Clone Name | basd2o23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_465422.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2750 Score = 289 bits (146), Expect = 5e-75 Identities = 385/462 (83%), Gaps = 2/462 (0%) Strand = Plus / Plus Query: 98 agatgaatttggagtacttccctattgattcccagggtttcataactgaccatgaaaggg 157 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | Sbjct: 876 agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935 Query: 158 cattggaagagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 216 ||||||| |||||||| |||| | ||| || |||| |||| ||||||||||||||| Sbjct: 936 cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994 Query: 217 aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 276 || ||||||||||||| ||||||||||| |||||||||||||||||||| || | ||| Sbjct: 995 aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054 Query: 277 cactaccgcattgccaagaccattgatgcttctacaatgacaacactaagggacatggta 336 |||||||| | |||||||| |||||||||||| || |||||||||| | || | || Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacactacgagatttagtg 1114 Query: 337 cccacaaagattgctgctggtgtatggaattatctctccaaatataaaacgtcaattcct 396 || ||||| ||||||||| ||| ||||||| || || |||| ||||| ||||| || Sbjct: 1115 cctacaaaacttgctgctgctgtttggaattgcctttcaaaattgaaaacatcaataccg 1174 Query: 397 gaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcagatt 456 || | || || || || || ||||| || || ||||| || ||||||||||| |||||| Sbjct: 1175 gattatcctcaaactgagacatgtgagctacttatagttgatcgttcagtagaccagatt 1234 Query: 457 gcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgcatggat 516 |||||||| |||||||||||||| ||||| || |||||||||||||| ||||| |||||| Sbjct: 1235 gcaccaatcattcatgaatggacatatgacgcgatgtgccatgatcttctatgtatggat 1294 Query: 517 ggtaacaagtacgtacatgaggtttcaagtaaaaatggttca 558 || |||||||| || ||||||||| | ||||||||||||||| Sbjct: 1295 ggcaacaagtatgtccatgaggttccgagtaaaaatggttca 1336 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 14 tttttagttctcccatacagaaagacttagttgctcaaataaaaagggattcaagtatat 73 |||| |||||||||||||||||||| |||||| |||||||||||| ||||||||| || Sbjct: 685 ttttcagttctcccatacagaaagaattagttactcaaataaaaaaagattcaagtgtac 744 Query: 74 tacctcgtattggtgcactcagtgag 99 |||| |||||||||||||| |||||| Sbjct: 745 taccccgtattggtgcacttagtgag 770
>dbj|AK111848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148D21, full insert sequence Length = 2751 Score = 289 bits (146), Expect = 5e-75 Identities = 385/462 (83%), Gaps = 2/462 (0%) Strand = Plus / Plus Query: 98 agatgaatttggagtacttccctattgattcccagggtttcataactgaccatgaaaggg 157 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | Sbjct: 876 agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935 Query: 158 cattggaagagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 216 ||||||| |||||||| |||| | ||| || |||| |||| ||||||||||||||| Sbjct: 936 cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994 Query: 217 aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 276 || ||||||||||||| ||||||||||| |||||||||||||||||||| || | ||| Sbjct: 995 aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054 Query: 277 cactaccgcattgccaagaccattgatgcttctacaatgacaacactaagggacatggta 336 |||||||| | |||||||| |||||||||||| || |||||||||| | || | || Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacactacgagatttagtg 1114 Query: 337 cccacaaagattgctgctggtgtatggaattatctctccaaatataaaacgtcaattcct 396 || ||||| ||||||||| ||| ||||||| || || |||| ||||| ||||| || Sbjct: 1115 cctacaaaacttgctgctgctgtttggaattgcctttcaaaattgaaaacatcaataccg 1174 Query: 397 gaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcagatt 456 || | || || || || || ||||| || || ||||| || ||||||||||| |||||| Sbjct: 1175 gattatcctcaaactgagacatgtgagctacttatagttgatcgttcagtagaccagatt 1234 Query: 457 gcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgcatggat 