ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197804.1| Oryza sativa (japonica cultivar-group) putative... 157 5e-35
2gb|AF284781.1|AF284781 Oryza sativa LLS1 protein (Lls1) mRNA, co... 157 5e-35
3dbj|AK071899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
4dbj|AK067730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
5dbj|AK065124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
6ref|NM_197802.1| Oryza sativa (japonica cultivar-group) putative... 119 1e-23
7dbj|AK063367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
8gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 98 4e-17
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
11dbj|AK100517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
12gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosom... 46 0.14
13gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21... 42 2.1
14ref|XM_741589.1| Aspergillus fumigatus Af293 synthase of the typ... 42 2.1
15gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, co... 42 2.1
16gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q2... 42 2.1
17gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome... 42 2.1
18emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 co... 42 2.1
19ref|XM_516703.1| PREDICTED: Pan troglodytes similar to huntingti... 40 8.5
20gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
21gb|AC150896.6| Mus musculus BAC clone RP23-414N3 from chromosome... 40 8.5
22gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence 40 8.5
23emb|CR723051.2|CNS0GKUP Tetraodon nigroviridis full-length cDNA 40 8.5
24emb|CR687923.2|CNS0FTR3 Tetraodon nigroviridis full-length cDNA 40 8.5
25emb|CR677022.2|CNS0FLCQ Tetraodon nigroviridis full-length cDNA 40 8.5
26emb|CR676156.2|CNS0FKOO Tetraodon nigroviridis full-length cDNA 40 8.5
27emb|CR666105.2|CNS0FCXR Tetraodon nigroviridis full-length cDNA 40 8.5
28emb|CR664932.2|CNS0FC16 Tetraodon nigroviridis full-length cDNA 40 8.5
29emb|CR660647.2|CNS0F8Q5 Tetraodon nigroviridis full-length cDNA 40 8.5
30emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA 40 8.5
31emb|AL391001.12| Human DNA sequence from clone RP11-477H21 on ch... 40 8.5
32gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, comple... 40 8.5
33gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, compl... 40 8.5
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
35gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence 40 8.5

>ref|NM_197804.1| Oryza sativa (japonica cultivar-group) putative chlorophyll
           synthase (OSJNBa0057L21.2), mRNA
          Length = 2207

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/227 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
           ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 194 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 253

                                                                       
Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
           | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 254 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 313

                                                                       
Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370
           ||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 314 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 373

                                                          
Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417
           ||||||||||||||||| ||||||||  | || ||| ||||||||||
Sbjct: 374 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 420



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
           |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 31  cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 90

                                                                       
Query: 85  ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144
            |||||| | ||   |||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 91  ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 150

                 
Query: 145 ggtgct 150
           ||||||
Sbjct: 151 ggtgct 156



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>gb|AF284781.1|AF284781 Oryza sativa LLS1 protein (Lls1) mRNA, complete cds
          Length = 2138

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/227 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
           ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 253 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 312

                                                                       
Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
           | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 313 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 372

                                                                       
Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370
           ||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 373 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 432

                                                          
Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417
           ||||||||||||||||| ||||||||  | || ||| ||||||||||
Sbjct: 433 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 479



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
           |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 90  cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 149

                                                                       
Query: 85  ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144
            |||||| | ||   |||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 150 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 209

                 
Query: 145 ggtgct 150
           ||||||
Sbjct: 210 ggtgct 215



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>dbj|AK071899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059G06, full
           insert sequence
          Length = 2088

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/227 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
           ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 215 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 274

                                                                       
Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
           | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 275 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 334

                                                                       
Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370
           ||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 335 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 394

                                                          
Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417
           ||||||||||||||||| ||||||||  | || ||| ||||||||||
Sbjct: 395 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 441



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
           |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 52  cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 111

                                                                       
Query: 85  ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144
            |||||| | ||   |||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 112 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 171

                 
Query: 145 ggtgct 150
           ||||||
Sbjct: 172 ggtgct 177



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>dbj|AK067730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116K15, full
           insert sequence
          Length = 2540

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/227 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
           ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 617 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 676

                                                                       
Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
           | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 677 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 736

                                                                       
Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370
           ||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 737 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 796

