ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3e16 |
|---|---|
| Clone Library Name | barley_pub |
>ARPC5_PONPY (Q5R516) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = +1 Query: 160 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 333 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 334 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 468 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_HUMAN (O15511) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = +1 Query: 160 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 333 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 334 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 468 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_MOUSE (Q9CPW4) Actin-related protein 2/3 complex subunit 5 (ARP2/3| complex 16 kDa subunit) (p16-ARC) Length = 150 Score = 57.4 bits (137), Expect = 2e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = +1 Query: 160 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLDT 333 ++++ L+Q AL+ AL+ P+ T+ + K +V + +++ + DI+ SLD Sbjct: 40 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 99 Query: 334 EYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILRSL 468 D+LMKY+Y+G + + L+ HEK G+G I+R L Sbjct: 100 NGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVL 144
>ARPC5_SCHPO (Q10316) ARP2/3 complex 16 kDa subunit (p16-ARC)| Length = 152 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Frame = +1 Query: 106 ETDENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPL--KTRDERCKSANWIVVH 279 ET E ++A +S++ ++R + ++ ++ LKT L P ++ R + N V Sbjct: 27 ETAEQVQAAVSQLIPQAR---SAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDV 83 Query: 280 RAMMAIRDIDGMFNSLDTEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 459 + + DI TE D ++ ++YRGL+ L HEK+ E +G+GCI+ Sbjct: 84 LSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIV 143 Query: 460 RSL 468 R L Sbjct: 144 RVL 146
>ARPC5_CAEEL (P91167) Probable actin-related protein 2/3 complex subunit 5| (ARP2/3 complex 16 kDa subunit) (p16-ARC) Length = 146 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Frame = +1 Query: 157 RKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIR--DIDGMFNSLD 330 +++ L+ ++ AL++ L P ++ K+ ++V + A R DI+ + L Sbjct: 34 QEVRQFLESNRLEYALQSVLLNPPFGHSEQELKNRAVLLVAEVIHAFRQTDIEESVHKLS 93 Query: 331 TEYYDILMKYLYRGLS-TGDRPTCDQCLKIHEKLTERAGLGCILRSLAD 474 E DILMKY+Y+ + D TC L H +L + G G I+R L++ Sbjct: 94 NENGDILMKYIYKAMQLCSDSATCLSLLLWHSQLVSKFGQGSIVRVLSN 142
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 33.1 bits (74), Expect = 0.41 Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Frame = +3 Query: 66 AGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPPQXXXXXXXXXXXXXXXXXQDPRR 245 +G PG +G GVPR PG PH AE R P + PR Sbjct: 480 SGGPGAEGGPGVPRGTNTPGA--APHAAEGAAAR-PRKRRGSDSGPAASSSASSSAAPRS 536 Query: 246 --AMQVGELDRGAPRH--DGDQGHRWH 314 A Q R APR D D G R H Sbjct: 537 PLAPQGVGAKRAAPRRAPDSDSGDRGH 563
>ARPC5_YEAST (P40518) ARP2/3 complex 16 kDa subunit (p16-ARC)| Length = 154 Score = 32.7 bits (73), Expect = 0.54 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Frame = +1 Query: 106 ETDENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRA 285 ET L+ L R+ Q R + T V+ L T P + D K + V A Sbjct: 30 ETTVTLQELQPRMNQL-RSLATSGDSLGAVQLLTT----DPPYSADAPTKEQYFKSVLEA 84 Query: 286 MMAIR--DIDGMFNSLDTEYYDILMKYLYRGLSTGD-RPTCDQCLKIHEKLTERAGLGCI 456 + +R DI + +L D+L+KYLY+G+S + L E++T+ +G+ I Sbjct: 85 LTQVRQADIGNVIKNLSDSQRDVLVKYLYKGMSVPQGQKQGGVLLAWLERITQVSGVTPI 144 Query: 457 LRSLAD 474 + ++D Sbjct: 145 VHYISD 150
>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)| Length = 360 Score = 32.3 bits (72), Expect = 0.71 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQP 140 P AG PG DG+ G P + PG P P Sbjct: 252 PGSAGMPGEDGYAGTPGEKGWPGPPGAP 279