516 |||||||| |||||||||||||| ||||| || |||||||||||||| ||||| |||||| Sbjct: 1235 gcaccaatcattcatgaatggacatatgacgcgatgtgccatgatcttctatgtatggat 1294 Query: 517 ggtaacaagtacgtacatgaggtttcaagtaaaaatggttca 558 || |||||||| || ||||||||| | ||||||||||||||| Sbjct: 1295 ggcaacaagtatgtccatgaggttccgagtaaaaatggttca 1336 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 14 tttttagttctcccatacagaaagacttagttgctcaaataaaaagggattcaagtatat 73 |||| |||||||||||||||||||| |||||| |||||||||||| ||||||||| || Sbjct: 685 ttttcagttctcccatacagaaagaattagttactcaaataaaaaaagattcaagtgtac 744 Query: 74 tacctcgtattggtgcactcagtgag 99 |||| |||||||||||||| |||||| Sbjct: 745 taccccgtattggtgcacttagtgag 770
>ref|XM_471317.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1998 Score = 137 bits (69), Expect = 4e-29 Identities = 126/145 (86%) Strand = Plus / Plus Query: 223 atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 282 ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 562 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 621 Query: 283 cgcattgccaagaccattgatgcttctacaatgacaacactaagggacatggtacccaca 342 || |||||| ||| |||||||||||||| ||||||||||| | || ||| ||||||| Sbjct: 622 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 681 Query: 343 aagattgctgctggtgtatggaatt 367 ||| ||||||||||||| ||||||| Sbjct: 682 aagcttgctgctggtgtgtggaatt 706 Score = 135 bits (68), Expect = 2e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 394 cctgaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcag 453 ||||||||||| ||||| ||||| |||||| | || || |||||||| ||| |||||||| Sbjct: 733 cctgaattccctcagactgaaacatgtgaattacttatcgtagaccgatcaatagatcag 792 Query: 454 attgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgcatg 513 || |||||||| ||||| |||||||| |||||||||||||| |||||||| || |||||| Sbjct: 793 atcgcaccaattattcacgaatggacctatgatgccatgtgtcatgatctactctgcatg 852 Query: 514 gatggtaacaagtacgtaca 533 ||||| |||||||| ||||| Sbjct: 853 gatggcaacaagtatgtaca 872 Score = 48.1 bits (24), Expect = 0.032 Identities = 57/68 (83%) Strand = Plus / Plus Query: 85 ggtgcactcagtgagatgaatttggagtacttccctattgattcccagggtttcataact 144 ||||||||||||||||||||| |||| || || |||| ||| |||||| || | |||| Sbjct: 424 ggtgcactcagtgagatgaatctggaatattttgctatcgatagccagggctttacaact 483 Query: 145 gaccatga 152 |||||||| Sbjct: 484 gaccatga 491
>dbj|AK119369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H07, full insert sequence Length = 3904 Score = 137 bits (69), Expect = 4e-29 Identities = 126/145 (86%) Strand = Plus / Plus Query: 223 atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 282 ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1490 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 1549 Query: 283 cgcattgccaagaccattgatgcttctacaatgacaacactaagggacatggtacccaca 342 || |||||| ||| |||||||||||||| ||||||||||| | || ||| ||||||| Sbjct: 1550 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 1609 Query: 343 aagattgctgctggtgtatggaatt 367 ||| ||||||||||||| ||||||| Sbjct: 1610 aagcttgctgctggtgtgtggaatt 1634 Score = 135 bits (68), Expect = 2e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 394 cctgaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcag 453 ||||||||||| ||||| ||||| |||||| | || || |||||||| ||| |||||||| Sbjct: 1661 cctgaattccctcagactgaaacatgtgaattacttatcgtagaccgatcaatagatcag 1720 Query: 454 attgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgcatg 513 || |||||||| ||||| |||||||| |||||||||||||| |||||||| || |||||| Sbjct: 1721 atcgcaccaattattcacgaatggacctatgatgccatgtgtcatgatctactctgcatg 1780 Query: 514 gatggtaacaagtacgtaca 533 ||||| |||||||| ||||| Sbjct: 1781 gatggcaacaagtatgtaca 1800 Score = 48.1 bits (24), Expect = 0.032 Identities = 57/68 (83%) Strand = Plus / Plus Query: 85 ggtgcactcagtgagatgaatttggagtacttccctattgattcccagggtttcataact 144 ||||||||||||||||||||| |||| || || |||| ||| |||||| || | |||| Sbjct: 1352 ggtgcactcagtgagatgaatctggaatattttgctatcgatagccagggctttacaact 1411 Query: 145 gaccatga 152 |||||||| Sbjct: 1412 gaccatga 1419
