ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA 466 e-128
2dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 466 e-128
3gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence 317 2e-83
4gb|AY109859.1| Zea mays CL21031_1 mRNA sequence 198 2e-47
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 182 9e-43
6dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 182 9e-43
7dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 182 9e-43
8gb|AY532658.1| Nicotiana tabacum putative pyridoxine biosynthesi... 78 4e-11
9gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome... 46 0.14
10gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell P... 46 0.14
11dbj|AP001007.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 46 0.14
12dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 46 0.14
13emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chr... 46 0.14
14gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, compl... 46 0.14
15gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 46 0.14
16emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chr... 46 0.14
17emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chr... 46 0.14
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
19emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 44 0.54
20gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complet... 44 0.54
21gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complet... 44 0.54
22gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 44 0.54
23ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (C... 42 2.1
24gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosom... 42 2.1
25gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete s... 42 2.1
26emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J... 42 2.1
27emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 42 2.1
28gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete seq... 42 2.1
29ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrie... 42 2.1
30gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2... 42 2.1
31emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on ch... 42 2.1
32gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, comple... 42 2.1
33gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
34gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
35gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosom... 40 8.4
36gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 8.4
37ref|XM_750087.1| Aspergillus fumigatus Af293 pseudouridylate syn... 40 8.4
38emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, comple... 40 8.4
39gb|AC138016.14| Medicago truncatula clone mth2-34f15, complete s... 40 8.4
40gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 8.4
41gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Can... 40 8.4
42emb|CR376770.9| Zebrafish DNA sequence from clone DKEY-157L19 in... 40 8.4
43dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
44gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, com... 40 8.4
45ref|XM_235262.3| PREDICTED: Rattus norvegicus transmembrane 7 su... 40 8.4
46gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, co... 40 8.4
47emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in ... 40 8.4
48emb|AL163032.3|CNS01RI9 Human chromosome 14 DNA sequence BAC C-2... 40 8.4
49gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.29... 40 8.4
50gb|AC122515.5| Mus musculus BAC clone RP24-455N18 from 9, comple... 40 8.4
51emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chr... 40 8.4 
>ref|XM_463995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1046

 Score =  466 bits (235), Expect = e-128
 Identities = 439/507 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctcgccaactacgacaacctctttcctgcacttcgagaatttgtcggcacaggaaaaccc 61
           |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||  || 
Sbjct: 199 ctcgccaactaccacaacctgtttcctgcacttcgagaatttgttggtacaggaaggcct 258

                                                                       
Query: 62  gtgtggggaacctgtgctgggctcatcttccttgcaaacaaggcagtagggcagaaaaca 121
           || |||||||| |||||||| ||||||||||| || |||||||||||||| || ||| | 
Sbjct: 259 gtctggggaacttgtgctggactcatcttcctagctaacaaggcagtaggccaaaaatcc 318

                                                                       
Query: 122 ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggagt 181
           ||||| || |||||| |||| || |||||||||||||||||||| |||||||||||||| 
Sbjct: 319 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggagc 378

                                                                       
Query: 182 cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 241
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 438

                                                                       
Query: 242 agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 301
           ||  ||||||| |||||||||||||||||||||||||||||| | || |||||     ||
Sbjct: 439 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 498

                                                                       
Query: 302 gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 361
           ||||||||| |||| ||||| ||||||||  | |  |||||||| ||||||||| | |||
Sbjct: 499 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 558

                                                                       
Query: 362 ggcgagggtgtggaggaccaagtgtactccaaagatcgggtgattgttgcagtacgacaa 421
           || |||||||| |||||  |||||||||| ||||||||||| |||||||| ||| | |||
Sbjct: 559 ggagagggtgttgaggaagaagtgtactcgaaagatcgggtaattgttgctgtaaggcaa 618

                                                                       
Query: 422 gggaacatccttgccaccgcatttcacccagagctaacatcagactctagatggcatcaa 481
           ||||||||||| || || || |||||||||||  | ||||||||||||||||||||||  
Sbjct: 619 gggaacatcctcgctactgcttttcacccagaattgacatcagactctagatggcatcgg 678

                                      
Query: 482 ctcttcttggacatggacaaagaatct 508
            ||||| |||||||||| |||||||||
Sbjct: 679 ttcttcctggacatggataaagaatct 705



