Clone Name | basd2o16 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Minus Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 11879489 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11879430 Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524 |||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 11879429 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 11879370 Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584 ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 11879369 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 11879310 Query: 585 cgagttctctactcctgcag 604 |||||||||||| ||||||| Sbjct: 11879309 cgagttctctacacctgcag 11879290 Score = 198 bits (100), Expect = 1e-47 Identities = 195/226 (86%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 11879710 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11879651 Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294 || ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 11879650 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11879591 Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 11879590 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11879531 Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 11879530 aggaatccatctgatggattgccacacaggattcatgatgctccac 11879485
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Minus Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 11876252 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11876193 Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524 |||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 11876192 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 11876133 Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584 ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 11876132 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 11876073 Query: 585 cgagttctctactcctgcag 604 |||||||||||| ||||||| Sbjct: 11876072 cgagttctctacacctgcag 11876053 Score = 198 bits (100), Expect = 1e-47 Identities = 195/226 (86%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 11876473 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11876414 Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294 || ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 11876413 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11876354 Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 11876353 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11876294 Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 11876293 aggaatccatctgatggattgccacacaggattcatgatgctccac 11876248
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Plus Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 31164 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 31223 Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524 |||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 31224 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 31283 Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584 ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 31284 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 31343 Query: 585 cgagttctctactcctgcag 604 |||||||||||| ||||||| Sbjct: 31344 cgagttctctacacctgcag 31363 Score = 198 bits (100), Expect = 1e-47 Identities = 195/226 (86%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 30943 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 31002 Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294 || ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 31003 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 31062 Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 31063 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 31122 Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 31123 aggaatccatctgatggattgccacacaggattcatgatgctccac 31168
>dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115O15, full insert sequence Length = 3802 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Plus Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 444 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 503 Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524 |||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 504 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 563 Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584 ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 564 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 623 Query: 585 cgagttctctactcctgcag 604 |||||||||||| ||||||| Sbjct: 624 cgagttctctacacctgcag 643 Score = 198 bits (100), Expect = 1e-47 Identities = 195/226 (86%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 223 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 282 Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294 || ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 283 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 342 Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 343 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 402 Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 403 aggaatccatctgatggattgccacacaggattcatgatgctccac 448
>dbj|AK066058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C14, full insert sequence Length = 1988 Score = 254 bits (128), Expect = 3e-64 Identities = 182/200 (91%) Strand = Plus / Plus Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 449 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 508 Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524 |||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct: 509 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 568 Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584 ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 569 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 628 Query: 585 cgagttctctactcctgcag 604 |||||||||||| ||||||| Sbjct: 629 cgagttctctacacctgcag 648 Score = 198 bits (100), Expect = 1e-47 Identities = 195/226 (86%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 228 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 287 Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294 || ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 288 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 347 Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 348 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 407 Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 408 aggaatccatctgatggattgccacacaggattcatgatgctccac 453
>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence Length = 169439 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 145 taagctttatttgtcaaacaaaaata 170 |||| ||||||||||||||||||||| Sbjct: 164341 taagttttatttgtcaaacaaaaata 164316