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 452 agattgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgca 511 ||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| | Sbjct: 15051995 agattgcaccaatcattcatgaatggacatatgacgcgatgtgccatgatcttctatgta 15051936 Query: 512 tggatggtaacaagtacgtacatgaggt 539 ||||||| |||||||| || |||||||| Sbjct: 15051935 tggatggcaacaagtatgtccatgaggt 15051908 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 14 tttttagttctcccatacagaaagacttagttgctcaaataaaaagggattcaagtatat 73 |||| |||||||||||||||||||| |||||| |||||||||||| ||||||||| || Sbjct: 15055832 ttttcagttctcccatacagaaagaattagttactcaaataaaaaaagattcaagtgtac 15055773 Query: 74 tacctcgtattggtgcactcagtgag 99 |||| |||||||||||||| |||||| Sbjct: 15055772 taccccgtattggtgcacttagtgag 15055747 Score = 99.6 bits (50), Expect = 1e-17 Identities = 115/134 (85%), Gaps = 2/134 (1%) Strand = Plus / Minus Query: 130 cagggtttcataactgaccatgaaagggcattggaagagcttttctgtgagagtgcagaa 189 |||||||||| |||||||||||||| |||||||| |||||||| |||| | ||| Sbjct: 15054322 cagggtttcaccactgaccatgaaagagcattggaggagctttttagtgaaaatgcttt- 15054264 Query: 190 ggcttca-acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatt 248 || |||| |||| ||||||||||||||||| ||||||||||||| ||||||||||| || Sbjct: 15054263 ggattcacacaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtt 15054204 Query: 249 tgcatcaatgaggg 262 |||||||||||||| Sbjct: 15054203 tgcatcaatgaggg 15054190 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 98 agatgaatttggagtacttccctattgattcccagg 133 ||||||||||||||||||| ||||||||||||||| Sbjct: 15055641 agatgaatttggagtactttgctattgattcccagg 15055606 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 274 gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 324 ||||||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 15052278 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 15052228
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0533E11 Length = 150678 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 452 agattgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatgca 511 ||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| | Sbjct: 57776 agattgcaccaatcattcatgaatggacatatgacgcgatgtgccatgatcttctatgta 57717 Query: 512 tggatggtaacaagtacgtacatgaggt 539 ||||||| |||||||| || |||||||| Sbjct: 57716 tggatggcaacaagtatgtccatgaggt 57689 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 14 tttttagttctcccatacagaaagacttagttgctcaaataaaaagggattcaagtatat 73 |||| |||||||||||||||||||| |||||| |||||||||||| ||||||||| || Sbjct: 61613 ttttcagttctcccatacagaaagaattagttactcaaataaaaaaagattcaagtgtac 61554 Query: 74 tacctcgtattggtgcactcagtgag 99 |||| |||||||||||||| |||||| Sbjct: 61553 taccccgtattggtgcacttagtgag 61528 Score = 99.6 bits (50), Expect = 1e-17 Identities = 115/134 (85%), Gaps = 2/134 (1%) Strand = Plus / Minus Query: 130 cagggtttcataactgaccatgaaagggcattggaagagcttttctgtgagagtgcagaa 189 |||||||||| |||||||||||||| |||||||| |||||||| |||| | ||| Sbjct: 60103 cagggtttcaccactgaccatgaaagagcattggaggagctttttagtgaaaatgcttt- 60045 Query: 190 ggcttca-acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatt 248 || |||| |||| ||||||||||||||||| ||||||||||||| ||||||||||| || Sbjct: 60044 ggattcacacaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtt 59985 Query: 249 tgcatcaatgaggg 262 |||||||||||||| Sbjct: 59984 tgcatcaatgaggg 59971 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 98 agatgaatttggagtacttccctattgattcccagg 133 ||||||||||||||||||| ||||||||||||||| Sbjct: 61422 agatgaatttggagtactttgctattgattcccagg 61387 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 274 gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 324 ||||||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 58059 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 58009