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 565 tgggtcgaagaataaggctcctgatctacccattttcgagtag 607
           |||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct: 762 tgggtcaaagaataagcctcttgatctacccatcttcgagtag 804
to top
>dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full
           insert sequence
          Length = 1047

 Score =  466 bits (235), Expect = e-128
 Identities = 439/507 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctcgccaactacgacaacctctttcctgcacttcgagaatttgtcggcacaggaaaaccc 61
           |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||  || 
Sbjct: 199 ctcgccaactaccacaacctgtttcctgcacttcgagaatttgttggtacaggaaggcct 258

                                                                       
Query: 62  gtgtggggaacctgtgctgggctcatcttccttgcaaacaaggcagtagggcagaaaaca 121
           || |||||||| |||||||| ||||||||||| || |||||||||||||| || ||| | 
Sbjct: 259 gtctggggaacttgtgctggactcatcttcctagctaacaaggcagtaggccaaaaatcc 318

                                                                       
Query: 122 ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggagt 181
           ||||| || |||||| |||| || |||||||||||||||||||| |||||||||||||| 
Sbjct: 319 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggagc 378

                                                                       
Query: 182 cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 241
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 438

                                                                       
Query: 242 agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 301
           ||  ||||||| |||||||||||||||||||||||||||||| | || |||||     ||
Sbjct: 439 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 498

                                                                       
Query: 302 gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 361
           ||||||||| |||| ||||| ||||||||  | |  |||||||| ||||||||| | |||
Sbjct: 499 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 558

                                                                       
Query: 362 ggcgagggtgtggaggaccaagtgtactccaaagatcgggtgattgttgcagtacgacaa 421
           || |||||||| |||||  |||||||||| ||||||||||| |||||||| ||| | |||
Sbjct: 559 ggagagggtgttgaggaagaagtgtactcgaaagatcgggtaattgttgctgtaaggcaa 618

                                                                       
Query: 422 gggaacatccttgccaccgcatttcacccagagctaacatcagactctagatggcatcaa 481
           ||||||||||| || || || |||||||||||  | ||||||||||||||||||||||  
Sbjct: 619 gggaacatcctcgctactgcttttcacccagaattgacatcagactctagatggcatcgg 678

                                      
Query: 482 ctcttcttggacatggacaaagaatct 508
            ||||| |||||||||| |||||||||
Sbjct: 679 ttcttcctggacatggataaagaatct 705



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 565 tgggtcgaagaataaggctcctgatctacccattttcgagtag 607
           |||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct: 762 tgggtcaaagaataagcctcttgatctacccatcttcgagtag 804
to top
>gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence
          Length = 794

 Score =  317 bits (160), Expect = 2e-83
 Identities = 352/416 (84%)
 Strand = Plus / Plus

                                                                       
Query: 104 gcagtagggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccac 163
           ||||||||||| |||||||| || || || |||||||| ||  |||||||||| ||||||
Sbjct: 11  gcagtagggcaaaaaacaggggggcaggaacttgttggaggattagattgtacagtccac 70

                                                                       
Query: 164 cgtaacttttttgggagtcagcttcaaagcttcgaaacagaactttcagtgccaatgctt 223
           || ||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||
Sbjct: 71  cgaaacttttttgggagtcagcttcaaagctttgagacagagctttccgtgccaaagctt 130

                                                                       
Query: 224 gcagagaaggaaggagggagtaatacatgtcgtggcgtatttatacgagcacctgctatc 283
            | |||||||||||||||| | ||||||| || || ||||   |||| ||||||||||| 
Sbjct: 131 tcggagaaggaaggagggaatgatacatgccgcggtgtatgggtacgggcacctgctata 190

                                                                       
Query: 284 ctagaagtaggccaggatgttgaagtattggccgattgccctgttcctgctggcagaccc 343
           || |||||||| |  ||||||||| ||||||| |||||||| |||||||||| |||||||
Sbjct: 191 ctggaagtaggtccagatgttgaaatattggcggattgccccgttcctgctgacagaccc 250

