Clone Name	basd3d23
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragm...	375	e-101
2	dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome	375	e-101
3	emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome	206	5e-50
4	gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast,...	206	5e-50
5	gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome	206	5e-50
6	dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete ...	206	5e-50
7	gb|M16840.1|WHTCPCA2 Wheat Asp-tRNA gene	196	4e-47
8	gb|AY694133.1| Pennisetum glaucum clone PGE123 photosystem II lo...	101	2e-18
9	gb|AC007132.3| Homo sapiens BAC clone RP11-444A22 from 2, comple...	52	0.002
10	emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, ...	48	0.025
11	gb|AC175487.3| Mus musculus chromosome 7, clone wi1-1426N22, com...	46	0.098
12	emb|AJ511874.1|MMU511874 Mus musculus partial Muc2 gene for secr...	46	0.098
13	gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cance...	44	0.39
14	gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Can...	44	0.39
15	gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H...	44	0.39
16	gb|AC108033.3| Homo sapiens BAC clone RP11-109M22 from 4, comple...	44	0.39
17	gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, comp...	44	0.39
18	ref|XM_629597.1| Dictyostelium discoideum inositol 5-phosphatase...	42	1.5
19	gb|AC136363.2| Homo sapiens chromosome 17, clone RP11-18L18, com...	42	1.5
20	gb|AC117233.3| Mus musculus BAC clone RP23-408M8 from 6, complet...	42	1.5
21	ref|XM_722716.1| Plasmodium yoelii yoelii str. 17XNL hypothetica...	42	1.5
22	ref|XM_735029.1| Plasmodium chabaudi chabaudi hypothetical prote...	42	1.5
23	ref|XM_674107.1| Plasmodium berghei strain ANKA hypothetical pro...	42	1.5
24	emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 o...	42	1.5
25	emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 i...	42	1.5
26	emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in...	42	1.5
27	gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Canc...	42	1.5
28	gb|AC011504.3| Homo sapiens chromosome 19 clone CTD-2001J20, com...	42	1.5
29	gb|AC019212.4|AC019212 Homo sapiens BAC clone RP11-462H12 from X...	42	1.5
30	gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, comple...	42	1.5
31	gb|AY184994.1| Dictyostelium discoideum inositol 5-phosphatase 3...	42	1.5
32	gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, co...	42	1.5
33	gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, com...	42	1.5
34	gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complet...	42	1.5
35	emb|AL929445.8| Mouse DNA sequence from clone RP23-185M22 on chr...	42	1.5
36	dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone...	42	1.5
37	gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome...	40	6.1
38	gb|AC106842.7| Mus musculus chromosome 7, clone RP24-165F13, com...	40	6.1
39	gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chr...	40	6.1
40	gb|AC109305.6| Mus musculus chromosome 1, clone RP24-350F5, comp...	40	6.1
41	gb|AC159806.2| Echinops telfairi, clone Echinops telfairi -24240...	40	6.1
42	ref|NM_007455.1| Mus musculus adaptor protein complex AP-1, gamm...	40	6.1
43	gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, comp...	40	6.1
44	gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome	40	6.1
45	ref|XM_568398.1| Cryptococcus neoformans var. neoformans JEC21 d...	40	6.1
46	gb|AC121575.4| Mus musculus BAC clone RP23-241P4 from 1, complet...	40	6.1
47	gb|AC116327.4| Mus musculus BAC clone RP24-68L14 from 7, complet...	40	6.1
48	gb|BC058402.1| Mus musculus adaptor protein complex AP-1, gamma ...	40	6.1
49	gb|AC006604.2| Caenorhabditis elegans cosmid C07F11, complete se...	40	6.1
50	gb|AC142300.1| Pan troglodytes BAC clone RP43-127J18 from 7, com...	40	6.1
51	gb|AC144591.10| Medicago truncatula clone mth2-5f17, complete se...	40	6.1
52	emb|AL590375.5| Human DNA sequence from clone RP11-546A8 on chro...	40	6.1
53	emb|AL357373.8| Human DNA sequence from clone RP11-414C16 on chr...	40	6.1
54	emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chr...	40	6.1
55	emb|AL139341.9| Human DNA sequence from clone RP11-99N20 on chro...	40	6.1
56	gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence	40	6.1
57	gb|AY152833.1| Felis catus clone BAC 244e2 major histocompatibli...	40	6.1
58	emb|AL161505.2|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, ...	40	6.1
59	gb|AC011476.8| Homo sapiens chromosome 19 clone CTC-550B14, comp...	40	6.1
60	gb|AC126178.6| Homo sapiens 12 BAC RP11-567C2 (Roswell Park Canc...	40	6.1
61	gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, comple...	40	6.1
62	dbj|AB232921.1| Oryzias latipes hox gene cluster, complete cds, ...	40	6.1
63	gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complet...	40	6.1
64	gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, comp...	40	6.1
65	dbj|AK147177.1| Mus musculus 16 days embryo kidney cDNA, RIKEN f...	40	6.1
66	dbj|AK151844.1| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	6.1
67	gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, comple...	40	6.1
68	emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 i...	40	6.1
69	dbj|AK052384.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu...	40	6.1
70	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
71	gb|AC146077.4| Pan troglodytes BAC clone RP43-45A15 from chromos...	40	6.1
72	gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosom...	40	6.1
73	gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, comple...	40	6.1
74	gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094...	40	6.1
75	gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone ...	40	6.1
76	emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in...	40	6.1
77	dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	6.1
78	emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chr...	40	6.1
79	gb|BC080798.1| Mus musculus adaptor protein complex AP-1, gamma ...	40	6.1
80	gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cance...	40	6.1
81	emb|AL442638.3|HS570H19 Homo sapiens chromosome 9 BAC RP11-570H1...	40	6.1
82	emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i...	40	6.1
83	gb|AF078820.2|AF078820 Nannospalax ehrenbergi high mobility grou...	40	6.1
84	gb|AC153991.3| Mus musculus 6 BAC RP24-541D10 (Roswell Park Canc...	40	6.1
85	gb|AF147262.1|F28D6 Arabidopsis thaliana BAC F28D6	40	6.1
86	gb|BC108374.1| Mus musculus adaptor protein complex AP-1, gamma ...	40	6.1
87	gb|AF068707.1|AF068707 Mus musculus gamma2-adaptin (G2ad) mRNA, ...	40	6.1
88	emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chro...	40	6.1
89	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	40	6.1
90	emb|AL157375.6| Human DNA sequence from clone RP1-133P16 on chro...	40	6.1
91	emb|CT025680.8| Mouse DNA sequence from clone RP24-84H10 on chro...	40	6.1
92	gb|AC006631.1| Caenorhabditis elegans cosmid F27B3, complete seq...	40	6.1
93	gb|AC011501.8| Homo sapiens chromosome 19 clone CTB-61M7, comple...	40	6.1