                                                          
Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417
           ||||||||||||||||| ||||||||  | || ||| ||||||||||
Sbjct: 797 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 843



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 108 agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150
           |||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 537 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 579



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>dbj|AK065124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P04, full
           insert sequence
          Length = 2090

 Score =  157 bits (79), Expect = 5e-35
 Identities = 190/227 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
           ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 215 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 274

                                                                       
Query: 251 tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
           | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 275 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 334

                                                                       
Query: 311 agggcccggcaggacctgctcaccatcatggtgctccacaacaaggtggtggaggttctt 370
           ||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 335 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggtggtagaggttctt 394

                                                          
Query: 371 aatcctttagcaagggacttcaagtcggtcgggaccctgaggaaaga 417
           ||||||||||||||||| ||||||||  | || ||| ||||||||||
Sbjct: 395 aatcctttagcaagggagttcaagtcaattggaaccttgaggaaaga 441



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
           |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 52  cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 111

                                                                       
Query: 85  ctccttccgctgcctctccagaaagggggttggcaggtatggtggaatcaaggtgtacgc 144
            |||||| | ||   |||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 112 ttccttcaggtgttgctccagaaagggtgttggtagatatggaggaatcaaggtgtatgc 171

                 
Query: 145 ggtgct 150
           ||||||
Sbjct: 172 ggtgct 177



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>ref|NM_197802.1| Oryza sativa (japonica cultivar-group) putative chlorophyll
           synthase (OSJNBa0057L21.9), mRNA
          Length = 1560

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                       
Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
           ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 178 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 237

                                                                   
Query: 341 gtgctccacaacaaggtggtggaggttcttaatcctttagcaagggacttcaagtc 396
           || || |||||||||||||| |||||||| ||  |||||||||  || ||||||||
Sbjct: 238 gttctgcacaacaaggtggtagaggttctcaaatctttagcaatagagttcaagtc 293



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>dbj|AK063367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D11, full
           insert sequence
          Length = 1949

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                       
Query: 281 gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
           ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 261 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 320

                                                                   
Query: 341 gtgctccacaacaaggtggtggaggttcttaatcctttagcaagggacttcaagtc 396
           || || |||||||||||||| |||||||| ||  |||||||||  || ||||||||
Sbjct: 321 gttctgcacaacaaggtggtagaggttctcaaatctttagcaatagagttcaagtc 376



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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
             sequence
          Length = 183046

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 281   gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
             ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 51355 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 51414

                              
Query: 341   gtgctccacaacaaggt 357
             || || |||||||||||
Sbjct: 51415 gttctgcacaacaaggt 51431



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 137/167 (82%)
 Strand = Plus / Plus

                                                                         
Query: 191   tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
             ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 42221 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 42280

                                                                         
Query: 251   tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
             | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 42281 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 42340

                                                            
Query: 311   agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357
             ||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 42341 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 42387



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 354   aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413
             ||||||| |||||||||||||||||||||||||| ||||||||  | || ||| ||||||
Sbjct: 42558 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 42617

                 
Query: 414   aaga 417
             ||||
Sbjct: 42618 aaga 42621



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                         
Query: 25    cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
             |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 41519 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 41578

                    
Query: 85    ctccttc 91
              ||||||
Sbjct: 41579 ttccttc 41585



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 108   agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150
             |||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 42141 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 42183



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 281      gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
                ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 21956966 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 21956907

                                 
Query: 341      gtgctccacaacaaggt 357
                || || |||||||||||
Sbjct: 21956906 gttctgcacaacaaggt 21956890



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 137/167 (82%)
 Strand = Plus / Minus

                                                                            
Query: 191      tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
                ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 21966100 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 21966041

                                                                            
Query: 251      tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
                | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 21966040 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 21965981

                                                               
Query: 311      agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357
                ||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 21965980 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 21965934



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 354      aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413
                ||||||| |||||||||||||||||||||||||| ||||||||  | || ||| ||||||
Sbjct: 21965763 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 21965704

                    
Query: 414      aaga 417
                ||||
Sbjct: 21965703 aaga 21965700



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 25       cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
                |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 21966802 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 21966743