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 450 tcagattgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatg 509 |||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| || || Sbjct: 97476 tcagatcgcaccaattattcacgaatggacctatgatgccatgtgtcatgatctactctg 97417 Query: 510 catggatggtaacaagtacgtaca 533 ||||||||| |||||||| ||||| Sbjct: 97416 catggatggcaacaagtatgtaca 97393 Score = 93.7 bits (47), Expect = 6e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 261 ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 320 ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||| Sbjct: 97802 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 97743 Query: 321 actaagggacatggtacccacaaagattgctgctggtgtatggaatt 367 |||| | || ||| |||||||||| ||||||||||||| ||||||| Sbjct: 97742 actacgagatttggcacccacaaagcttgctgctggtgtgtggaatt 97696 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 223 atggctactcgtatatctacagtatttgcatcaatgaggg 262 ||||| |||||||| |||||||||| ||||||||||||| Sbjct: 98763 atggccactcgtattgctacagtattcgcatcaatgaggg 98724 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Minus Query: 394 cctgaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcag 453 ||||||||||| ||||| ||||| |||||| | || || |||||||| ||| |||||||| Sbjct: 97669 cctgaattccctcagactgaaacatgtgaattacttatcgtagaccgatcaatagatcag 97610
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 450 tcagattgcaccaataattcatgaatggacttatgatgccatgtgccatgatctgctatg 509 |||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| || || Sbjct: 10002526 tcagatcgcaccaattattcacgaatggacctatgatgccatgtgtcatgatctactctg 10002467 Query: 510 catggatggtaacaagtacgtaca 533 ||||||||| |||||||| ||||| Sbjct: 10002466 catggatggcaacaagtatgtaca 10002443 Score = 93.7 bits (47), Expect = 6e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 261 ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 320 ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||| Sbjct: 10002852 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 10002793 Query: 321 actaagggacatggtacccacaaagattgctgctggtgtatggaatt 367 |||| | || ||| |||||||||| ||||||||||||| ||||||| Sbjct: 10002792 actacgagatttggcacccacaaagcttgctgctggtgtgtggaatt 10002746 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 223 atggctactcgtatatctacagtatttgcatcaatgaggg 262 ||||| |||||||| |||||||||| ||||||||||||| Sbjct: 10003813 atggccactcgtattgctacagtattcgcatcaatgaggg 10003774 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Minus Query: 394 cctgaattcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcag 453 ||||||||||| ||||| ||||| |||||| | || || |||||||| ||| |||||||| Sbjct: 10002719 cctgaattccctcagactgaaacatgtgaattacttatcgtagaccgatcaatagatcag 10002660
>dbj|AK100230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I19, full insert sequence Length = 2534 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 446 tagatcagattgcaccaataattcatgaatggacttatgatgccatgtgccatgatct 503 |||||||||| ||||| | |||||||||||||| |||||||| |||||||||||||| Sbjct: 829 tagatcagatagcacctgttattcatgaatggacctatgatgcaatgtgccatgatct 886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 74 tacctcgtattggtgcactcagtgagatgaatttggagtacttccctattgattcccagg 133 |||| |||||||||||||| || |||||||||||||||| ||| | ||||| |||| Sbjct: 463 taccacgtattggtgcactaagagagatgaatttggagttctttgcaattgacatgcagg 522 Query: 134 gtttcataactgaccatgaaagggcatt 161 | |||| |||||||||||| | |||||| Sbjct: 523 gattcacaactgaccatgacatggcatt 550
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 466 attcatgaatggacttatgatgccatgtgccatgatct 503 |||||||||||||| |||||||| |||||||||||||| Sbjct: 1904874 attcatgaatggacctatgatgcaatgtgccatgatct 1904837