---

>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA
            polymerase subunit (rpo) genes
          Length = 21245

 Score =  375 bits (189), Expect = e-101
 Identities = 198/201 (98%)
 Strand = Plus / Plus

                                                                        
Query: 207  tatggaatagagtaccggtattttaccggaatccatacataaattgtattccctttttat 266
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5031 tatggaatagagtaccggtattttaccggaatccatacataaatcgtattccctttttat 5090

                                                                        
Query: 267  ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5091 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 5150

                                                                        
Query: 327  gaaagttgctcatataatacatacataattgtatgtataactataagaaaaaggaagaga 386
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5151 gaaagttggtcatataatacatacataattgtatgtataactataagaaaaaggaaggga 5210

                                 
Query: 387  aattgtataagattaagaaag 407
            |||||||||||||||||||||
Sbjct: 5211 aattgtataagattaagaaag 5231



 Score =  226 bits (114), Expect = 5e-56
 Identities = 156/172 (90%), Gaps = 4/172 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    cccatagggcacccttacttcacttttttattttgcatctctcattaaagagggagggaa 60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4860 cccacagggcacccttacttcacttttttattttgcatctctcattaaagaggcagggaa 4919

                                                                        
Query: 61   ggagtataggaannnnnnncactactcccgatcgataaagataaagaaagacacacatac 120
            || |||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4920 ggcgtataggaatttttttcactactcccgatcgataaagataaagaaagacacacatac 4979

                                                                
Query: 121  gatatgtggattagtagaattt----taggatattactctatctttctttat 168
            ||||||||||||||||||||||    ||  ||||||||||||||||||||||
Sbjct: 4980 gatatgtggattagtagaatttaggatattatattactctatctttctttat 5031



 Score =  101 bits (51), Expect = 2e-18
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                               
Query: 391  gtataagattaagaaagctcgtgggttagagatatagaaaagaaaaagtag 441
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 gtataagattaagaaagctcgtgggttagagatatagaaaagaaaaagtag 5281

---

>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score =  375 bits (189), Expect = e-101
 Identities = 198/201 (98%)
 Strand = Plus / Plus

                                                                         
Query: 207   tatggaatagagtaccggtattttaccggaatccatacataaattgtattccctttttat 266
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 16385 tatggaatagagtaccggtattttaccggaatccatacataaatcgtattccctttttat 16444

                                                                         
Query: 267   ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16445 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 16504

                                                                         
Query: 327   gaaagttgctcatataatacatacataattgtatgtataactataagaaaaaggaagaga 386
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16505 gaaagttggtcatataatacatacataattgtatgtataactataagaaaaaggaaggga 16564

                                  
Query: 387   aattgtataagattaagaaag 407
             |||||||||||||||||||||
Sbjct: 16565 aattgtataagattaagaaag 16585



 Score =  226 bits (114), Expect = 5e-56
 Identities = 156/172 (90%), Gaps = 4/172 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     cccatagggcacccttacttcacttttttattttgcatctctcattaaagagggagggaa 60
             |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16214 cccacagggcacccttacttcacttttttattttgcatctctcattaaagaggcagggaa 16273

