||||| |||
Sbjct: 7653 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 7594
Query: 595 tggaccgccggtgat 609
||||||||| |||||
Sbjct: 7593 tggaccgccagtgat 7579
>dbj| AP002842.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0075G19
Length = 163558
Score = 117 bits (59), Expect = 5e-23
Identities = 206/255 (80%)
Strand = Plus / Minus
Query: 355 caggatgaacgtgaccactggtgctgctcgtccgaatcctcaaggatcatttcactatgg 414
||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 162776 caggatgaatgtgagtactggtgctgctcgtccaaatcctcaaggttcatttcactatgg 162717
Query: 415 gcaaatcaacgtgacccaagtgtacaagttgaggaatatgccccctgttaccatcaatgg 474
|||||||| | ||| || |||||| | |||||| || |||||||| ||||| ||
Sbjct: 162716 ctctatcaacgtcagccaggtttacaagctcaggaatgaaccacctgttactatcaacgg 162657
Query: 475 caaaaagcggacgacactgaacggtatctcctattcaccgcctgctactccattgaggct 534
||||| ||||| ||||||| |||||||| | ||| || |||| ||| || ||||| |
Sbjct: 162656 gaaaaaacggactacactgagtggtatctctttttccccacctgatacccctatgaggtt 162597
Query: 535 tgcagatctctacgaaaagaaagaagtctacacactcgacttcccaatgatgccatctga 594
|| |||||||| || ||||||| ||| ||||| || |||||||| | |||||| |||
Sbjct: 162596 ggcggatctctatgacaagaaaggagtgtacacgcttgacttccctactatgccaattga 162537
Query: 595 tggaccgccggtgat 609
||||||||| |||||
Sbjct: 162536 tggaccgccagtgat 162522
Score = 83.8 bits (42), Expect = 7e-13
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 293 cttcctgacccaccgaatgatgagtacgacaaaagtttctccatgaaccaggcacggtca 352
|||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct: 163550 cttcctgatccaccaaatgatgagtacgacaaaactttctcaatgaaccaggcacgctcc 163491
Query: 353 atcagg 358
||||||
Sbjct: 163490 atcagg 163485
>ref| NM_197271.1 | Oryza sativa (japonica cultivar-group) putative ascorbate oxidase
(OSJNBb0015K05.9), mRNA
Length = 1722
Score = 101 bits (51), Expect = 3e-18
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88
||||||||| | ||| | ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 736 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 795
Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148
|| ||||||| | ||||||| | ||||||||| ||| |||| || || ||||||||||||
Sbjct: 796 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 855
Query: 149 tttctggtcaccatggaccagaa 171
|| || ||||||| ||||||||
Sbjct: 856 ttcctcgtcaccaccgaccagaa 878
>gb| AC090870.13 | Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
sequence
Length = 123292
Score = 101 bits (51), Expect = 3e-18
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88
||||||||| | ||| | ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 62593 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 62534
Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148
|| ||||||| | ||||||| | ||||||||| ||| |||| || || ||||||||||||
Sbjct: 62533 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 62474
Query: 149 tttctggtcaccatggaccagaa 171
|| || ||||||| ||||||||
Sbjct: 62473 ttcctcgtcaccaccgaccagaa 62451
>gb| AC091122.10 | Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
sequence
Length = 151991
Score = 101 bits (51), Expect = 3e-18
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88
||||||||| | ||| | ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 146243 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 146184
Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148
|| ||||||| | ||||||| | ||||||||| ||| |||| || || ||||||||||||
Sbjct: 146183 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 146124
Query: 149 tttctggtcaccatggaccagaa 171
|| || ||||||| ||||||||
Sbjct: 146123 ttcctcgtcaccaccgaccagaa 146101
>dbj| AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 101 bits (51), Expect = 3e-18
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88
||||||||| | ||| | ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 18932448 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 18932507
Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148
|| ||||||| | ||||||| | ||||||||| ||| |||| || || ||||||||||||
Sbjct: 18932508 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 18932567
Query: 149 tttctggtcaccatggaccagaa 171
|| || ||||||| ||||||||
Sbjct: 18932568 ttcctcgtcaccaccgaccagaa 18932590
>gb| AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 101 bits (51), Expect = 3e-18
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 29 tcgacgagcttgaacctgaggatccagggccacaacatggccatggtggagacagagggc 88
||||||||| | ||| | ||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 18943702 tcgacgagcctcaacttcaggatccaggggcacaacatggtgctggtggagacggagggc 18943761
Query: 89 tcgtacacgatgaagcagaatttcaccaacctcgacatccatgtggggcagtcctactcc 148
|| ||||||| | ||||||| | ||||||||| ||| |||| || || ||||||||||||
Sbjct: 18943762 tcctacacgacgcagcagaactacaccaacctggacgtccacgtcggccagtcctactcc 18943821
Query: 149 tttctggtcaccatggaccagaa 171
|| || ||||||| ||||||||
Sbjct: 18943822 ttcctcgtcaccaccgaccagaa 18943844
>ref| XM_480151.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 1803
Score = 87.7 bits (44), Expect = 4e-14
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| ||||
Sbjct: 788 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 847
Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213
||||||| |||||||||| |||||| ||||| ||||| ||||| |||||||