                                                                       
Query: 344 agcattacaataacatctggcgagggtgtggaggaccaagtgtactccaaagatcgggtg 403
           |||||||||||| ||| ||| ||||||   |||||  ||| ||| || ||||||||||| 
Sbjct: 251 agcattacaatatcatttggggagggtactgaggaagaagagtattcaaaagatcgggta 310

                                                                       
Query: 404 attgttgcagtacgacaagggaacatccttgccaccgcatttcacccagagctaacatca 463
           ||||||||||| || |||||||||||||| || || || || ||||||||  | ||||||
Sbjct: 311 attgttgcagtgcggcaagggaacatcctcgcaactgctttccacccagaattgacatca 370

                                                                   
Query: 464 gactctagatggcatcaactcttcttggacatggacaaagaatctcaagcaaaggc 519
           ||||| ||||||||||   |||||||||||||||| |||||||| | |||||||||
Sbjct: 371 gactccagatggcatcgtttcttcttggacatggataaagaatccccagcaaaggc 426
to top
>gb|AY109859.1| Zea mays CL21031_1 mRNA sequence
          Length = 848

 Score =  198 bits (100), Expect = 2e-47
 Identities = 220/260 (84%)
 Strand = Plus / Plus

                                                                       
Query: 260 gtatttatacgagcacctgctatcctagaagtaggccaggatgttgaagtattggccgat 319
           ||||||||||| |||||||||||  | |||||||| |  ||||||||| ||||||| |||
Sbjct: 221 gtatttatacgggcacctgctatattggaagtaggtccagatgttgaaatattggcggat 280

                                                                       
Query: 320 tgccctgttcctgctggcagacccagcattacaataacatctggcgagggtgtggaggac 379
           ||||||||||||| || ||||||||||||||||||| ||| ||| ||||||   ||||| 
Sbjct: 281 tgccctgttcctgttgacagacccagcattacaatatcatttggggagggtactgaggaa 340

                                                                       
Query: 380 caagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccacc 439
            ||| ||| || ||||||||||| ||||||||||| || |||||||||||||| || || 
Sbjct: 341 gaagagtattcaaaagatcgggtaattgttgcagtgcggcaagggaacatcctcgcaact 400

                                                                       
Query: 440 gcatttcacccagagctaacatcagactctagatggcatcaactcttcttggacatggac 499
           || || ||||||||  | ||||||||||| ||||||||||   |||||||||||||||| 
Sbjct: 401 gctttccacccagaattgacatcagactccagatggcatcgtttcttcttggacatggat 460

                               
Query: 500 aaagaatctcaagcaaaggc 519
           |||||||| | |||||||||
Sbjct: 461 aaagaatccccagcaaaggc 480



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 127/159 (79%)
 Strand = Plus / Plus

                                                                       
Query: 65  tggggaacctgtgctgggctcatcttccttgcaaacaaggcagtagggcagaaaacagga 124
           |||||||||||||||||||||||||| ||||||||||| ||||||||||      ||   
Sbjct: 26  tggggaacctgtgctgggctcatctttcttgcaaacaaagcagtagggcnnnnnncannn 85

                                                                       
Query: 125 ggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggagtcag 184
              || || |||||||| ||  |||||||||| |||||||| |||      |||||||||
Sbjct: 86  nnncaggaacttgttggaggattagattgtacagtccaccgaaacnnnnnngggagtcag 145

                                                  
Query: 185 cttcaaagcttcgaaacagaactttcagtgccaatgctt 223
           ||||||||||| || ||||| ||||| ||||||| ||||
Sbjct: 146 cttcaaagctttgagacagagctttccgtgccaaagctt 184
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  182 bits (92), Expect = 9e-43
 Identities = 170/196 (86%)
 Strand = Plus / Minus

                                                                           
Query: 182     cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 241
               |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1567689 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 1567630

                                                                           
Query: 242     agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 301
               ||  ||||||| |||||||||||||||||||||||||||||| | || |||||     ||
Sbjct: 1567629 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 1567570

                                                                           
Query: 302     gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 361
               ||||||||| |||| ||||| ||||||||  | |  |||||||| ||||||||| | |||
Sbjct: 1567569 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 1567510

                               
Query: 362     ggcgagggtgtggagg 377
               || |||||||| ||||
Sbjct: 1567509 ggagagggtgttgagg 1567494



