ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3e01 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 80.5 bits (197), Expect = 1e-15 Identities = 38/44 (86%), Positives = 40/44 (90%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 138 T+ TGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 286 TQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 79.7 bits (195), Expect = 2e-15 Identities = 36/44 (81%), Positives = 41/44 (93%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 138 T+++ TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 290 TKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 78.2 bits (191), Expect = 5e-15 Identities = 35/43 (81%), Positives = 40/43 (93%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T++ TGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 287 TKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/43 (81%), Positives = 39/43 (90%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T++ TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 290 TQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/43 (81%), Positives = 39/43 (90%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T++ TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 287 TQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 75.9 bits (185), Expect = 2e-14 Identities = 35/43 (81%), Positives = 38/43 (88%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T++ TGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 290 TKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 75.1 bits (183), Expect = 4e-14 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T++ TGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 289 TKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 73.9 bits (180), Expect = 9e-14 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 T + TGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 288 TSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 73.6 bits (179), Expect = 1e-13 Identities = 37/45 (82%), Positives = 40/45 (88%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 141 T++ TGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 283 TKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 67.8 bits (164), Expect = 7e-12 Identities = 28/37 (75%), Positives = 34/37 (91%) Frame = +1 Query: 25 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 255 TGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 67.4 bits (163), Expect = 9e-12 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = +1 Query: 10 RASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 132 + + TGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 294 KVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 67.0 bits (162), Expect = 1e-11 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = +1 Query: 10 RASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 132 + + TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 251 KVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 59.3 bits (142), Expect = 2e-09 Identities = 24/45 (53%), Positives = 36/45 (80%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 141 T+ TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 229 TQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 58.9 bits (141), Expect = 3e-09 Identities = 25/42 (59%), Positives = 35/42 (83%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 132 T+ + TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 230 TKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 56.6 bits (135), Expect = 2e-08 Identities = 24/42 (57%), Positives = 33/42 (78%) Frame = +1 Query: 10 RASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 + +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 232 KVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = +1 Query: 25 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = +1 Query: 25 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 49.3 bits (116), Expect = 2e-06 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +1 Query: 7 TRASRXTGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 135 ++ TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 231 SKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +1 Query: 58 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 189 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 58 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 183 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -1 Query: 240 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 100 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = -2 Query: 242 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 63 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTSA 529 Query: 62 GCTLSKT 42 + S + Sbjct: 530 SSSSSSS 536
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -1 Query: 210 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 91 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 231 THCCLDSFLSTDQPTYACTKDEYL 160 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -3 Query: 253 FILDTHTNTLLPRFFPLHRPT 191 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -3 Query: 253 FILDTHTNTLLPRFFPLHRPT 191 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -3 Query: 253 FILDTHTNTLLPRFFPLHRPT 191 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -3 Query: 253 FILDTHTNTLLPRFFPLHRPT 191 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,897,898 Number of Sequences: 219361 Number of extensions: 730526 Number of successful extensions: 2047 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2046 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