                                                                         
Query: 61    ggagtataggaannnnnnncactactcccgatcgataaagataaagaaagacacacatac 120
             || |||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16274 ggcgtataggaatttttttcactactcccgatcgataaagataaagaaagacacacatac 16333

                                                                 
Query: 121   gatatgtggattagtagaattt----taggatattactctatctttctttat 168
             ||||||||||||||||||||||    ||  ||||||||||||||||||||||
Sbjct: 16334 gatatgtggattagtagaatttaggatattatattactctatctttctttat 16385



 Score =  101 bits (51), Expect = 2e-18
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                                
Query: 391   gtataagattaagaaagctcgtgggttagagatatagaaaagaaaaagtag 441
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16585 gtataagattaagaaagctcgtgggttagagatatagaaaagaaaaagtag 16635

---

>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
          Length = 140384

 Score =  206 bits (104), Expect = 5e-50
 Identities = 141/152 (92%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 290   acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 349
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17763 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 17822

                                                                         
Query: 350   cataattgtatgtataactataagaaaaaggaagagaaattgtataagattaagaaagct 409
             |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct: 17823 cataattgtatgtataactataagaaaaaggaagtgaaattggataaga-taagaaagat 17881

                                             
Query: 410   cgtgggttagagatatagaaaagaaaaagtag 441
               ||||||| | ||||||||||| ||||||||
Sbjct: 17882 tttgggttatacatatagaaaagcaaaagtag 17913



 Score =  123 bits (62), Expect = 5e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                         
Query: 164   tttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagtaccg 223
             ||||||||||||||| ||||||||||| ||||||||| ||| ||||| ||| ||||||||
Sbjct: 17378 tttatgatgataccaccctcatcttaacttcctattcgactcttatgaaatcgagtaccg 17437

                                       
Query: 224   gtattttaccggaatccatacataaa 249
             ||||||||||||||||||||||||||
Sbjct: 17438 gtattttaccggaatccatacataaa 17463



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                         
Query: 7     gggcacccttacttcactttt-ttattttgcatctctcattaaa 49
             ||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct: 17230 gggcacccttacttcacttttatttttttgcatttctcagtaaa 17273

---

>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome
          Length = 141182

 Score =  206 bits (104), Expect = 5e-50
 Identities = 141/152 (92%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 290   acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 349
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 79888 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 79947

                                                                         
Query: 350   cataattgtatgtataactataagaaaaaggaagagaaattgtataagattaagaaagct 409
             |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct: 79948 cataattgtatgtataactataagaaaaaggaagggaaattggataaga-taagaaagat 80006

                                             
Query: 410   cgtgggttagagatatagaaaagaaaaagtag 441
               ||||||| | ||||||||||| ||||||||
Sbjct: 80007 tttgggttatacatatagaaaagcaaaagtag 80038



 Score =  121 bits (61), Expect = 2e-24
 Identities = 129/150 (86%), Gaps = 5/150 (3%)
 Strand = Plus / Plus

                                                                         
Query: 100   gataaagaaagacacacatacgatatgtggattagtagaattttaggatattactctatc 159
             ||||| ||||| || |||||  ||| ||||||||||| ||||| |||||| |||||||| 
Sbjct: 79435 gataaggaaaggcatacatatcatacgtggattagtataattt-aggatactactctatt 79493

                                                                         
Query: 160   tttctttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagt 219
             |||    ||||| |||||| ||||||||||| ||||||||| ||| ||||| ||| ||||
Sbjct: 79494 ttt----atgattataccaccctcatcttaacttcctattcgactcttatgaaatcgagt 79549

                                           
Query: 220   accggtattttaccggaatccatacataaa 249
             ||||||||||||||||||||||||||||||
Sbjct: 79550 accggtattttaccggaatccatacataaa 79579



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                         
Query: 7     gggcacccttacttcactttt-ttattttgcatctctcattaaa 49
             ||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct: 79347 gggcacccttacttcacttttctttttttgcatttctcagtaaa 79390

---

>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome
          Length = 140454

 Score =  206 bits (104), Expect = 5e-50
 Identities = 141/152 (92%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 290   acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 349
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17755 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 17814

                                                                         
Query: 350   cataattgtatgtataactataagaaaaaggaagagaaattgtataagattaagaaagct 409
             |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct: 17815 cataattgtatgtataactataagaaaaaggaagtgaaattggataaga-taagaaagat 17873

                                             
Query: 410   cgtgggttagagatatagaaaagaaaaagtag 441
               ||||||| | ||||||||||| ||||||||
Sbjct: 17874 tttgggttatacatatagaaaagcaaaagtag 17905