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 466 attcatgaatggacttatgatgccatgtgccatgatct 503 |||||||||||||| |||||||| |||||||||||||| Sbjct: 33654 attcatgaatggacctatgatgcaatgtgccatgatct 33617
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 466 attcatgaatggacttatgatgccatgtgccatgatct 503 |||||||||||||| |||||||| |||||||||||||| Sbjct: 105352 attcatgaatggacctatgatgcaatgtgccatgatct 105315
>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence Length = 127132 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 469 catgaatggacttatgatgccatgtgccatgat 501 |||||||||||||||||||||||||||| |||| Sbjct: 110191 catgaatggacttatgatgccatgtgccgtgat 110159
>ref|NM_101108.2| Arabidopsis thaliana KEU (KEULE); protein transporter AT1G12360 (KEU) mRNA, complete cds Length = 2540 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 61 gattcaagtatattacctcgtattggtgcactcagtgagatgaatttggagtacttccct 120 ||||| ||| |||||||||| ||||| ||| | || |||||||||||||||| || | Sbjct: 699 gattcgagtgtattacctcggattggagcattgagagagatgaatttggagttttttgcc 758 Query: 121 attgattcccagggtttcataactgaccatga 152 |||||| ||||||||||||||| || ||||| Sbjct: 759 attgatagccagggtttcataaccgatcatga 790 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 469 catgaatggacttatgatgccatgtgccatgat 501 ||||| ||||| |||||||| |||||||||||| Sbjct: 1104 catgagtggacatatgatgctatgtgccatgat 1136
>gb|AF331066.1|AF331066 Arabidopsis thaliana KEULE mRNA, complete cds Length = 2001 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 61 gattcaagtatattacctcgtattggtgcactcagtgagatgaatttggagtacttccct 120 ||||| ||| |||||||||| ||||| ||| | || |||||||||||||||| || | Sbjct: 403 gattcgagtgtattacctcggattggagcattgagagagatgaatttggagttttttgcc 462 Query: 121 attgattcccagggtttcataactgaccatga 152 |||||| ||||||||||||||| || ||||| Sbjct: 463 attgatagccagggtttcataaccgatcatga 494 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 469 catgaatggacttatgatgccatgtgccatgat 501 ||||| ||||| |||||||| |||||||||||| Sbjct: 808 catgagtggacatatgatgctatgtgccatgat 840
>ref|NM_100081.3| Arabidopsis thaliana SEC1A; protein transporter AT1G02010 (SEC1A) mRNA, complete cds Length = 2556 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 400 ttcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcagattgca 459 ||||| ||||| ||||| ||||| || ||||| || || | ||||| |||||||| || Sbjct: 882 ttcccccagaccgaaacatgtgagctgctcattgtggatagatcagtggatcagatcgct 941 Query: 460 ccaataattcatgaatggacttatgatgccatgtgccatgatctgct 506 || || || || |||||||| |||||||| |||||||||||| |||| Sbjct: 942 cctatcatacacgaatggacctatgatgctatgtgccatgatttgct 988
>gb|AF335539.1|AF335539 Arabidopsis thaliana AtSec1a mRNA, partial cds Length = 1803 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 400 ttcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcagattgca 459 ||||| ||||| ||||| ||||| || ||||| || || | ||||| |||||||| || Sbjct: 613 ttcccccagaccgaaacatgtgagctgctcattgtggatagatcagtggatcagatcgct 672 Query: 460 ccaataattcatgaatggacttatgatgccatgtgccatgatctgct 506 || || || || |||||||| |||||||| |||||||||||| |||| Sbjct: 673 cctatcatacacgaatggacctatgatgctatgtgccatgatttgct 719
>emb|BX816413.1|CNS0AAKL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2556 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 400 ttcccgcagacagaaacttgtgaacttctcatagtagaccgttcagtagatcagattgca 459 ||||| ||||| ||||| ||||| || ||||| || || | ||||| |||||||| || Sbjct: 881 ttcccccagaccgaaacatgtgagctgctcattgtggatagatcagtggatcagatcgct 940 Query: 460 ccaataattcatgaatggacttatgatgccatgtgccatgatctgct 506 || || || || |||||||| |||||||| |||||||||||| |||| Sbjct: 941 cctatcatacacgaatggacctatgatgctatgtgccatgatttgct 987