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                           
Query: 23      tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 82
               ||||||||||||||||||||||| || |||||||  || || |||||||| |||||||| 
Sbjct: 1568026 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 1567967

                                            
Query: 83      ctcatcttccttgcaaacaaggcagtagg 111
               ||||||||||| || ||||||||||||||
Sbjct: 1567966 ctcatcttcctagctaacaaggcagtagg 1567938



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                           
Query: 381     aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 440
               |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || |
Sbjct: 1566712 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 1566653

                                                  
Query: 441     catttcacccagagctaacatcagactctagatgg 475
               | |||||||||||  | ||||||||||||||||||
Sbjct: 1566652 cttttcacccagaattgacatcagactctagatgg 1566618



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                          
Query: 122     ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 180
               ||||| || |||||| |||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 1567859 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 1567801



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 565     tgggtcgaagaataaggctcctgatctacccattttcgagtag 607
               |||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct: 1566438 tgggtcaaagaataagcctcttgatctacccatcttcgagtag 1566396
to top
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1007_D04
          Length = 125503

 Score =  182 bits (92), Expect = 9e-43
 Identities = 170/196 (86%)
 Strand = Plus / Minus

                                                                        
Query: 182  cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 241
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 4733

                                                                        
Query: 242  agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 301
            ||  ||||||| |||||||||||||||||||||||||||||| | || |||||     ||
Sbjct: 4732 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 4673

                                                                        
Query: 302  gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 361
            ||||||||| |||| ||||| ||||||||  | |  |||||||| ||||||||| | |||
Sbjct: 4672 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 4613

                            
Query: 362  ggcgagggtgtggagg 377
            || |||||||| ||||
Sbjct: 4612 ggagagggtgttgagg 4597



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                        
Query: 23   tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 82
            ||||||||||||||||||||||| || |||||||  || || |||||||| |||||||| 
Sbjct: 5129 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 5070

                                         
Query: 83   ctcatcttccttgcaaacaaggcagtagg 111
            ||||||||||| || ||||||||||||||
Sbjct: 5069 ctcatcttcctagctaacaaggcagtagg 5041



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 381  aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 440
            |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || |
Sbjct: 3815 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 3756

                                               
Query: 441  catttcacccagagctaacatcagactctagatgg 475
            | |||||||||||  | ||||||||||||||||||
Sbjct: 3755 cttttcacccagaattgacatcagactctagatgg 3721



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 122  ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 180
            ||||| || |||||| |||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 4962 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 4904



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 565  tgggtcgaagaataaggctcctgatctacccattttcgagtag 607
            |||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct: 3541 tgggtcaaagaataagcctcttgatctacccatcttcgagtag 3499
to top
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0576F08
          Length = 135314

 Score =  182 bits (92), Expect = 9e-43
 Identities = 170/196 (86%)
 Strand = Plus / Minus

                                                                          
Query: 182    cagcttcaaagcttcgaaacagaactttcagtgccaatgcttgcagagaaggaaggaggg 241
              |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 131110 cagcttcaaagctttgaaacggaactttcagtgccaatgcttgcagagaaggaaggaggg 131051

                                                                          
Query: 242    agtaatacatgtcgtggcgtatttatacgagcacctgctatcctagaagtaggccaggat 301
              ||  ||||||| |||||||||||||||||||||||||||||| | || |||||     ||
Sbjct: 131050 agcgatacatgccgtggcgtatttatacgagcacctgctatcttggatgtaggttcaaat 130991

                                                                          
Query: 302    gttgaagtattggccgattgccctgttcctgctggcagacccagcattacaataacatct 361
              ||||||||| |||| ||||| ||||||||  | |  |||||||| ||||||||| | |||
Sbjct: 130990 gttgaagtactggcggattgtcctgttccatcggatagacccagtattacaatagcgtct 130931

                              
Query: 362    ggcgagggtgtggagg 377
              || |||||||| ||||
Sbjct: 130930 ggagagggtgttgagg 130915



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                          
Query: 23     tttcctgcacttcgagaatttgtcggcacaggaaaacccgtgtggggaacctgtgctggg 82
              ||||||||||||||||||||||| || |||||||  || || |||||||| |||||||| 
Sbjct: 131447 tttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgctgga 131388