 Score =  123 bits (62), Expect = 5e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                         
Query: 164   tttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagtaccg 223
             ||||||||||||||| ||||||||||| ||||||||| ||| ||||| ||| ||||||||
Sbjct: 17370 tttatgatgataccaccctcatcttaacttcctattcgactcttatgaaatcgagtaccg 17429

                                       
Query: 224   gtattttaccggaatccatacataaa 249
             ||||||||||||||||||||||||||
Sbjct: 17430 gtattttaccggaatccatacataaa 17455



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                         
Query: 7     gggcacccttacttcactttt-ttattttgcatctctcattaaa 49
             ||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct: 17222 gggcacccttacttcacttttatttttttgcatttctcagtaaa 17265

---

>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome
          Length = 141182

 Score =  206 bits (104), Expect = 5e-50
 Identities = 141/152 (92%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 290   acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 349
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18261 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 18320

                                                                         
Query: 350   cataattgtatgtataactataagaaaaaggaagagaaattgtataagattaagaaagct 409
             |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct: 18321 cataattgtatgtataactataagaaaaaggaagggaaattggataaga-taagaaagat 18379

                                             
Query: 410   cgtgggttagagatatagaaaagaaaaagtag 441
               ||||||| | ||||||||||| ||||||||
Sbjct: 18380 tttgggttatacatatagaaaagcaaaagtag 18411



 Score =  121 bits (61), Expect = 2e-24
 Identities = 129/150 (86%), Gaps = 5/150 (3%)
 Strand = Plus / Plus

                                                                         
Query: 100   gataaagaaagacacacatacgatatgtggattagtagaattttaggatattactctatc 159
             ||||| ||||| || |||||  ||| ||||||||||| ||||| |||||| |||||||| 
Sbjct: 17808 gataaggaaaggcatacatatcatacgtggattagtataattt-aggatactactctatt 17866

                                                                         
Query: 160   tttctttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagt 219
             |||    ||||| |||||| ||||||||||| ||||||||| ||| ||||| ||| ||||
Sbjct: 17867 ttt----atgattataccaccctcatcttaacttcctattcgactcttatgaaatcgagt 17922

                                           
Query: 220   accggtattttaccggaatccatacataaa 249
             ||||||||||||||||||||||||||||||
Sbjct: 17923 accggtattttaccggaatccatacataaa 17952



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                         
Query: 7     gggcacccttacttcactttt-ttattttgcatctctcattaaa 49
             ||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct: 17720 gggcacccttacttcacttttctttttttgcatttctcagtaaa 17763

---

>gb|M16840.1|WHTCPCA2 Wheat Asp-tRNA gene
          Length = 559

 Score =  196 bits (99), Expect = 4e-47
 Identities = 150/166 (90%), Gaps = 6/166 (3%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggcaccctt-acttcacttttttattttgcatctctcattaaagagggagggaaggagta 66
           ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 386 ggcacccttgacttcacttttttattttgcatctctcattaaagaggcagggaaggcgta 445

                                                                       
Query: 67  taggaannnnnnncactactcccgatcgataaagataaagaaagacacacatacgatatg 126
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taggaatttttt-cactactcccgatcgataaagataaagaaagacacacatacgatatg 504

                                                         
Query: 127 tggattagtagaattt----taggatattactctatctttctttat 168
           ||||||||||||||||    ||  ||||||||||||||||||||||
Sbjct: 505 tggattagtagaatttaggatattatattactctatctttctttat 550

---

>gb|AY694133.1| Pennisetum glaucum clone PGE123 photosystem II low MW protein
           (psbM) gene, complete cds; chloroplast
          Length = 653

 Score =  101 bits (51), Expect = 2e-18
 Identities = 88/99 (88%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                       
Query: 343 atacatacataattgtatgtataactataagaaaaaggaagagaaattgtataagattaa 402
           |||||||||||||||||||||||| |||||||||||||||  ||||||| |||||| |||
Sbjct: 482 atacatacataattgtatgtataattataagaaaaaggaaaggaaattggataaga-taa 424

                                                  
Query: 403 gaaagctcgtgggttagagatatagaaaagaaaaagtag 441
           ||||| |  ||||||| | ||||||||||| ||||||||
Sbjct: 423 gaaagattttgggttatacatatagaaaagcaaaagtag 385

---

>gb|AC007132.3| Homo sapiens BAC clone RP11-444A22 from 2, complete sequence
          Length = 157779

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 339    tataatacatacataattgtatgtat 364
              ||||||||||||||||||||||||||
Sbjct: 128115 tataatacatacataattgtatgtat 128090

---

>emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, complete sequence
          Length = 174414

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 105    agaaagacacacatacgatatgtggatt 132
              |||||||||||||||||| |||||||||
Sbjct: 174304 agaaagacacacatacgacatgtggatt 174331

---

>gb|AC175487.3| Mus musculus chromosome 7, clone wi1-1426N22, complete sequence
          Length = 41781

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 338  atataatacatacataattgtatgtat 364
            |||||||||||||||||||| ||||||
Sbjct: 5587 atataatacatacataattggatgtat 5561