>emb|BX324129.11| Zebrafish DNA sequence from clone CH211-221D5 in linkage group 2, complete sequence Length = 111186 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 199 aaatacaatgcttgtttgaatgca 222 |||||||||||||||||||||||| Sbjct: 65244 aaatacaatgcttgtttgaatgca 65221
>gb|AC020622.3|F22M8 Sequence of BAC F22M8 from Arabidopsis thaliana chromosome 1, complete sequence Length = 47295 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 472 gaatggacttatgatgccatgtgccatgatctgct 506 |||||||| |||||||| |||||||||||| |||| Sbjct: 45022 gaatggacctatgatgctatgtgccatgatttgct 45056
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence Length = 106973 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 472 gaatggacttatgatgccatgtgccatgatctgct 506 |||||||| |||||||| |||||||||||| |||| Sbjct: 209 gaatggacctatgatgctatgtgccatgatttgct 243
>gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, complete sequence Length = 165586 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 ggaattatctctccaaatata 382 ||||||||||||||||||||| Sbjct: 39769 ggaattatctctccaaatata 39749
>emb|BX321880.9| Zebrafish DNA sequence from clone CH211-281G13 in linkage group 1, complete sequence Length = 144139 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tctcccatacagaaagactta 42 ||||||||||||||||||||| Sbjct: 138540 tctcccatacagaaagactta 138560
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence Length = 118374 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 469 catgaatggacttatgatgccatgtgccatgat 501 ||||| ||||| |||||||| |||||||||||| Sbjct: 32851 catgagtggacatatgatgctatgtgccatgat 32883
>ref|NM_117282.2| Arabidopsis thaliana SEC1B; protein transporter AT4G12120 (SEC1B) mRNA, complete cds Length = 2404 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 acaaagattgctgctggtgtatggaatt 367 |||||| |||||||| |||||||||||| Sbjct: 945 acaaagcttgctgctagtgtatggaatt 972
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaggcttcaacaaatacaat 207 |||||||||||||||||||| Sbjct: 80709 aaggcttcaacaaatacaat 80690 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaggcttcaacaaatacaat 207 |||||||||||||||||||| Sbjct: 71895 aaggcttcaacaaatacaat 71876
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ttccccgtgtgcactaccgc 285 |||||||||||||||||||| Sbjct: 376632 ttccccgtgtgcactaccgc 376613
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gacttagttgctcaaataaa 56 |||||||||||||||||||| Sbjct: 7309 gacttagttgctcaaataaa 7290
>ref|XM_385962.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05786.1) partial mRNA Length = 5043 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 aatggttcagcctcaggaaa 569 |||||||||||||||||||| Sbjct: 1978 aatggttcagcctcaggaaa 1997
>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete sequence Length = 155342 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 atgcttgtttgaatgcaatggcta 229 ||||||||| |||||||||||||| Sbjct: 64236 atgcttgttagaatgcaatggcta 64259
>gb|AC124752.4| Mus musculus BAC clone RP23-283G18 from 13, complete sequence Length = 215435 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 tgtatggaattatctctccaaata 380 ||||||||| |||||||||||||| Sbjct: 172830 tgtatggaaatatctctccaaata 172853
>ref|XM_720609.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05267) partial mRNA Length = 3852 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tcaaataaaaagggattcaa 67 |||||||||||||||||||| Sbjct: 2926 tcaaataaaaagggattcaa 2945
>emb|AL591803.10| Human DNA sequence from clone RP11-758C21 on chromosome 6 Contains dehydrogenase/reductase (SDR family) member 6 (DHRS6) pseudogene, complete sequence Length = 90325 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 aaataaaaagggattcaagtatattacc 77 |||| ||||||||| ||||||||||||| Sbjct: 12703 aaattaaaagggatccaagtatattacc 12730