                       
Query: 85       ctccttc 91
                 ||||||
Sbjct: 21966742 ttccttc 21966736



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 108      agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150
                |||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 21966180 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 21966138



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 281      gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
                ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 21968629 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 21968570

                                 
Query: 341      gtgctccacaacaaggt 357
                || || |||||||||||
Sbjct: 21968569 gttctgcacaacaaggt 21968553



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 137/167 (82%)
 Strand = Plus / Minus

                                                                            
Query: 191      tgggaggccctgttccatgtggacgaccccggccccagggttccgatcgagaagggccag 250
                ||||||||| |||||||||| || ||||| || || |||||||| || |  || ||| ||
Sbjct: 21977763 tgggaggccttgttccatgtcgatgacccggggccaagggttccaattgcaaaaggcaag 21977704

                                                                            
Query: 251      tacctggaagccaagcaggcgctcgacgtcgtccgcttcgacatccagtactgcgactgg 310
                | | |||| | ||| || || || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 21977703 ttcttggatgtcaaccaagctcttgaggtggtccggttcgatatccagtattgcgattgg 21977644

                                                               
Query: 311      agggcccggcaggacctgctcaccatcatggtgctccacaacaaggt 357
                ||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 21977643 agggcgcggcaggacctcctcaccatcatggttcttcacaacaaggt 21977597



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 354      aggtggtggaggttcttaatcctttagcaagggacttcaagtcggtcgggaccctgagga 413
                ||||||| |||||||||||||||||||||||||| ||||||||  | || ||| ||||||
Sbjct: 21977426 aggtggtagaggttcttaatcctttagcaagggagttcaagtcaattggaaccttgagga 21977367

                    
Query: 414      aaga 417
                ||||
Sbjct: 21977366 aaga 21977363



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 25       cgtagcgtccatgaccacagtcgcctcgctctccctggtgccgcacctgctcatcaagcc 84
                |||||| ||||||||||| || || ||||| ||  || |||||||| |||||||||||||
Sbjct: 21978465 cgtagcatccatgaccactgtggcatcgctgtctttgctgccgcacttgctcatcaagcc 21978406

                       
Query: 85       ctccttc 91
                 ||||||
Sbjct: 21978405 ttccttc 21978399



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 108      agggggttggcaggtatggtggaatcaaggtgtacgcggtgct 150
                |||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 21977843 agggtgttggtagatatggaggaatcaaggtgtatgcggtgct 21977801



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>dbj|AK100517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100H07, full
            insert sequence
          Length = 2983

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                        
Query: 281  gtccgcttcgacatccagtactgcgactggagggcccggcaggacctgctcaccatcatg 340
            ||||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 2049 gtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatg 1990

              
Query: 341  gt 342
            ||
Sbjct: 1989 gt 1988



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>gb|AC123817.4| Mus musculus BAC clone RP24-255D13 from chromosome 9, complete sequence
          Length = 169614

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 442   tgcaaaggctcacaaccagcttt 464
             |||||||||||||||||||||||
Sbjct: 76197 tgcaaaggctcacaaccagcttt 76219



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>gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21.3, complete sequence
          Length = 73259

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 524   gtcaatgaaaggctgttgtcg 544
             |||||||||||||||||||||
Sbjct: 58095 gtcaatgaaaggctgttgtcg 58075



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>ref|XM_741589.1| Aspergillus fumigatus Af293 synthase of the type 3 pneumococcal
           capsular polysaccharide (Afu7g02500) partial mRNA
          Length = 1101

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 128 ggaatcaaggtgtacgcggtgctaa 152
           ||||||||| |||||||||||||||
Sbjct: 952 ggaatcaagatgtacgcggtgctaa 976



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>gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, complete sequence
          Length = 169865

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 524   gtcaatgaaaggctgttgtcg 544
             |||||||||||||||||||||
Sbjct: 82267 gtcaatgaaaggctgttgtcg 82247



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>gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q21, complete sequence
          Length = 177726

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 524    gtcaatgaaaggctgttgtcg 544
              |||||||||||||||||||||
Sbjct: 158025 gtcaatgaaaggctgttgtcg 158005