---

>emb|AJ511874.1|MMU511874 Mus musculus partial Muc2 gene for secreted gel-forming mucin,
           exons 39-47
          Length = 4200

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 338 atataatacatacataattgtatgtat 364
           |||||||||||||||||||| ||||||
Sbjct: 113 atataatacatacataattggatgtat 87

---

>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197962

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 343   atacatacataattgtatgtat 364
             ||||||||||||||||||||||
Sbjct: 30616 atacatacataattgtatgtat 30595

---

>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 230186

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 343    atacatacataattgtatgtat 364
              ||||||||||||||||||||||
Sbjct: 118984 atacatacataattgtatgtat 119005

---

>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence
          Length = 159611

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 370   taagaaaaaggaagagaaattgtata 395
             ||||||||||||||| ||||||||||
Sbjct: 38261 taagaaaaaggaagaaaaattgtata 38236

---

>gb|AC108033.3| Homo sapiens BAC clone RP11-109M22 from 4, complete sequence
          Length = 84994

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 338   atataatacatacataattgtatgtataactata 371
             |||||||||| ||| |||| ||||||||||||||
Sbjct: 42997 atataatacaaacacaattatatgtataactata 43030

---

>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence
          Length = 160358

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 370   taagaaaaaggaagagaaattgtata 395
             ||||||||||||||| ||||||||||
Sbjct: 52063 taagaaaaaggaagaaaaattgtata 52088

---

>ref|XM_629597.1| Dictyostelium discoideum inositol 5-phosphatase (DDB0185180), partial
            mRNA
          Length = 4140

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 91   atcgataaagataaagaaaga 111
            |||||||||||||||||||||
Sbjct: 2680 atcgataaagataaagaaaga 2700

---

>gb|AC136363.2| Homo sapiens chromosome 17, clone RP11-18L18, complete sequence
          Length = 87532

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 341   taatacatacataattgtatgtata 365
             |||||||||||||| ||||||||||
Sbjct: 49187 taatacatacataaatgtatgtata 49163

---

>gb|AC117233.3| Mus musculus BAC clone RP23-408M8 from 6, complete sequence
          Length = 187083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 342    aatacatacataattgtatgtataa 366
              ||||||||||||||| |||||||||
Sbjct: 144379 aatacatacataattctatgtataa 144403

---

>ref|XM_722716.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00931)
           partial mRNA
          Length = 2418

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 420 agatatagaaaagaaaaagta 440
           |||||||||||||||||||||
Sbjct: 156 agatatagaaaagaaaaagta 176

---

>ref|XM_735029.1| Plasmodium chabaudi chabaudi hypothetical protein (PC107916.00.0)
           partial mRNA
          Length = 948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 420 agatatagaaaagaaaaagta 440
           |||||||||||||||||||||
Sbjct: 156 agatatagaaaagaaaaagta 176

---

>ref|XM_674107.1| Plasmodium berghei strain ANKA hypothetical protein (PB102048.00.0)
           partial mRNA
          Length = 1945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 420 agatatagaaaagaaaaagta 440
           |||||||||||||||||||||
Sbjct: 150 agatatagaaaagaaaaagta 170

---

>emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 on chromosome 6q16.3-21
             Contains a novel gene and a chromatin assembly factor 1
             p60 subunit (CHAF1B) pseudogene, complete sequence
          Length = 136299

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    ttcacttttttattttgcatc 39
             |||||||||||||||||||||
Sbjct: 26939 ttcacttttttattttgcatc 26919

---

>emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 in linkage group 17,
             complete sequence
          Length = 161999

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   ataagaaaaaggaagagaaat 389
             |||||||||||||||||||||
Sbjct: 23366 ataagaaaaaggaagagaaat 23386

---

>emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in linkage group 11,
              complete sequence
          Length = 212880

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    aaattgtattccctttttatt 267
              |||||||||||||||||||||
Sbjct: 104251 aaattgtattccctttttatt 104271

---

>gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170215

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 24    ttttttattttgcatctctcattaaagag 52
             |||||||||||| |||||||||| |||||
Sbjct: 47265 ttttttattttgaatctctcattcaagag 47293

---

>gb|AC011504.3| Homo sapiens chromosome 19 clone CTD-2001J20, complete sequence
          Length = 137075

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 343   atacatacataattgtatgtataac 367
             |||||||||||||| ||||||||||
Sbjct: 62625 atacatacataattatatgtataac 62649

---

>gb|AC019212.4|AC019212 Homo sapiens BAC clone RP11-462H12 from X, complete sequence
          Length = 213793

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 19     ttcacttttttattttgcatctctc 43
              |||||||||||||||||| ||||||
Sbjct: 170922 ttcacttttttattttgcttctctc 170898

---

>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence
          Length = 209613

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 91    atcgataaagataaagaaagacaca 115
             ||||||||||||| |||||||||||
Sbjct: 41570 atcgataaagatatagaaagacaca 41546