>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the 3'end of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820), the 5'end of a novel gene (KIAA0608) and a CpG island, complete sequence Length = 153449 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ccctattgattcccagggtt 136 |||||||||||||||||||| Sbjct: 63102 ccctattgattcccagggtt 63083
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33 Length = 190026 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 acaaagattgctgctggtgtatggaatt 367 |||||| |||||||| |||||||||||| Sbjct: 116289 acaaagcttgctgctagtgtatggaatt 116262
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project) Length = 107600 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 acaaagattgctgctggtgtatggaatt 367 |||||| |||||||| |||||||||||| Sbjct: 92459 acaaagcttgctgctagtgtatggaatt 92432
>gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159688 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 tttcaagtaaaaatggttca 558 |||||||||||||||||||| Sbjct: 63756 tttcaagtaaaaatggttca 63775
>gb|AY125522.1| Arabidopsis thaliana AT4g12120/F16J13_190 mRNA sequence Length = 2402 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 acaaagattgctgctggtgtatggaatt 367 |||||| |||||||| |||||||||||| Sbjct: 944 acaaagcttgctgctagtgtatggaatt 971
>gb|AE009912.1|AE009912 Pyrobaculum aerophilum strain IM2 section 167 of 201 of the complete genome Length = 10475 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgaatttggagtacttcc 118 |||||||||||||||||||| Sbjct: 1090 gatgaatttggagtacttcc 1109
>gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosome 13, complete sequence Length = 172051 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 tgtatggaattatctctccaaata 380 ||||||||| |||||||||||||| Sbjct: 31273 tgtatggaaatatctctccaaata 31296
>gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, complete sequence Length = 167135 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 attggtgcactcagtgagatgaat 105 |||||||||||| ||||||||||| Sbjct: 15244 attggtgcactctgtgagatgaat 15221
>gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, complete sequence Length = 166975 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 catcaatgagggaatttccccgtg 274 |||| ||||||||||||||||||| Sbjct: 33159 catccatgagggaatttccccgtg 33136
>gb|AY088783.1| Arabidopsis thaliana clone 94950 mRNA, complete sequence Length = 2400 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 acaaagattgctgctggtgtatggaatt 367 |||||| |||||||| |||||||||||| Sbjct: 941 acaaagcttgctgctagtgtatggaatt 968
>gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complete sequence Length = 109939 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctattgattcccagggtttc 138 |||||||||||||||||||| Sbjct: 45399 ctattgattcccagggtttc 45380
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gacttagttgctcaaataaa 56 |||||||||||||||||||| Sbjct: 7309 gacttagttgctcaaataaa 7290
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccattgatgcttctacaatg 315 |||||||||||||||||||| Sbjct: 1934225 ccattgatgcttctacaatg 1934206
>emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, complete sequence Length = 157310 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 aggcttcaacaaatacaatg 208 |||||||||||||||||||| Sbjct: 136162 aggcttcaacaaatacaatg 136181
>emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on chromosome 4, complete sequence Length = 116754 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 caaatataaaacgtcaattcctga 398 |||||||||||| ||||||||||| Sbjct: 101605 caaatataaaacctcaattcctga 101628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,608,841 Number of Sequences: 3902068 Number of extensions: 5608841 Number of successful extensions: 92694 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92414 Number of HSP's gapped (non-prelim): 277 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)