Sbjct: 848 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 899
>dbj| AP008214.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 87.7 bits (44), Expect = 4e-14
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| ||||
Sbjct: 3115662 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 3115603
Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213
||||||| |||||||||| |||||| ||||| ||||| ||||| |||||||
Sbjct: 3115602 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 3115551
>dbj| AP005467.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1349_D05
Length = 174478
Score = 87.7 bits (44), Expect = 4e-14
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| ||||
Sbjct: 166385 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 166326
Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213
||||||| |||||||||| |||||| ||||| ||||| ||||| |||||||
Sbjct: 166325 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 166274
>dbj| AP003940.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1066_B03
Length = 115339
Score = 87.7 bits (44), Expect = 4e-14
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||||| |||||| || ||||||||||| || ||||| ||||| || |||| ||||
Sbjct: 75146 agcagaattacaccaatcttgacatccatgttggacagtcatactctttcttggtgacca 75087
Query: 162 tggaccagaatgcaagcagtgactattacatcgtggccagccctcggttcgt 213
||||||| |||||||||| |||||| ||||| ||||| ||||| |||||||
Sbjct: 75086 tggaccaaaatgcaagcactgactactacattgtggcgagcccaaggttcgt 75035
>ref| XM_549803.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 2162
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||| | ||||||| | ||||||||||| || |||||||||||||| || ||||||
Sbjct: 845 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 904
Query: 162 tggaccagaa 171
||||||||||
Sbjct: 905 tggaccagaa 914
>dbj| AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43261740
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||| | ||||||| | ||||||||||| || |||||||||||||| || ||||||
Sbjct: 12564 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 12623
Query: 162 tggaccagaa 171
||||||||||
Sbjct: 12624 tggaccagaa 12633
>dbj| AP003727.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0672D08
Length = 173729
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||| | ||||||| | ||||||||||| || |||||||||||||| || ||||||
Sbjct: 10366 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 10425
Query: 162 tggaccagaa 171
||||||||||
Sbjct: 10426 tggaccagaa 10435
>dbj| AK101455.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033040A20, full
insert sequence
Length = 2162
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||| | ||||||| | ||||||||||| || |||||||||||||| || ||||||
Sbjct: 845 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 904
Query: 162 tggaccagaa 171
||||||||||
Sbjct: 905 tggaccagaa 914
>dbj| AP008219.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
fosmid clone:OSJNOa264G09
Length = 31687
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 102 agcagaatttcaccaacctcgacatccatgtggggcagtcctactcctttctggtcacca 161
||||||| | ||||||| | ||||||||||| || |||||||||||||| || ||||||
Sbjct: 12564 agcagaactacaccaacatggacatccatgtcggccagtcctactccttccttctcacca 12623
Query: 162 tggaccagaa 171
||||||||||
Sbjct: 12624 tggaccagaa 12633
>gb| AY105556.1 | Zea mays PCO105129 mRNA sequence
Length = 752
Score = 60.0 bits (30), Expect = 1e-05
Identities = 135/170 (79%)
Strand = Plus / Plus
Query: 2 cgcttccgagtccacaatgtgggagtctcgacgagcttgaacctgaggatccagggccac 61
|||||||| |||||||| || || ||||| || ||| | ||| | ||||||||| ||||
Sbjct: 566 cgcttccgcgtccacaacgttggcgtctcaacaagcctcaacttcaggatccagaaccac 625
Query: 62 aacatggccatggtggagacagagggctcgtacacgatgaagcagaatttcaccaacctc 121
|||||| |||||||||| || || | ||||||| ||||||| | |||| ||||
Sbjct: 626 aacatgcgtctggtggagaccgaagggacctacacgaaccagcagaactacaccgacctg 685
Query: 122 gacatccatgtggggcagtcctactcctttctggtcaccatggaccagaa 171
|||||||| ||||| ||||||||||| || |||| |||||||| |||||
Sbjct: 686 gacatccacgtgggacagtcctactctttcttggtgaccatggatcagaa 735
>ref| NM_118656.3 | Arabidopsis thaliana SKS1 (SKU5 SIMILAR 1); copper ion binding
AT4G25240 (SKS1) mRNA, complete cds
Length = 2157
Score = 42.1 bits (21), Expect = 2.3
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420
|||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1188 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1228
>ref| NM_124527.3 | Arabidopsis thaliana copper ion binding AT5G51480 mRNA, complete cds
Length = 2263
Score = 42.1 bits (21), Expect = 2.3
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 1237 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1281
>ref| XM_446826.1 | Candida glabrata CBS138, CAGL0H00638g partial mRNA
Length = 1755
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 441 agttgaggaatatgccccctg 461
|||||||||||||||||||||
Sbjct: 431 agttgaggaatatgccccctg 451
>ref| XM_504499.1 | Yarrowia lipolytica CLIB122, YALI0E28270g predicted mRNA
Length = 873
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 212 gtgaacgagtcgctctggacc 232
|||||||||||||||||||||
Sbjct: 710 gtgaacgagtcgctctggacc 690
>gb| AY091230.1 | Arabidopsis thaliana putative pollen-specific protein precursor