---

>gb|AY184994.1| Dictyostelium discoideum inositol 5-phosphatase 3 gene, complete cds
          Length = 4325

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 91   atcgataaagataaagaaaga 111
            |||||||||||||||||||||
Sbjct: 2865 atcgataaagataaagaaaga 2885

---

>gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, complete sequence
          Length = 158329

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 341   taatacatacataattgtatgtata 365
             |||||||||||||| ||||||||||
Sbjct: 66690 taatacatacataaatgtatgtata 66666

---

>gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, complete sequence
          Length = 173767

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   ttctactgcttatttggatgt 312
             |||||||||||||||||||||
Sbjct: 14819 ttctactgcttatttggatgt 14839

---

>gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complete sequence
          Length = 189070

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 342   aatacatacataattgtatgtataa 366
             ||||||||||||||| |||||||||
Sbjct: 87311 aatacatacataattctatgtataa 87335

---

>emb|AL929445.8| Mouse DNA sequence from clone RP23-185M22 on chromosome 4, complete
             sequence
          Length = 203623

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 364   taactataagaaaaaggaaga 384
             |||||||||||||||||||||
Sbjct: 27564 taactataagaaaaaggaaga 27584

---

>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
             complete sequence
          Length = 33254

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   ataactataagaaaaaggaag 383
             |||||||||||||||||||||
Sbjct: 15125 ataactataagaaaaaggaag 15145

---

>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence
          Length = 216566

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aagataaagaaagacacaca 117
              ||||||||||||||||||||
Sbjct: 167714 aagataaagaaagacacaca 167733

---

>gb|AC106842.7| Mus musculus chromosome 7, clone RP24-165F13, complete sequence
          Length = 140252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   catacataattgtatgtata 365
             ||||||||||||||||||||
Sbjct: 61610 catacataattgtatgtata 61591

---

>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    gaaaaaggaagagaaattgt 392
              ||||||||||||||||||||
Sbjct: 274199 gaaaaaggaagagaaattgt 274218

---

>gb|AC109305.6| Mus musculus chromosome 1, clone RP24-350F5, complete sequence
          Length = 184088

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   tacatacataattgtatgta 363
             ||||||||||||||||||||
Sbjct: 26070 tacatacataattgtatgta 26089

---

>gb|AC159806.2| Echinops telfairi, clone Echinops telfairi -24240357J7, complete
             sequence
          Length = 38387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   aatccatacataaattgtat 255
             ||||||||||||||||||||
Sbjct: 25287 aatccatacataaattgtat 25268

---

>ref|NM_007455.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit (Ap1g2),
            mRNA
          Length = 2599

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1801 ttaaagagggagggaaggag 1820

---

>gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, complete sequence
          Length = 253338

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    atataatacatacataattg 357
              ||||||||||||||||||||
Sbjct: 185504 atataatacatacataattg 185523

---

>gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome
          Length = 359853

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   ttagagatatagaaaagaaa 435
             ||||||||||||||||||||
Sbjct: 61557 ttagagatatagaaaagaaa 61538

---

>ref|XM_568398.1| Cryptococcus neoformans var. neoformans JEC21 delayed-type
            hypersensitivity antigen - related (CNM00910) partial
            mRNA
          Length = 1349

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  gaaaaaggaagagaaattgt 392
            ||||||||||||||||||||
Sbjct: 1137 gaaaaaggaagagaaattgt 1156

---

>gb|AC121575.4| Mus musculus BAC clone RP23-241P4 from 1, complete sequence
          Length = 193725

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   tacatacataattgtatgta 363
             ||||||||||||||||||||
Sbjct: 55156 tacatacataattgtatgta 55175

---

>gb|AC116327.4| Mus musculus BAC clone RP24-68L14 from 7, complete sequence
          Length = 194290

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 375    aaaaggaagagaaattgtataaga 398
              ||||| ||||||||||||||||||
Sbjct: 146370 aaaagaaagagaaattgtataaga 146347

---

>gb|BC058402.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA
            (cDNA clone IMAGE:6817446), partial cds
          Length = 2720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1846 ttaaagagggagggaaggag 1865

---

>gb|AC006604.2| Caenorhabditis elegans cosmid C07F11, complete sequence
          Length = 41061

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   tagagatatagaaaagaaaa 436
             ||||||||||||||||||||
Sbjct: 13299 tagagatatagaaaagaaaa 13280

---

>gb|AC142300.1| Pan troglodytes BAC clone RP43-127J18 from 7, complete sequence
          Length = 142598

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    atacatacataattgtatgt 362
              ||||||||||||||||||||
Sbjct: 137135 atacatacataattgtatgt 137116

---

>gb|AC144591.10| Medicago truncatula clone mth2-5f17, complete sequence
          Length = 128352

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    tataagaaaaaggaagagaa 387
              ||||||||||||||||||||
Sbjct: 100041 tataagaaaaaggaagagaa 100022