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 EAG PG GF G P +PG +P V D PP Sbjct: 793 EAGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPP 830
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 EAG PG GF G P +PG +P V D PP Sbjct: 793 EAGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPP 830
>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)| Length = 210 Score = 32.0 bits (71), Expect = 0.92 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 54 APSEAGRPGRDGFGGVPRDGREPGGPHQP 140 AP E G G+DG G P + PG P QP Sbjct: 155 APGEKGPRGQDGHPGAPGNAGHPGQPGQP 183
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 32.0 bits (71), Expect = 0.92 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +3 Query: 54 APSEAGRPGRDGFGGVPRDGREPGGP 131 A + GRPGRDG G+P D PG P Sbjct: 215 ARGQPGRPGRDGNPGMPGDCGPPGAP 240
>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor| Length = 1707 Score = 32.0 bits (71), Expect = 0.92 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 69 GRPGRDGFGGVPRDGREPGGPHQP 140 G+PG G GG+P D EPG P P Sbjct: 849 GQPGSPGLGGLPGDRGEPGDPGVP 872
>SAHH_RAT (P10760) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 172 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 273 ++ + P+ AL+ A+EG + T DE CK N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACKEGNIFV 272
>SAHH_MOUSE (P50247) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Liver copper-binding protein) (CUBP) Length = 431 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 172 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 273 ++ + P+ AL+ A+EG + T DE CK N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACKEGNIFV 272
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 31.6 bits (70), Expect = 1.2 Identities = 24/83 (28%), Positives = 32/83 (38%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPPQXXXXXXXXXXXXXXXXXQD 236 P AG PG +G+ G P + +PG P A + PP + Sbjct: 187 PGHAGPPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPP---------------GKDGE 231 Query: 237 PRRAMQVGELDRGAPRHDGDQGH 305 P R + G DRG P G +GH Sbjct: 232 PGRPGRNG--DRGIPGLPGHKGH 252
>CO6A1_CHICK (P20785) Collagen alpha-1(VI) chain precursor| Length = 1019 Score = 31.6 bits (70), Expect = 1.2 Identities = 24/82 (29%), Positives = 28/82 (34%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPPQXXXXXXXXXXXXXXXXXQD 236 P E G+PGR G G P + PG +P T D P Sbjct: 374 PGEDGKPGRQGIPGSPGEKGAPGNRGEPGPLGETGDEGSPGADGPPGERGSNGERGPPGS 433 Query: 237 PRRAMQVGELDRGAPRHDGDQG 302 P G+L G P GDQG Sbjct: 434 PGDRGPRGDL--GEPGPPGDQG 453
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 E G PG GF G P +PG +P A D PP Sbjct: 804 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 841
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 E G PG GF G P +PG +P A D PP Sbjct: 366 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 403
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG--GPHQP 140 P +G PG GF GVP + EPG GP P Sbjct: 101 PGASGPPGPPGFQGVPGEPGEPGQTGPQGP 130
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 E G PG GF G P +PG +P A D PP Sbjct: 800 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 837
>C1QC_HUMAN (P02747) Complement C1q subcomponent subunit C precursor| Length = 245 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQP 140 P G PG+DG+ G+P EPG P P Sbjct: 39 PGLPGAPGKDGYDGLPGPKGEPGIPAIP 66
>SAHH_BACFR (Q64MT2) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 487 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +1 Query: 151 KSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMAIRDIDGM 315 +S L+ + P+ AL+ A+EG + T ++ CK N V + I ID M Sbjct: 289 RSYGARVLVTEVDPICALQAAMEGFEVVTMEDACKEGNIFVTTTGNIDIIRIDHM 343
