ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3e03 |
|---|---|
| Clone Library Name | barley_pub |
>Y3806_PSEAE (Q51385) Hypothetical UPF0063 protein PA3806| Length = 379 Score = 68.2 bits (165), Expect = 1e-11 Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Frame = +1 Query: 184 RVMLKGMDYPELEKWVQSQG---FRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMI 354 +V L G+ P+LE++ +S G FR GQ M W +G + + D + + K LR+ + Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQVMK-WIHHFGVDDF----DAMTNVGKALREKL 62 Query: 355 SDHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 A+++ + ++DGTRK + + S +ETV IP GR T+CVSSQ GCA++C Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIPQG-GRGTLCVSSQAGCALDC 121
>YLON_BACSU (O34617) Hypothetical UPF0063 protein yloN| Length = 363 Score = 67.8 bits (164), Expect = 2e-11 Identities = 38/117 (32%), Positives = 64/117 (54%) Frame = +1 Query: 184 RVMLKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMISDH 363 R + + E+++W+ G +P +A +++ LY V + +++ L+KDLR+ ++ Sbjct: 17 RPSIYSFELDEIKQWLTDNGEKPFRAAQIFEWLYEKRVSSF--EDMTNLSKDLREKLNTR 74 Query: 364 ADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 L L T+ DGT K LF L D IETV++ G +VCV++QVGC + C Sbjct: 75 FVLTTLKTAVKQTSQDGTMKFLFELHDGYTIETVLMRHEYG-NSVCVTTQVGCRIGC 130
>Y098_SYNY3 (Q55880) Hypothetical UPF0063 protein sll0098| Length = 350 Score = 63.9 bits (154), Expect = 3e-10 Identities = 44/114 (38%), Positives = 58/114 (50%) Frame = +1 Query: 193 LKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMISDHADL 372 L + PEL WVQ+ G + + + LY A + L K R+ + H + Sbjct: 8 LLSLSLPELTDWVQTTGQPAYRGKQIHQWLYQKG--ARSLTAMTDLPKVWREK-NVHYPI 64 Query: 373 KALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 + A D TRK L L D +IETV IPS++ R TVCVSSQVGCAM+C Sbjct: 65 GRSVIDHCAVAPDHTRKYLLRLADGLIIETVGIPSSK-RLTVCVSSQVGCAMDC 117
>YFGB_ECOLI (P36979) Hypothetical UPF0063 protein yfgB| Length = 384 Score = 60.1 bits (144), Expect = 4e-09 Identities = 39/118 (33%), Positives = 67/118 (56%) Frame = +1 Query: 184 RVMLKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMISDH 363 ++ L ++ ++ ++ + G +P +A + K +Y + DE+ +NK LR + + Sbjct: 17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY--HYCCDNFDEMTDINKVLRGKLKEV 74 Query: 364 ADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNCQ 537 A+++A V + +SDGT K ++ D V ETV IP R T+CVSSQVGCA+ C+ Sbjct: 75 AEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCALECK 130
>Y365_HAEIN (P44665) Hypothetical UPF0063 protein HI0365| Length = 390 Score = 58.2 bits (139), Expect = 1e-08 Identities = 40/120 (33%), Positives = 64/120 (53%) Frame = +1 Query: 175 PRVRVMLKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMI 354 P ++ L + ++ ++ + G +P +A L K +Y + D + +NK LR+ + Sbjct: 19 PAKKINLMDLTRQQMREFFKELGEKPFRADQLVKWIY--HFGEDNFDNMTNINKKLREKL 76 Query: 355 SDHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 A++KA V ++DGT K + + V ETV IP A R T+CVSSQVGCA+ C Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQVGEQQV-ETVYIPEA-DRATLCVSSQVGCALAC 134