---

>emb|AL590375.5| Human DNA sequence from clone RP11-546A8 on chromosome X, complete
             sequence
          Length = 63324

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   atatagaaaagaaaaagtag 441
             ||||||||||||||||||||
Sbjct: 37506 atatagaaaagaaaaagtag 37487

---

>emb|AL357373.8| Human DNA sequence from clone RP11-414C16 on chromosome 1 Contains part
             of the DAB1 gene for disabled homolog 1 (Drosophila) and a
             novel pseudogene, complete sequence
          Length = 87340

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   atacatacataattgtatgtataa 366
             |||||||||||||| |||||||||
Sbjct: 44175 atacatacataattatatgtataa 44152

---

>emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chromosome 1q31.1-31.3,
             complete sequence
          Length = 107328

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 345   acatacataattgtatgtataactataa 372
             |||||||||||| ||||||||| |||||
Sbjct: 97523 acatacataattttatgtataattataa 97496

---

>emb|AL139341.9| Human DNA sequence from clone RP11-99N20 on chromosome 10 Contains the
             5' end of a novel gene, the gene for glutathione
             transferase omega 1 (GSTO1), the 5' end of a variant of
             the gene for a novel glutathione-S-transferase and two CpG
             islands, complete sequence
          Length = 104378

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   acttctactgcttatttgga 309
             ||||||||||||||||||||
Sbjct: 34634 acttctactgcttatttgga 34653

---

>gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence
          Length = 220468

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   atataatacatacataattg 357
             ||||||||||||||||||||
Sbjct: 42681 atataatacatacataattg 42700

---

>gb|AY152833.1| Felis catus clone BAC 244e2 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 147595

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   aactataagaaaaaggaaga 384
             ||||||||||||||||||||
Sbjct: 37191 aactataagaaaaaggaaga 37210

---

>emb|AL161505.2|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 17
          Length = 198176

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    attgtattccctttttattt 268
              ||||||||||||||||||||
Sbjct: 139560 attgtattccctttttattt 139541

---

>gb|AC011476.8| Homo sapiens chromosome 19 clone CTC-550B14, complete sequence
          Length = 187064

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   atacatacataattgtatgt 362
             ||||||||||||||||||||
Sbjct: 10286 atacatacataattgtatgt 10305

---

>gb|AC126178.6| Homo sapiens 12 BAC RP11-567C2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    aaagagggagggaaggagta 66
             ||||||||||||||||||||
Sbjct: 55988 aaagagggagggaaggagta 55969

---

>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence
          Length = 219357

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tcttttccccatctcacttc 294
             ||||||||||||||||||||
Sbjct: 14754 tcttttccccatctcacttc 14735

---

>dbj|AB232921.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBb
          Length = 80562

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   acatacataattgtatgtat 364
             ||||||||||||||||||||
Sbjct: 79059 acatacataattgtatgtat 79040

---

>gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complete sequence
          Length = 193650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    cttcacttttttattttgca 37
             ||||||||||||||||||||
Sbjct: 21080 cttcacttttttattttgca 21099

---

>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence
          Length = 168708

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   ataatacatacataattgta 359
             ||||||||||||||||||||
Sbjct: 66650 ataatacatacataattgta 66669

---

>dbj|AK147177.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched
            library, clone:I920194L06 product:adaptor protein complex
            AP-1, gamma 2 subunit, full insert sequence
          Length = 2640

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1840 ttaaagagggagggaaggag 1859

---

>dbj|AK151844.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830040H14 product:adaptor protein complex
            AP-1, gamma 2 subunit, full insert sequence
          Length = 2505

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1832 ttaaagagggagggaaggag 1851

---

>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence
          Length = 114005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ataatacatacataattgta 359
             ||||||||||||||||||||
Sbjct: 56555 ataatacatacataattgta 56536

---

>emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 in linkage group 5,
              complete sequence
          Length = 204094

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 338    atataatacatacataattgtatgtata 365
              |||||||||||||||| |||| ||||||
Sbjct: 156421 atataatacatacatatttgtgtgtata 156448

---

>dbj|AK052384.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330046K02 product:adaptor protein complex
            AP-1, gamma 2 subunit, full insert sequence
          Length = 3029

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1955 ttaaagagggagggaaggag 1974

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      acttctactgcttatttgga 309
                ||||||||||||||||||||
Sbjct: 17016515 acttctactgcttatttgga 17016496

---

>gb|AC146077.4| Pan troglodytes BAC clone RP43-45A15 from chromosome 7, complete sequence
          Length = 188174

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    atacatacataattgtatgt 362
              ||||||||||||||||||||
Sbjct: 145265 atacatacataattgtatgt 145284

---

>gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosome 14, complete sequence
          Length = 217099

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ttaaagagggagggaaggag 64
              ||||||||||||||||||||
Sbjct: 149192 ttaaagagggagggaaggag 149173

---

>gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, complete sequence
          Length = 223367

