>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 272 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 93
           ASL  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295

Query: 92  FI 87
            I
Sbjct: 296 SI 297

>ZN580_MOUSE (Q9DB38) Zinc finger protein 580|
          Length = 172

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 343 IQCPENPRFPPQGSSTEGESGPK 411
           +Q  E PR PPQ  +T GE GP+
Sbjct: 67  VQLEEEPRGPPQREATPGEPGPR 89

>CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA|
          Length = 320

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 31/97 (31%), Positives = 39/97 (40%)
 Frame = -3

Query: 332 VFVTQADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYA 153
           +F+T   ILA  S +    V  +  GTL YR    S S G+ +    L   G        
Sbjct: 2   IFITLEHILAHISFSLILVVTLIYWGTLVYRIEGLSSSGGKGMIVTFLCTTG-------L 54

Query: 152 LFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*SGLF 42
           L   WL  G        P S + E SF  LSW S +F
Sbjct: 55  LINRWLYSGH------LPLSNLYE-SFMFLSWSSSVF 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,656,647
Number of Sequences: 219361
Number of extensions: 1729192
Number of successful extensions: 4257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4257
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)