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>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence
          Length = 164119

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    ggggttggcaggtatggtgga 130
              |||||||||||||||||||||
Sbjct: 161040 ggggttggcaggtatggtgga 161060



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>emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 complete genome
          Length = 130989

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 264   agcaggcgctcgacgtcgtccgcttcgacatcc 296
             ||||||||||||||| |||| || |||||||||
Sbjct: 41316 agcaggcgctcgacgacgtcagcatcgacatcc 41284



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>ref|XM_516703.1| PREDICTED: Pan troglodytes similar to huntingtin-associated protein
           interacting protein (duo) (LOC460643), mRNA
          Length = 10806

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 cgggaccctgaggaaagacc 419
           ||||||||||||||||||||
Sbjct: 15  cgggaccctgaggaaagacc 34



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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0067H15, complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcgacggcggccggcggcag 20
             ||||||||||||||||||||
Sbjct: 95221 gcgacggcggccggcggcag 95202



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>gb|AC150896.6| Mus musculus BAC clone RP23-414N3 from chromosome 1, complete sequence
          Length = 207503

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tgggaggccctgttccatgt 210
             ||||||||||||||||||||
Sbjct: 81775 tgggaggccctgttccatgt 81756



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>gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence
          Length = 176757

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  ttgcaaaggctcacaaccag 460
            ||||||||||||||||||||
Sbjct: 2877 ttgcaaaggctcacaaccag 2896



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>emb|CR723051.2|CNS0GKUP Tetraodon nigroviridis full-length cDNA
          Length = 754

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 399 cggcggccggcggcagccag 418



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>emb|CR687923.2|CNS0FTR3 Tetraodon nigroviridis full-length cDNA
          Length = 740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 387 cggcggccggcggcagccag 406



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>emb|CR677022.2|CNS0FLCQ Tetraodon nigroviridis full-length cDNA
          Length = 805

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 451 cggcggccggcggcagccag 470



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>emb|CR676156.2|CNS0FKOO Tetraodon nigroviridis full-length cDNA
          Length = 645

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 442 cggcggccggcggcagccag 461



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>emb|CR666105.2|CNS0FCXR Tetraodon nigroviridis full-length cDNA
          Length = 842

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 487 cggcggccggcggcagccag 506



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>emb|CR664932.2|CNS0FC16 Tetraodon nigroviridis full-length cDNA
          Length = 843

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 488 cggcggccggcggcagccag 507



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>emb|CR660647.2|CNS0F8Q5 Tetraodon nigroviridis full-length cDNA
          Length = 758

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 424 cggcggccggcggcagccag 443



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>emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA
          Length = 810

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggcggccggcggcagccag 24
           ||||||||||||||||||||
Sbjct: 455 cggcggccggcggcagccag 474



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>emb|AL391001.12| Human DNA sequence from clone RP11-477H21 on chromosome 1 Contains part
             of the PBX1 gene for pre-B-cell leukemia transcription
             factor 1, complete sequence
          Length = 196730

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   gctcacaaccagctttattt 468
             ||||||||||||||||||||
Sbjct: 63585 gctcacaaccagctttattt 63566



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>gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, complete sequence
          Length = 163864

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  gcttcaggaggaacttgcaa 446
            ||||||||||||||||||||
Sbjct: 2946 gcttcaggaggaacttgcaa 2965



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>gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, complete sequence
          Length = 107857

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  gcttcaggaggaacttgcaa 446
            ||||||||||||||||||||
Sbjct: 9845 gcttcaggaggaacttgcaa 9826



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gcgacggcggccggcggcag 20
               ||||||||||||||||||||
Sbjct: 6970298 gcgacggcggccggcggcag 6970279



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>gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence
          Length = 51739

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   ttgcaaaggctcacaaccag 460
             ||||||||||||||||||||
Sbjct: 33603 ttgcaaaggctcacaaccag 33622


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,404,278
Number of Sequences: 3902068
Number of extensions: 4404278
Number of successful extensions: 85664
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85469
Number of HSP's gapped (non-prelim): 191
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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