>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin complex| Psm3 subunit) Length = 1194 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALE 219 E L++L +IE S + + ++K+ +EA KTALE Sbjct: 784 EALKSLSGQIENLSHEFDAIIKERAHIEARKTALE 818
>SAHH_PIG (Q710C4) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 172 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 273 ++ + P+ AL+ A+EG + T DE C+ N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACQEGNIFV 272
>SAHH_HUMAN (P23526) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 431 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 172 LLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 273 ++ + P+ AL+ A+EG + T DE C+ N V Sbjct: 239 IITEIDPINALQAAMEGYEVTTMDEACQEGNIFV 272
>ALG44_PSESM (Q887Q0) Alginate biosynthesis protein alg44| Length = 390 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = +1 Query: 181 QSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 Q KP E+L ++L G P++ +R S NW+ + +AM A Sbjct: 352 QIKPDESLSSSLAGRPVEVVSDRGPSVNWL-LDKAMAA 388
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 30.0 bits (66), Expect = 3.5 Identities = 29/115 (25%), Positives = 34/115 (29%), Gaps = 1/115 (0%) Frame = +3 Query: 48 GSAPSEAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPPQXXXXXXXXXXXXXXXX 227 G P+ G PG G G GG H+PH Sbjct: 731 GGPPNGRGGPGGGGMVG--------GGGHRPHEGP---------------GGSMGSGHRS 767 Query: 228 XQDPRRAMQVGELDRGAPRHDGDQGHRWHVQLTGYRVL*HPHEVPVQR-FVHRRP 389 + P +M G P H G GHR PH+VP R HR P Sbjct: 768 HEGPGGSMGSGHRSHEGPGHGGPHGHR-------------PHDVPSHRGHDHRGP 809
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQP 140 P G PG+DG G+P E G P QP Sbjct: 1117 PGAPGLPGQDGLPGLPGQKGESGFPGQP 1144
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQP 140 P+ G+PG DG G P D E G P P Sbjct: 233 PAGLGKPGLDGLPGAPGDKGESGPPGVP 260
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDP 173 P G G GF G+P D EPG P P + + R P Sbjct: 1032 PGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGP 1070
>CLPB_STAAW (Q8NXE7) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAS (Q6GAV1) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAR (Q6GIB2) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDSDRMIREVVTDEEIGD 542
>CLPB_STAAN (Q7A6G6) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAM (Q99VB5) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>CLPB_STAAC (Q5HHB0) Chaperone clpB| Length = 869 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +1 Query: 115 ENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMMA 294 E AL SR+E + KI L ++ ++ + ALE + E+ + + + Sbjct: 452 EKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKE 511 Query: 295 IRDIDGMFNSLDTEYYDILMKYLYRGLSTGD 387 +R+++ F E D +++ + GD Sbjct: 512 LRELEDNFQDEQGEDTDRMIREVVTDEEIGD 542
>SAHH_RHOBA (Q7TTZ5) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 448 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 151 KSRKIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIV 273 KS L+ + P+ AL+ A+EG + T +E CK V Sbjct: 238 KSYGCRVLVTEIDPINALQAAMEGFEVTTMEEACKEGRLYV 278
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQP 140 P G PGRDG G+P D PG P P Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLP 692 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGPHQPHRAEVTQDRDPP 176 P G PG G GG+ + PG P P + D+ PP Sbjct: 1266 PGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPP 1305 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGGP 131 P E G+PG+DG G EPG P Sbjct: 1163 PGEKGKPGQDGIPGPAGQKGEPGQP 1187 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGG 128 P G PG+DG G+P EPGG Sbjct: 572 PGLPGTPGQDGLPGLPGPKGEPGG 595