>gb|AC109640.3| Homo sapiens BAC clone RP11-717B15 from 4, complete sequence Length = 100678 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 gagcactttcttattttggtag 524 |||||||||||||||||||||| Sbjct: 546 gagcactttcttattttggtag 567
>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence Length = 166595 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 162 acaaaaataagctagtagtatttgct 187 ||||||||||| |||||||||||||| Sbjct: 32449 acaaaaataaggtagtagtatttgct 32424
>gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complete sequence Length = 198586 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 gagcactttcttattttggtag 524 |||||||||||||||||||||| Sbjct: 197132 gagcactttcttattttggtag 197153
>gb|AC009704.8| Homo sapiens chromosome 18, clone RP11-231E4, complete sequence Length = 178691 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 145 taagctttatttgtcaaacaaaaata 170 |||| ||||||||||||||||||||| Sbjct: 9620 taagttttatttgtcaaacaaaaata 9595
>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 262797 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 494 tatctgatggagcactttctta 515 |||||||||||||||||||||| Sbjct: 245698 tatctgatggagcactttctta 245677
>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete sequence Length = 208105 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 gcagtgaccagtacctgaatc 481 ||||||||||||||||||||| Sbjct: 69584 gcagtgaccagtacctgaatc 69564
>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete sequence Length = 184857 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 gcagtgaccagtacctgaatc 481 ||||||||||||||||||||| Sbjct: 66944 gcagtgaccagtacctgaatc 66964
>gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, complete sequence Length = 62268 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 467 accagtacctgaatcaccaccattc 491 ||||||||||||| ||||||||||| Sbjct: 6325 accagtacctgaaacaccaccattc 6349
>emb|X61064.1|ALTRNALYS Acholeplasma laidlawii tRNA-Lys gene Length = 280 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 ttatttgtcaaacaaaaataa 171 ||||||||||||||||||||| Sbjct: 24 ttatttgtcaaacaaaaataa 4
>gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence Length = 161264 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 aagtgcatttggcagtgacca 470 ||||||||||||||||||||| Sbjct: 87010 aagtgcatttggcagtgacca 87030
>gb|AY579881.1| Medicago truncatula AML1 mRNA, complete cds Length = 3456 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 attttggtagtcctgttgac 534 |||||||||||||||||||| Sbjct: 1493 attttggtagtcctgttgac 1512
>gb|AY769969.1| Bombyx mori casein kinase I alpha mRNA, complete cds Length = 1893 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gcgcagccgccgccgaccggcgct 51 ||||||||||||||||||| |||| Sbjct: 1079 gcgcagccgccgccgaccgacgct 1102
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 atttgctcgtgattgggcaa 200 |||||||||||||||||||| Sbjct: 2050322 atttgctcgtgattgggcaa 2050341
>emb|AJ973436.1| Toxoptera citricida partial mRNA for hypothetical protein (ORF3), clone tcitEST3 Length = 402 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgctctttgctgcgtggccg 235 |||||||||||||||||||| Sbjct: 2 cgctctttgctgcgtggccg 21
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aaataagctagtagtatttg 185 |||||||||||||||||||| Sbjct: 76668 aaataagctagtagtatttg 76649
>gb|AY177731.1| Rhizobium leguminosarum bv. viciae RepC (repC) gene, partial cds; RepB (repB), RepA (repA), TraI (traI), TrbB (trbB), TrbC (trbC), and TrbD (trbD) genes, complete cds; and TrbE (trbE) gene, partial cds Length = 6981 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cgaccggcgcttcgatcggg 60 |||||||||||||||||||| Sbjct: 5376 cgaccggcgcttcgatcggg 5395
>emb|AL159164.14| Human DNA sequence from clone RP1-104D1 on chromosome 6 Contains the 5' end of the BACH2 gene for BTB and CNC homology 1 basic leucine zipper transcription factor 2 and a CpG island, complete sequence Length = 62464 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 atgtgtcatcactatcatct 432 |||||||||||||||||||| Sbjct: 16392 atgtgtcatcactatcatct 16373
>gb|AC126777.2| Homo sapiens chromosome 5 clone RP11-929P16, complete sequence Length = 88927 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 taagctttatttgtcaaacaaaaataag 172 |||| ||||||||||| ||||||||||| Sbjct: 58647 taagttttatttgtcatacaaaaataag 58674
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence Length = 316613 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 caagcgtcgccgcgcagccg 36 |||||||||||||||||||| Sbjct: 225606 caagcgtcgccgcgcagccg 225587
>gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, complete sequence Length = 152005 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tgatggagcactttcttatt 517 |||||||||||||||||||| Sbjct: 131648 tgatggagcactttcttatt 131667
>gb|AC099514.2| Homo sapiens chromosome 5 clone RP11-454E7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 taagctttatttgtcaaacaaaaataag 172 |||| ||||||||||| ||||||||||| Sbjct: 56399 taagttttatttgtcatacaaaaataag 56426
>gb|AC087457.5| Homo sapiens chromosome 15, clone RP11-814P5, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tgatggagcactttcttatt 517 |||||||||||||||||||| Sbjct: 17018 tgatggagcactttcttatt 17037
>gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, complete sequence Length = 98232 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tgatggagcactttcttatt 517 |||||||||||||||||||| Sbjct: 77886 tgatggagcactttcttatt 77905
>gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 of the complete genome Length = 10746 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Minus Query: 24 cgccgcgcagccgccgccgaccggcgcttcg 54 |||||||||| ||||||||||||||||||| Sbjct: 2446 cgccgcgcag--gccgccgaccggcgcttcg 2418
>emb|BX248322.3| Zebrafish DNA sequence from clone CH211-219O4 in linkage group 13, complete sequence Length = 109740 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 gccttcaggctccacgctgg 555 |||||||||||||||||||| Sbjct: 105228 gccttcaggctccacgctgg 105209
>gb|DQ331111.1| Synthetic construct Saccharomyces cerevisiae clone FLH144711.01X YCR061W gene, complete sequence Length = 1896 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 caagcgtcgccgcgcagccg 36 |||||||||||||||||||| Sbjct: 52 caagcgtcgccgcgcagccg 33
>emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chromosome 4, complete sequence Length = 97114 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 tcctgctagcagagactgttccat 284 |||||||| ||||||||||||||| Sbjct: 35804 tcctgctaacagagactgttccat 35781 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,248,275 Number of Sequences: 3902068 Number of extensions: 5248275 Number of successful extensions: 98000 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 97773 Number of HSP's gapped (non-prelim): 223 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)