(At4g25240) mRNA, complete cds
Length = 1801
Score = 42.1 bits (21), Expect = 2.3
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420
|||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1051 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1091
>gb| AY074379.1 | Arabidopsis thaliana putative Pollen-specific protein precursor
(At4g25240) mRNA, complete cds
Length = 2173
Score = 42.1 bits (21), Expect = 2.3
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420
|||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 1188 gctcgtccaaatccgcagggatcatttcattatggtcaaat 1228
>emb| CR380954.1 | Candida glabrata strain CBS138 chromosome H complete sequence
Length = 1050361
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 441 agttgaggaatatgccccctg 461
|||||||||||||||||||||
Sbjct: 62339 agttgaggaatatgccccctg 62319
>emb| AL161563.2 |ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63
Length = 198777
Score = 42.1 bits (21), Expect = 2.3
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420
|||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 14832 gctcgtccaaatccgcagggatcatttcattatggtcaaat 14872
>emb| AL035396.1 |ATF24A6 Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6 (ESSAII
project)
Length = 92073
Score = 42.1 bits (21), Expect = 2.3
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaat 420
|||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 65020 gctcgtccaaatccgcagggatcatttcattatggtcaaat 65060
>emb| AJ292743.1 |PCR292743 Petroselinum crispum mRNA for common plant regulatory factor 5
(cprf5 gene)
Length = 1410
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 ggtcaatcaggatgaacgtga 368
|||||||||||||||||||||
Sbjct: 765 ggtcaatcaggatgaacgtga 785
>gb| AC155228.11 | Medicago truncatula clone mth2-139i19, complete sequence
Length = 112322
Score = 42.1 bits (21), Expect = 2.3
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 149 tttctggtcaccatggaccagaatgcaag 177
|||||||| |||||||| |||||||||||
Sbjct: 40720 tttctggtaaccatggatcagaatgcaag 40748
>emb| BX830464.1 |CNS0A1MM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB83ZF06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2205
Score = 42.1 bits (21), Expect = 2.3
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 1224 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1268
>gb| BT004990.1 | Arabidopsis thaliana clone U20700 unknown protein (At5g51480) mRNA,
complete cds
Length = 1810
Score = 42.1 bits (21), Expect = 2.3
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 1048 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1092
>gb| BT004129.1 | Arabidopsis thaliana clone RAFL15-06-D22 (R20700) unknown protein
(At5g51480) mRNA, complete cds
Length = 2279
Score = 42.1 bits (21), Expect = 2.3
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 1237 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 1281
>dbj| AB018109.1 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
Length = 81293
Score = 42.1 bits (21), Expect = 2.3
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 380 gctcgtccgaatcctcaaggatcatttcactatgggcaaatcaac 424
|||||||| ||||| || |||||||||||||| || || ||||||
Sbjct: 10713 gctcgtccaaatccgcagggatcatttcactacggacagatcaac 10757
>emb| CR382131.1 | Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
Length = 4224103
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 212 gtgaacgagtcgctctggacc 232
|||||||||||||||||||||
Sbjct: 3342341 gtgaacgagtcgctctggacc 3342361
>emb| AL353681.8 | Human DNA sequence from clone RP1-158P9 on chromosome 1 Contains a
novel gene and a pseudogene, complete sequence
Length = 113539
Score = 40.1 bits (20), Expect = 8.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 273 agggcaaggcatctggtccgcttc 296
||||| ||||||||||||||||||
Sbjct: 10085 agggccaggcatctggtccgcttc 10062
>emb| AL670005.1 |NCB11H24 Neurospora crassa DNA linkage group V BAC clone B11H24
Length = 72580
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 66 tggccatggtggagacagag 85
||||||||||||||||||||
Sbjct: 71385 tggccatggtggagacagag 71366
>emb| AL513444.1 |NCB11N2 Neurospora crassa DNA linkage group V BAC contig B11N2
Length = 99360
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 tggccatggtggagacagag 85
||||||||||||||||||||
Sbjct: 92850 tggccatggtggagacagag 92869
>dbj| AK140846.1 | Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
library, clone:C130044D02 product:unclassifiable, full
insert sequence
Length = 3523
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 gaaaagaaagaagtctacac 567
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Sbjct: 202 gaaaagaaagaagtctacac 183
>gb| AC133510.3 | Mus musculus BAC clone RP23-409B11 from 8, complete sequence
Length = 195449
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 gaaaagaaagaagtctacac 567
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Sbjct: 140743 gaaaagaaagaagtctacac 140762
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,205,406
Number of Sequences: 3902068
Number of extensions: 5205406
Number of successful extensions: 79581
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79349
Number of HSP's gapped (non-prelim): 223
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)