>Y275_BUCAP (Q8K9P5) Hypothetical UPF0063 protein BUsg275| Length = 363 Score = 56.6 bits (135), Expect = 4e-08 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Frame = +1 Query: 184 RVMLKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDE--LAGLNKDLRKMIS 357 ++ L ++ E+E ++ S G + L K +Y HC++ ++ L KD+RK ++ Sbjct: 14 KINLLDLNRKEIEIFLLSLGAKKFVTDQLMKWIYNR----HCNNFNLMSNLKKDIRKKLN 69 Query: 358 DHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNCQ 537 + + + A + + DGT K + S+ D IET+ IP + R T+CVSSQ+GC++ C+ Sbjct: 70 ERSYIFASNFIEEKISYDGTVKWITSI-DKQKIETIYIPEKK-RATLCVSSQIGCSLKCK 127
>Y265_BUCBP (Q89AK8) Hypothetical UPF0063 protein bbp_265| Length = 373 Score = 43.9 bits (102), Expect = 3e-04 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Frame = +1 Query: 178 RVRVMLKGMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHD--ELAGLNKDLRKM 351 +++ L D ++K+ S G +A + K +Y + +C D ++ ++ LRK Sbjct: 14 KLKTNLLNFDLQSMKKFFCSIGELEFRAQQVMKWIYQH----YCDDFNKMTNISLQLRKK 69 Query: 352 ISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMN 531 +S + + + DGT K + + IETV IP + RTT+C+SSQ+GC++ Sbjct: 70 LSTLCCITPPKFLNHKVSVDGTMKWSVVIGN-QCIETVCIPKNQ-RTTLCISSQLGCSLA 127 Query: 532 C 534 C Sbjct: 128 C 128
>Y2904_MYCBO (P0A645) Hypothetical UPF0063 protein Mb2904c| Length = 364 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +1 Query: 379 LTVKDIITASDG-TRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 LT IT G TRK L+ D ++ E+V++ R R TVC+SSQ GC M C Sbjct: 79 LTASADITCDAGQTRKTLWRAVDGTMFESVLMRYPR-RNTVCISSQAGCGMAC 130
>Y2880_MYCTU (P0A644) Hypothetical UPF0063 protein Rv2880c/Rv2879c/MT2947| Length = 364 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +1 Query: 379 LTVKDIITASDG-TRKILFSLEDASVIETVVIPSARGRTTVCVSSQVGCAMNC 534 LT IT G TRK L+ D ++ E+V++ R R TVC+SSQ GC M C Sbjct: 79 LTASADITCDAGQTRKTLWRAVDGTMFESVLMRYPR-RNTVCISSQAGCGMAC 130
>Y286_BUCAI (P57373) Hypothetical UPF0063 protein BU286| Length = 363 Score = 38.9 bits (89), Expect = 0.009 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +1 Query: 304 HCHD--ELAGLNKDLRKMISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPS 477 +C D ++ ++ RK + + + + A + + DGT K + + + IETV +P Sbjct: 50 YCDDFNKMLNISIKTRKKLYEKSYIFASEFIEEKISYDGTIKWITDINNQK-IETVYMPE 108 Query: 478 ARGRTTVCVSSQVGCAMNC 534 + R+T+CVSSQ+GC++ C Sbjct: 109 KK-RSTLCVSSQIGCSLKC 126
>Y1428_HELPY (O25970) Hypothetical UPF0063 protein HP1428| Length = 357 Score = 36.2 bits (82), Expect = 0.059 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Frame = +1 Query: 331 NKDLRKMISDHADLKALTVKDIITASDGTRKILF-SLEDASVIETVVIPSA--------- 480 +KD + L+ + + + + DG++K LF SL D E V++ Sbjct: 46 SKDFIAYLEREFALRTIEITHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDAETN 105 Query: 481 ----RGRTTVCVSSQVGCAMNC 534 R + TVCVS Q+GC + C Sbjct: 106 AILEREKYTVCVSCQIGCQVGC 127
>KTHY_XANAC (Q8PFG7) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)| Length = 227 Score = 35.8 bits (81), Expect = 0.078 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +3 Query: 33 PSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRPLRARTESQSH-A*GDGL 209 PS +Y G A P+ LL P P LL P P +RAR ++ +H D L Sbjct: 102 PSMVAYQGAAGLPLDELLERNAFAPRPDVLLLLDLPPPTGLARIRARGDAPNHFETQDNL 161 Query: 210 PRAREMGAVARIP 248 R R + A +P Sbjct: 162 ERCRTIFAALELP 174