                                           
Query: 83     ctcatcttccttgcaaacaaggcagtagg 111
              ||||||||||| || ||||||||||||||
Sbjct: 131387 ctcatcttcctagctaacaaggcagtagg 131359



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                          
Query: 381    aagtgtactccaaagatcgggtgattgttgcagtacgacaagggaacatccttgccaccg 440
              |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| || || |
Sbjct: 130133 aagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctactg 130074

                                                 
Query: 441    catttcacccagagctaacatcagactctagatgg 475
              | |||||||||||  | ||||||||||||||||||
Sbjct: 130073 cttttcacccagaattgacatcagactctagatgg 130039



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 122    ggaggccaagagcttgttggtgggctagattgtactgtccaccgtaacttttttgggag 180
              ||||| || |||||| |||| || |||||||||||||||||||| ||||||||||||||
Sbjct: 131280 ggaggtcaggagcttattggaggactagattgtactgtccaccggaacttttttgggag 131222



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 565    tgggtcgaagaataaggctcctgatctacccattttcgagtag 607
              |||||| ||||||||| ||| |||||||||||| |||||||||
Sbjct: 129859 tgggtcaaagaataagcctcttgatctacccatcttcgagtag 129817
to top
>gb|AY532658.1| Nicotiana tabacum putative pyridoxine biosynthesis protein (Pdx2)
           mRNA, complete cds
          Length = 756

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 110 gggcagaaaacaggaggccaagagcttgttggtgggctagattgtactgtccaccgtaac 169
           ||||||||||| ||||| || || ||  |||| || || |||||||| |||||||| |||
Sbjct: 268 gggcagaaaactggaggacaggaactgattggaggcctcgattgtaccgtccaccgaaac 327

                                                  
Query: 170 ttttttgggagtcagcttcaaagcttcgaaacagaactt 208
           ||||||||||| ||| |||||||||| || |||||||||
Sbjct: 328 ttttttgggagccagattcaaagctttgagacagaactt 366
to top
>gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome 12, complete sequence
          Length = 192647

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 179151 cttgcagagaaggaaggagggag 179129
to top
>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 204394

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 167971 cttgcagagaaggaaggagggag 167993



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 136161 cttgcagagaaggaaggagggag 136139



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 221   cttgcagagaaggaaggagggag 243
             |||||||||||||||||||||||
Sbjct: 79471 cttgcagagaaggaaggagggag 79449
to top
>dbj|AP001007.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-687M24, complete
              sequence
          Length = 203840

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 73     ctgtgctgggctcatcttccttg 95
              |||||||||||||||||||||||
Sbjct: 164875 ctgtgctgggctcatcttccttg 164897
to top
>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete
             sequence
          Length = 176129

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 73    ctgtgctgggctcatcttccttg 95
             |||||||||||||||||||||||
Sbjct: 37014 ctgtgctgggctcatcttccttg 37036
to top
>emb|CT485612.7| Mouse DNA sequence from clone RP24-441F13 on chromosome 12, complete
             sequence
          Length = 116475

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 221   cttgcagagaaggaaggagggag 243
             |||||||||||||||||||||||
Sbjct: 86006 cttgcagagaaggaaggagggag 86028



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 221   cttgcagagaaggaaggagggag 243
             |||||||||||||||||||||||
Sbjct: 70202 cttgcagagaaggaaggagggag 70180
to top
>gb|AC126554.3| Mus musculus BAC clone RP23-465O13 from 12, complete sequence
          Length = 186243

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 185071 cttgcagagaaggaaggagggag 185049



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gcagagaaggaaggagggag 243
              ||||||||||||||||||||
Sbjct: 177391 gcagagaaggaaggagggag 177410
to top
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 221   cttgcagagaaggaaggagggag 243
             |||||||||||||||||||||||
Sbjct: 34485 cttgcagagaaggaaggagggag 34507



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   gcagagaaggaaggagggag 243
             ||||||||||||||||||||
Sbjct: 42165 gcagagaaggaaggagggag 42146
to top
>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete
              sequence
          Length = 156278

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 155924 cttgcagagaaggaaggagggag 155946



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 124114 cttgcagagaaggaaggagggag 124092
to top
>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete
              sequence
          Length = 179748