>SYD_AERPE (Q9Y9U7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 442 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 160 KIETLLKQSKPVEALKTALEGSPLKTRDERCKSANWIVVHRAMM-AIRDIDGMFNSLDTE 336 K+E L S PVE L +EGS + R K W+ + M+ AI +++ M + + Sbjct: 93 KVERLEVLSTPVEPLPLEVEGSEKASLPTRLK-YRWLDIRNPMVSAIFELEAMVAKVFRD 151 Query: 337 YY 342 YY Sbjct: 152 YY 153
>CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor| Length = 1025 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 54 APSEAGRPGRDGFGGVPRDGREPGGPHQPHRA 149 A EAGRPG G G D EPG P + A Sbjct: 377 ADGEAGRPGNSGSPGDEGDPGEPGPPGEKGEA 408
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG 125 P G+ GRDGF G+P D +PG Sbjct: 463 PGLDGQSGRDGFPGIPGDIGDPG 485
>DPY5_CAEEL (P91285) Cuticle collagen dpy-5 (Protein dumpy-5)| Length = 284 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGRE---PGGPHQPHRAEVTQDRDPP 176 P + G PG++GF G+P D + PG +P R D+ P Sbjct: 145 PGQDGLPGQEGFQGLPGDAGKRGTPGKDGEPGRVGDIGDQGTP 187
>C1QA_HUMAN (P02745) Complement C1q subcomponent subunit A precursor| Length = 245 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 63 EAGRPGRDGFGGVPRDGREPGGP 131 EAGRPGR G G+ + EPG P Sbjct: 35 EAGRPGRRGRPGLKGEQGEPGAP 57
>SMC2_CHICK (Q90988) Structural maintenance of chromosome 2 (Chromosome scaffold| protein ScII) Length = 1189 Score = 28.9 bits (63), Expect = 7.8 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Frame = +1 Query: 106 ETDENLEALISRIEQKSRKIETLLKQSKPVE----ALK---TALEGSPLKTRDERCKSAN 264 E + +EAL+ +EQ ++ + +QS+ + +LK +ALE +KTR+ + N Sbjct: 814 EKQQEVEALVLELEQLKQEQASYKQQSEAAQQAIASLKEQVSALEAEAVKTRESLKNAEN 873 Query: 265 WIVVHRAMMAIRDIDGMFNSLDTEYY 342 + + +M R D S E Y Sbjct: 874 ELSSEKGLMEERTKDIKAKSAKIEKY 899
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG--GPHQP 140 P AG PG GF G P + EPG GP P Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 172
>IWS1_HUMAN (Q96ST2) IWS1-like protein| Length = 819 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = +1 Query: 82 EMASAAYLETDENLEALISRIEQKSRKIETLLKQSKPVEALKTALEGSPL 231 EM S+ + T + ISR++++ RK + K+S+ A+K ++EG+ + Sbjct: 771 EMESSRFQATSKKG---ISRLDKQMRKFTDIRKKSRSAHAVKISIEGNKM 817
>NHX8_ARATH (Q3YL57) Sodium/hydrogen exchanger 8 (Na(+)/H(+) exchanger 8)| (NHE-8) (Protein SALT OVERLY SENSITIVE 1B) Length = 756 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 196 EALKTALEGSPLKTRDERCKSANWIVVHRAMMAIRDIDG 312 E +KTAL+ DE SA+W V R + +++D++G Sbjct: 468 EMMKTALKAFENLGDDEELGSADWPTVIRHISSLKDLEG 506
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPGG 128 P G PG+DG G+P EPGG Sbjct: 572 PGLPGTPGQDGLPGLPGPKGEPGG 595
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG--GPHQP 140 P AG PG GF G P + EPG GP P Sbjct: 184 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 213
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG 125 P AG PGRDG G+P PG Sbjct: 555 PGRAGTPGRDGHPGLPGPKGSPG 577
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG 125 P AG PGRDG G+P PG Sbjct: 555 PGRAGSPGRDGHPGLPGPKGSPG 577
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Frame = +3 Query: 57 PSEAGRPGRDGFGGVPRDGREPG--GPHQP 140 P AG PG GF G P + EPG GP P Sbjct: 27 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 56
>MED28_DROME (Q9VBQ9) Mediator of RNA polymerase II transcription subunit 28| (Mediator complex subunit 28) (Med23 homolog) Length = 189 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +3 Query: 48 GSAPSEAGRPGRDGF-GGVPRDGREPGGPHQP 140 G P G P R G G+P +PGGP QP Sbjct: 135 GGMPPMGGTPPRPGMMPGMPPGAMQPGGPMQP 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,788,930 Number of Sequences: 219361 Number of extensions: 1138733 Number of successful extensions: 5733 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 3798 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5610 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