>KTHY_XANCP (Q8P3Y6) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)| Length = 227 Score = 35.4 bits (80), Expect = 0.10 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Frame = +3 Query: 33 PSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRPLRARTESQSH-A*GDGL 209 PS +Y G A P+ LL P P LL P P +RAR ++ +H D L Sbjct: 102 PSMVAYQGAAGLPLDALLAANDFAPRPDLLLLLDLPPPTGLARIRARGDAPNHFETQDNL 161 Query: 210 PRAREMGAVARIP 248 R R + A ++P Sbjct: 162 ERCRAIFAALQLP 174
>YE28_HELPJ (Q9ZJI4) Hypothetical UPF0063 protein jhp_1325| Length = 357 Score = 35.0 bits (79), Expect = 0.13 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%) Frame = +1 Query: 331 NKDLRKMISDHADLKALTVKDIITASDGTRKILF-SLEDASVIETVVIPSARGRT----- 492 +KD + L+ + + + + DG++K LF SL D E V++ + Sbjct: 46 SKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETN 105 Query: 493 --------TVCVSSQVGCAMNC 534 TVCVS Q+GC + C Sbjct: 106 AVLEGEKYTVCVSCQIGCQVGC 127
>KTHY_XANOR (Q5H5T5) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase)| Length = 227 Score = 34.3 bits (77), Expect = 0.23 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +3 Query: 33 PSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRPLRARTESQSH-A*GDGL 209 PS +Y G A P+ LL P P LL P P +RAR ++ +H D L Sbjct: 102 PSMVAYQGAAGLPLDELLELNAFAPRPDVLLLLDLPPPTGLARIRARGDAPNHFETQDNL 161 Query: 210 PRAREMGAVARIP 248 R R + A +P Sbjct: 162 ERCRTIFAGLELP 174
>PXK_HUMAN (Q7Z7A4) PX domain-containing protein kinase-like protein| (Modulator of Na,K-ATPase) (MONaKA) Length = 578 Score = 32.7 bits (73), Expect = 0.66 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Frame = +3 Query: 36 SNNSYGGGASSPVGRLLHP--------RQLLPSPAATPLLRSPTPPCCRPLRARTESQSH 191 SNNS G GASSP+ P L P P P +P PP A+ SQ+ Sbjct: 485 SNNSAGSGASSPLTSPSSPTPPSTSGISALPPPPPPPPPPAAPLPPASTEAPAQLSSQA- 543 Query: 192 A*GDGLPRAREMGAVARIPTGT 257 +G+ R + ++ GT Sbjct: 544 --VNGMSRGALLSSIQNFQKGT 563
>CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3.2.-) (Signal| transduction protein CBL-B-A) (SH3-binding protein CBL-B-A) Length = 918 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = +3 Query: 27 RXPSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRP 161 R P + G SSP + +Q P PA PLLR P PP RP Sbjct: 530 RSPCASPTGSPKSSPC---MVRKQDKPLPAPPPLLREPPPPPERP 571
>ETV4_MOUSE (P28322) ETS translocation variant 4 (Polyomavirus enhancer| activator 3) (PEA3 protein) Length = 555 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +1 Query: 73 WGASSIHANSFPPPRRRLFSA---LRHPPAAARYEPGPRVRVMLKG 201 WG + A+ P P + S+ HPPAA PGP+V +G Sbjct: 20 WGPGAQAASLRPSPATLVVSSPGHAEHPPAAPAQTPGPQVSASARG 65
>KDUI_BACHD (Q9KAX0) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC| 5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI isomerase) Length = 276 Score = 29.6 bits (65), Expect = 5.6 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 9/86 (10%) Frame = +1 Query: 85 SIHANSFPPPRRRLF-SALRHPPAAARYEPGPRVRVMLKGMDYPE----LEKWVQSQGFR 249 S H+ P R F SAL H + P G D + K++ S+G + Sbjct: 112 SFHSEDSSNPARFYFVSALAHHEYPTKVLPIEEAVPTKLGSDAESNNRTIYKYIHSEGIQ 171 Query: 250 PGQAMMLWKCLYGNNVW----AHCHD 315 Q MM L NN+W AH HD Sbjct: 172 SCQLMMGMTLLEPNNMWNTMPAHIHD 197