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 221    cttgcagagaaggaaggagggag 243
              |||||||||||||||||||||||
Sbjct: 174237 cttgcagagaaggaaggagggag 174259
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 230      aaggaaggagggagtaatacat 251
                ||||||||||||||||||||||
Sbjct: 19207911 aaggaaggagggagtaatacat 19207932
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 230    aaggaaggagggagtaatacat 251
              ||||||||||||||||||||||
Sbjct: 141433 aaggaaggagggagtaatacat 141454
to top
>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence
          Length = 218532

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 321    gccctgttcctgctggcagacc 342
              ||||||||||||||||||||||
Sbjct: 157056 gccctgttcctgctggcagacc 157035
to top
>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence
          Length = 229988

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 321   gccctgttcctgctggcagacc 342
             ||||||||||||||||||||||
Sbjct: 94926 gccctgttcctgctggcagacc 94947
to top
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 321   gccctgttcctgctggcagacc 342
             ||||||||||||||||||||||
Sbjct: 91289 gccctgttcctgctggcagacc 91268
to top
>ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (CAGL0I02574g) partial
           mRNA
          Length = 1206

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 492 acatggacaaagaatctcaagcaaaggcc 520
           ||||||||||||||||| ||| |||||||
Sbjct: 428 acatggacaaagaatctgaagaaaaggcc 456
to top
>gb|AC104095.4| Mus musculus BAC clone RP23-403G12 from chromosome 19, complete
             sequence
          Length = 187859

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   agagaaggaaggagggagtaa 246
             |||||||||||||||||||||
Sbjct: 64486 agagaaggaaggagggagtaa 64506
to top
>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence
          Length = 116179

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   atgcttgcagagaaggaagga 238
             |||||||||||||||||||||
Sbjct: 91640 atgcttgcagagaaggaagga 91620
to top
>emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J19 on chromosome 20 Contains the 3'
              end of the GNAS complex locus, the CTSZ gene for cathepsin
              Z, the ATP5E gene for ATP synthase (H+ transporting,
              mitochondrial F1 complex, epsilon subunit), the TH1L gene
              for TH1-like (Drosophila), the gene for tubulin beta 1
              class VI (TUBB1), the C20orf45 gene encoding the CGI-107
              protein (LOC51012) and four CpG islands, complete sequence
          Length = 142094

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    ttgcagagaaggaaggaggga 242
              |||||||||||||||||||||
Sbjct: 105169 ttgcagagaaggaaggaggga 105189
to top
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 492    acatggacaaagaatctcaagcaaaggcc 520
              ||||||||||||||||| ||| |||||||
Sbjct: 232820 acatggacaaagaatctgaagaaaaggcc 232848
to top
>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence
          Length = 127568

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   atgcttgcagagaaggaagga 238
             |||||||||||||||||||||
Sbjct: 92495 atgcttgcagagaaggaagga 92515
to top
>ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrier family 22, member 16
            (LOC557279), mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 295  ccaggatgttgaagtattggc 315
            |||||||||||||||||||||
Sbjct: 1311 ccaggatgttgaagtattggc 1331
to top
>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence
          Length = 230827

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    ttgcagagaaggaaggaggga 242
              |||||||||||||||||||||
Sbjct: 102330 ttgcagagaaggaaggaggga 102350
to top
>emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on chromosome 12, complete
              sequence
          Length = 219570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    cagagaaggaaggagggagta 245
              |||||||||||||||||||||
Sbjct: 130905 cagagaaggaaggagggagta 130925
to top
>gb|AC151575.1| Mus musculus BAC clone RP24-126E1 from 19, complete sequence
          Length = 200563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   agagaaggaaggagggagtaa 246
             |||||||||||||||||||||
Sbjct: 25843 agagaaggaaggagggagtaa 25823
to top
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12,
             complete sequence
          Length = 102029

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   caatgcttgcagagaaggaa 235
             ||||||||||||||||||||
Sbjct: 17143 caatgcttgcagagaaggaa 17124
to top
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
              complete sequence
          Length = 117724

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    caatgcttgcagagaaggaa 235
              ||||||||||||||||||||
Sbjct: 115221 caatgcttgcagagaaggaa 115202
to top
>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence
          Length = 142071