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 338   atataatacatacataattgtatgtata 365
             |||||||| ||||||| |||||||||||
Sbjct: 46330 atataatatatacatagttgtatgtata 46303

---

>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
             sequence
          Length = 135216

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   acttctactgcttatttgga 309
             ||||||||||||||||||||
Sbjct: 57007 acttctactgcttatttgga 56988

---

>gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone rp23-80d20, complete
              sequence
          Length = 247089

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tccatacataaattgtattc 257
              ||||||||||||||||||||
Sbjct: 206479 tccatacataaattgtattc 206498

---

>emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in linkage group 17,
              complete sequence
          Length = 161483

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    ttactctatctttctttatgatga 173
              |||||||| |||||||||||||||
Sbjct: 129573 ttactctaactttctttatgatga 129596

---

>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    aaaaggaagagaaattgtat 394
              ||||||||||||||||||||
Sbjct: 276267 aaaaggaagagaaattgtat 276286

---

>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete
            sequence
          Length = 205765

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 329  aagttgctcatataatacatacat 352
            |||||||||||||| |||||||||
Sbjct: 9243 aagttgctcatatactacatacat 9266

---

>gb|BC080798.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA
            (cDNA clone IMAGE:4953412), containing frame-shift errors
          Length = 2599

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1748 ttaaagagggagggaaggag 1767

---

>gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206412

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   agagatatagaaaagaaaaa 437
             ||||||||||||||||||||
Sbjct: 33957 agagatatagaaaagaaaaa 33976

---

>emb|AL442638.3|HS570H19 Homo sapiens chromosome 9 BAC RP11-570H19, complete sequence
          Length = 188247

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    atatgtggattagtagaatt 141
              ||||||||||||||||||||
Sbjct: 115304 atatgtggattagtagaatt 115323

---

>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
             complete sequence
          Length = 191582

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ataaagaaagacacacatac 120
             ||||||||||||||||||||
Sbjct: 32483 ataaagaaagacacacatac 32502

---

>gb|AF078820.2|AF078820 Nannospalax ehrenbergi high mobility group protein (HMG1) gene,
            complete cds
          Length = 2193

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  cctcatcttaatttcctatt 199
            ||||||||||||||||||||
Sbjct: 1154 cctcatcttaatttcctatt 1173

---

>gb|AC153991.3| Mus musculus 6 BAC RP24-541D10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202289

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    agagatatagaaaagaaaaa 437
              ||||||||||||||||||||
Sbjct: 133713 agagatatagaaaagaaaaa 133732

---

>gb|AF147262.1|F28D6 Arabidopsis thaliana BAC F28D6
          Length = 112629

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   attgtattccctttttattt 268
             ||||||||||||||||||||
Sbjct: 76468 attgtattccctttttattt 76449

---

>gb|BC108374.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA
            (cDNA clone MGC:118107 IMAGE:4936738), complete cds
          Length = 2670

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1827 ttaaagagggagggaaggag 1846

---

>gb|AF068707.1|AF068707 Mus musculus gamma2-adaptin (G2ad) mRNA, complete cds
          Length = 2599

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   ttaaagagggagggaaggag 64
            ||||||||||||||||||||
Sbjct: 1801 ttaaagagggagggaaggag 1820

---

>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete
              sequence
          Length = 218673

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aagataaagaaagacacaca 117
              ||||||||||||||||||||
Sbjct: 211543 aagataaagaaagacacaca 211524

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 290      acttctactgcttatttgga 309
                ||||||||||||||||||||
Sbjct: 17025555 acttctactgcttatttgga 17025536

---

>emb|AL157375.6| Human DNA sequence from clone RP1-133P16 on chromosome 6 Contains the
            ARF1 (ADP-ribosylation factor 1) gene, ESTs, STSs and
            GSSs, complete sequence
          Length = 65763

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  atacatacataattgtatgt 362
            ||||||||||||||||||||
Sbjct: 5963 atacatacataattgtatgt 5944

---

>emb|CT025680.8| Mouse DNA sequence from clone RP24-84H10 on chromosome 9, complete
              sequence
          Length = 243795

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tccatacataaattgtattc 257
              ||||||||||||||||||||
Sbjct: 144981 tccatacataaattgtattc 145000

---

>gb|AC006631.1| Caenorhabditis elegans cosmid F27B3, complete sequence
          Length = 30767

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ataaattgtattcccttttt 264
            ||||||||||||||||||||
Sbjct: 6087 ataaattgtattcccttttt 6106

---

>gb|AC011501.8| Homo sapiens chromosome 19 clone CTB-61M7, complete sequence
          Length = 161218

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    atacatacataattgtatgt 362
              ||||||||||||||||||||
Sbjct: 158621 atacatacataattgtatgt 158640


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,723,844
Number of Sequences: 3902068
Number of extensions: 7723844
Number of successful extensions: 198586
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198143
Number of HSP's gapped (non-prelim): 431
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---