ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRG8_CAEEL (P46565) Serpentine receptor class gamma-8 (Protein s... 28 8.5
2SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Tra... 28 8.5

>SRG8_CAEEL (P46565) Serpentine receptor class gamma-8 (Protein srg-8)|
          Length = 316

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -2

Query: 209 LWGV*HGSFF---FSRYIILNLFSPF 141
           LW V H  F+   FSR +ILNL +PF
Sbjct: 134 LWPVDHEKFWKINFSRILILNLIAPF 159



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>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional|
            corepressor Sin3b) (Histone deacetylase complex subunit
            Sin3b)
          Length = 1162

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 109  TTYPYR*XQC*KGENRFKIMYLEKKKEPCQT 201
            T+Y ++  +C   EN FK+M+L++K +   T
Sbjct: 937  TSYQWKAERCMADENCFKVMFLQRKGQVIMT 967


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,366,915
Number of Sequences: 219361
Number of extensions: 347912
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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