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   agggcagaaaacaggaggccaaga 132
             |||||||||||||||| |||||||
Sbjct: 19051 agggcagaaaacaggaagccaaga 19028
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    cctgttcctgctggcagacc 342
              ||||||||||||||||||||
Sbjct: 355162 cctgttcctgctggcagacc 355181
to top
>ref|XM_750087.1| Aspergillus fumigatus Af293 pseudouridylate synthase (Afu2g08460)
           partial mRNA
          Length = 1734

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 gcttgcagagaaggaaggag 239
           ||||||||||||||||||||
Sbjct: 654 gcttgcagagaaggaaggag 673
to top
>emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, complete sequence
          Length = 33266

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 554   aatgcagaagttgggtcgaagaat 577
             |||||||||||||||| |||||||
Sbjct: 27971 aatgcagaagttgggtagaagaat 27948
to top
>gb|AC138016.14| Medicago truncatula clone mth2-34f15, complete sequence
          Length = 116164

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 128   caagagcttgttggtgggctagattgtactgt 159
             ||||| ||||||||||| || |||||||||||
Sbjct: 23795 caagaacttgttggtggacttgattgtactgt 23826
to top
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 323     cctgttcctgctggcagacc 342
               ||||||||||||||||||||
Sbjct: 1923093 cctgttcctgctggcagacc 1923112
to top
>gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 145390

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      caactacgacaacctctttcctgc 30
              ||||||||| ||||||||||||||
Sbjct: 113509 caactacgataacctctttcctgc 113532
to top
>emb|CR376770.9| Zebrafish DNA sequence from clone DKEY-157L19 in linkage group 13,
            complete sequence
          Length = 49495

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 543  catcttcaaacaatgcagaa 562
            ||||||||||||||||||||
Sbjct: 5478 catcttcaaacaatgcagaa 5497
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      caatgcttgcagagaaggaa 235
                ||||||||||||||||||||
Sbjct: 14386435 caatgcttgcagagaaggaa 14386416
to top
>gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, complete sequence
          Length = 235968

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    gacaagggaacatccttgcc 436
              ||||||||||||||||||||
Sbjct: 153915 gacaagggaacatccttgcc 153934
to top
>ref|XM_235262.3| PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 4
           (predicted) (Tm7sf4_predicted), mRNA
          Length = 1445

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 tttgggagtcagcttcaaag 192
           ||||||||||||||||||||
Sbjct: 896 tttgggagtcagcttcaaag 877
to top
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence
          Length = 206482

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   agggcagaaaacaggaggccaaga 132
             |||||||||||||||| |||||||
Sbjct: 96440 agggcagaaaacaggaagccaaga 96463
to top
>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20,
              complete sequence
          Length = 116609

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    caggatgttgaagtattggc 315
              ||||||||||||||||||||
Sbjct: 113786 caggatgttgaagtattggc 113767
to top
>emb|AL163032.3|CNS01RI9 Human chromosome 14 DNA sequence BAC C-2303B20 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 130313

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gcagagaaggaaggagggag 243
              ||||||||||||||||||||
Sbjct: 108391 gcagagaaggaaggagggag 108410
to top
>gb|AC005988.1|AC005988 Homo sapiens chromosome 17, clone hRPK.299_G_24, complete sequence
          Length = 173126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   cttgcagagaaggaaggagg 240
             ||||||||||||||||||||
Sbjct: 96153 cttgcagagaaggaaggagg 96134
to top
>gb|AC122515.5| Mus musculus BAC clone RP24-455N18 from 9, complete sequence
          Length = 164271

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    agggcagaaaacaggaggccaaga 132
              |||||||||||||||| |||||||
Sbjct: 131651 agggcagaaaacaggaagccaaga 131628
to top
>emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chromosome 2, complete
             sequence
          Length = 215428

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 417   gacaagggaacatccttgccaccgcatt 444
             |||||||||| |||||||||||| ||||
Sbjct: 41909 gacaagggaaaatccttgccacctcatt 41936


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,274,236
Number of Sequences: 3902068
Number of extensions: 5274236
Number of successful extensions: 124525
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124204
Number of HSP's gapped (non-prelim): 319
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top