>AMPN1_LACLA (Q9CIQ1) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)| (Lys-AP) (Alanine aminopeptidase) Length = 846 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/83 (30%), Positives = 33/83 (39%) Frame = +1 Query: 76 GASSIHANSFPPPRRRLFSALRHPPAAARYEPGPRVRVMLKGMDYPELEKWVQSQGFRPG 255 G S+H P L P A Y G R+ VML+ KW+ + F G Sbjct: 351 GVQSVHVEVTHPDE---IGTLFDP--AIVYAKGSRLMVMLR--------KWLGDEDFAAG 397 Query: 256 QAMMLWKCLYGNNVWAHCHDELA 324 A+ + YGN V + D LA Sbjct: 398 LALYFKRHQYGNTVGDNLWDALA 420
>AMPN_LACLC (P37897) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)| (Lys-AP) (Alanine aminopeptidase) Length = 845 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/83 (30%), Positives = 33/83 (39%) Frame = +1 Query: 76 GASSIHANSFPPPRRRLFSALRHPPAAARYEPGPRVRVMLKGMDYPELEKWVQSQGFRPG 255 G S+H P L P A Y G R+ VML+ KW+ + F G Sbjct: 350 GVQSVHVEVTHPDE---IGTLFDP--AIVYAKGSRLMVMLR--------KWLGDEDFAAG 396 Query: 256 QAMMLWKCLYGNNVWAHCHDELA 324 A+ + YGN V + D LA Sbjct: 397 LALYFKRHQYGNTVGDNLWDALA 419
>PXK_MOUSE (Q8BX57) PX domain-containing protein kinase-like protein| (Modulator of Na,K-ATPase) (MONaKA) Length = 582 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/38 (50%), Positives = 21/38 (55%) Frame = +3 Query: 36 SNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPP 149 SNNS G GASSP L P P+P +T L S PP Sbjct: 485 SNNSAGSGASSP---LTSPSS--PTPPSTAGLSSALPP 517
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +1 Query: 313 DELAGLNKDLRKMISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVVIPSARGRT 492 D++ L + LR + S+H+ S GT+ SLE V+ET V P G T Sbjct: 1644 DDIKTLEEKLRSLFSEHS-------------SSGTQHASVSLETPLVVETTVTP---GIT 1687 Query: 493 TVCVS 507 T V+ Sbjct: 1688 TTAVA 1692
>AB1IP_MOUSE (Q8R5A3) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich protein 48) Length = 670 Score = 29.3 bits (64), Expect = 7.3 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +3 Query: 45 SYGGGASSPVGRLLHPRQLLPSPAATP---LLRSPTPPCCRPLRARTESQSHA*GDGLPR 215 S G GAS+ + H + LP P P LL P PP L ++ E ++ A D + Sbjct: 109 SGGYGASAAAIDVSHHEEALPPPPVEPMLDLLPPPPPPPPPELLSKEEEEAKAKADKIKL 168 Query: 216 AREMGAVARI 245 A E A++ Sbjct: 169 ALEKLKEAKV 178
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 21 PPRXPSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTP 146 PP P+ + Y G SS +G P P+ +TP L TP Sbjct: 735 PPSVPAPSDYPGQGSSFLGPGTFPESFPPTTPSTPTLAEFTP 776
>CLPX_LEGPL (Q5WVJ1) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 424 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/75 (26%), Positives = 36/75 (48%) Frame = +1 Query: 289 NNVWAHCHDELAGLNKDLRKMISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVV 468 +N+ C AGL+K +R+ + + +K +++D K+L LE +I+ + Sbjct: 239 SNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKYGL 298 Query: 469 IPSARGRTTVCVSSQ 513 IP GR V + Q Sbjct: 299 IPEFVGRLPVVTTLQ 313
>CLPX_LEGPH (Q5ZUE0) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 424 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/75 (26%), Positives = 36/75 (48%) Frame = +1 Query: 289 NNVWAHCHDELAGLNKDLRKMISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVV 468 +N+ C AGL+K +R+ + + +K +++D K+L LE +I+ + Sbjct: 239 SNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKYGL 298 Query: 469 IPSARGRTTVCVSSQ 513 IP GR V + Q Sbjct: 299 IPEFVGRLPVVTTLQ 313
>CLPX_LEGPA (Q5X452) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 424 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/75 (26%), Positives = 36/75 (48%) Frame = +1 Query: 289 NNVWAHCHDELAGLNKDLRKMISDHADLKALTVKDIITASDGTRKILFSLEDASVIETVV 468 +N+ C AGL+K +R+ + + +K +++D K+L LE +I+ + Sbjct: 239 SNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEASKVLGQLESDDLIKYGL 298 Query: 469 IPSARGRTTVCVSSQ 513 IP GR V + Q Sbjct: 299 IPEFVGRLPVVTTLQ 313
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Frame = +1 Query: 46 PMAAVPLLRWGASSIHANSF-------PPPRRRLFSALRHPPAAARYEPGPRVRVMLKGM 204 PM VP++ S + AN+F P P L A PP AA PG + R G Sbjct: 496 PMPRVPVVGITPSQMVANAFCSAAQLQPQPATLLGKAGAFPPPAAPSAPGGQARPRPNGA 555 Query: 205 DYP 213 +P Sbjct: 556 PWP 558
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 106 PPPRRRLFSALRH-PPAAARYEPGP 177 PPPRRR S R+ PP RY P P Sbjct: 603 PPPRRRSPSPRRYSPPIQRRYSPSP 627
>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4641 Score = 28.9 bits (63), Expect = 9.5 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = +3 Query: 21 PPRXPSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRPLRARTESQSHA*G 200 P P+N S GASSP H + LP + P+ PP R R++S S+ Sbjct: 2786 PKTLPANRSSPSGASSPRSSSPHDKN-LPQKSTAPVKTKLDPP-----RERSKSDSYTLD 2839 Query: 201 DGLPRAREM 227 R ++M Sbjct: 2840 PDTLRKKKM 2848
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.9 bits (63), Expect = 9.5 Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 25/127 (19%) Frame = +3 Query: 21 PPRXPSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTP--PCCRPLRARTESQSHA 194 PP +N + G A++P +P P+PAA P + TP P P S H Sbjct: 231 PPAPTANPT--GPAANPPATTANP----PAPAANPSAPAATPTGPAANPPAPAASSTPHG 284 Query: 195 *GD-----GLPRAREM-----GAVARIPTGT------------GHDAVEMPLREQRLGAL 308 GL E+ G R P G GH EM R++R+ L Sbjct: 285 HCPNGVTAGLGPVAEVKSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVL 344 Query: 309 PR-RAGW 326 P+ RA W Sbjct: 345 PQARASW 351
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 106 PPPRRRLFSALRH-PPAAARYEPGP 177 PPPRRR S R+ PP RY P P Sbjct: 584 PPPRRRSPSPRRYSPPIQRRYSPSP 608
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 106 PPPRRRLFSALRH-PPAAARYEPGP 177 PPPRRR S R+ PP RY P P Sbjct: 577 PPPRRRSPSPRRYSPPIQRRYSPSP 601
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 28.9 bits (63), Expect = 9.5 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +3 Query: 3 RHEGKIPP-RXPSNNSYGGGASSPVGRLLHPRQLLPSPAATPLLRSPTPPCCRPL 164 +H G P PS S G G P HP + PA+ L+ PP +PL Sbjct: 856 QHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPL 910
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 106 PPPRRRLFSALRH-PPAAARYEPGP 177 PPPRRR S R+ PP RY P P Sbjct: 598 PPPRRRSPSPRRYSPPIQRRYSPSP 622 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,822,018 Number of Sequences: 219361 Number of extensions: 1566958 Number of successful extensions: 6244 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6218 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
