ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2o16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 254 3e-64
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
3gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 254 3e-64
4dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
5dbj|AK066058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
6gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, co... 44 0.53
7gb|AC109640.3| Homo sapiens BAC clone RP11-717B15 from 4, comple... 44 0.53
8gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, comple... 44 0.53
9gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complet... 44 0.53
10gb|AC009704.8| Homo sapiens chromosome 18, clone RP11-231E4, com... 44 0.53
11emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 44 0.53
12gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosom... 42 2.1
13gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosom... 42 2.1
14gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, compl... 42 2.1
15emb|X61064.1|ALTRNALYS Acholeplasma laidlawii tRNA-Lys gene 42 2.1
16gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, c... 42 2.1
17gb|AY579881.1| Medicago truncatula AML1 mRNA, complete cds 40 8.2
18gb|AY769969.1| Bombyx mori casein kinase I alpha mRNA, complete cds 40 8.2
19gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 40 8.2
20emb|AJ973436.1| Toxoptera citricida partial mRNA for hypothetica... 40 8.2
21gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 40 8.2
22gb|AY177731.1| Rhizobium leguminosarum bv. viciae RepC (repC) ge... 40 8.2
23emb|AL159164.14| Human DNA sequence from clone RP1-104D1 on chro... 40 8.2
24gb|AC126777.2| Homo sapiens chromosome 5 clone RP11-929P16, comp... 40 8.2
25emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA s... 40 8.2
26gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, com... 40 8.2
27gb|AC099514.2| Homo sapiens chromosome 5 clone RP11-454E7, compl... 40 8.2
28gb|AC087457.5| Homo sapiens chromosome 15, clone RP11-814P5, com... 40 8.2
29gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, com... 40 8.2
30gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 o... 40 8.2
31emb|BX248322.3| Zebrafish DNA sequence from clone CH211-219O4 in... 40 8.2
32gb|DQ331111.1| Synthetic construct Saccharomyces cerevisiae clon... 40 8.2
33emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chr... 40 8.2

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  254 bits (128), Expect = 3e-64
 Identities = 182/200 (91%)
 Strand = Plus / Minus

                                                                            
Query: 405      tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464
                |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 11879489 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11879430

                                                                            
Query: 465      tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524
                |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 11879429 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 11879370

                                                                            
Query: 525      tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584
                ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 11879369 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 11879310

                                    
Query: 585      cgagttctctactcctgcag 604
                |||||||||||| |||||||
Sbjct: 11879309 cgagttctctacacctgcag 11879290



 Score =  198 bits (100), Expect = 1e-47
 Identities = 195/226 (86%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                            
Query: 175      agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234
                ||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 11879710 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11879651

                                                                            
Query: 235      gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294
                || ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||  
Sbjct: 11879650 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11879591

                                                                            
Query: 295      gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351
                || ||| | |||||||||||||| ||||||||||||||   |||  || |||||||||||
Sbjct: 11879590 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11879531

                                                              
Query: 352      atgtactcatcagacggattgcctcataggactcctgatgctccac 397
                | | |  |||| || |||||||| || |||| || |||||||||||
Sbjct: 11879530 aggaatccatctgatggattgccacacaggattcatgatgctccac 11879485



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  254 bits (128), Expect = 3e-64
 Identities = 182/200 (91%)
 Strand = Plus / Minus

                                                                            
Query: 405      tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464
                |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 11876252 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11876193

                                                                            
Query: 465      tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524
                |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 11876192 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 11876133

                                                                            
Query: 525      tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584
                ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 11876132 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 11876073

                                    
Query: 585      cgagttctctactcctgcag 604
                |||||||||||| |||||||
Sbjct: 11876072 cgagttctctacacctgcag 11876053



 Score =  198 bits (100), Expect = 1e-47
 Identities = 195/226 (86%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                            
Query: 175      agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234
                ||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 11876473 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11876414

                                                                            
Query: 235      gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294
                || ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||  
Sbjct: 11876413 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11876354

                                                                            
Query: 295      gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351
                || ||| | |||||||||||||| ||||||||||||||   |||  || |||||||||||
Sbjct: 11876353 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11876294

                                                              
Query: 352      atgtactcatcagacggattgcctcataggactcctgatgctccac 397
                | | |  |||| || |||||||| || |||| || |||||||||||
Sbjct: 11876293 aggaatccatctgatggattgccacacaggattcatgatgctccac 11876248



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>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score =  254 bits (128), Expect = 3e-64
 Identities = 182/200 (91%)
 Strand = Plus / Plus

                                                                         
Query: 405   tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464
             |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 31164 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 31223

                                                                         
Query: 465   tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524
             |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 31224 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 31283

                                                                         
Query: 525   tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584
             ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 31284 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 31343

                                 
Query: 585   cgagttctctactcctgcag 604
             |||||||||||| |||||||
Sbjct: 31344 cgagttctctacacctgcag 31363



 Score =  198 bits (100), Expect = 1e-47
 Identities = 195/226 (86%), Gaps = 3/226 (1%)
 Strand = Plus / Plus

                                                                         
Query: 175   agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234
             ||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 30943 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 31002

                                                                         
Query: 235   gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294
             || ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||  
Sbjct: 31003 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 31062

                                                                         
Query: 295   gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351
             || ||| | |||||||||||||| ||||||||||||||   |||  || |||||||||||
Sbjct: 31063 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 31122

                                                           
Query: 352   atgtactcatcagacggattgcctcataggactcctgatgctccac 397
             | | |  |||| || |||||||| || |||| || |||||||||||
Sbjct: 31123 aggaatccatctgatggattgccacacaggattcatgatgctccac 31168



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>dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115O15, full
           insert sequence
          Length = 3802

 Score =  254 bits (128), Expect = 3e-64
 Identities = 182/200 (91%)
 Strand = Plus / Plus

                                                                       
Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464
           |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 503

                                                                       
Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524
           |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 504 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 563

                                                                       
Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584
           ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 564 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 623

                               
Query: 585 cgagttctctactcctgcag 604
           |||||||||||| |||||||
Sbjct: 624 cgagttctctacacctgcag 643



 Score =  198 bits (100), Expect = 1e-47
 Identities = 195/226 (86%), Gaps = 3/226 (1%)
 Strand = Plus / Plus

                                                                       
Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234
           ||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 223 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 282

                                                                       
Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294
           || ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||  
Sbjct: 283 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 342

                                                                       
Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351
           || ||| | |||||||||||||| ||||||||||||||   |||  || |||||||||||
Sbjct: 343 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 402

                                                         
Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397
           | | |  |||| || |||||||| || |||| || |||||||||||
Sbjct: 403 aggaatccatctgatggattgccacacaggattcatgatgctccac 448



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>dbj|AK066058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C14, full
           insert sequence
          Length = 1988

 Score =  254 bits (128), Expect = 3e-64
 Identities = 182/200 (91%)
 Strand = Plus / Plus

                                                                       
Query: 405 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 464
           |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 449 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 508

                                                                       
Query: 465 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttggtag 524
           |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 509 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttggtag 568

                                                                       
Query: 525 tcctgttgacagccttcaggctccacgctggacaccctctctgcaaagatttgatcttgg 584
           ||| | ||| || || ||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct: 569 tccagctgatagtctccaggctccacgatggacgccctctcttcaaagatttgatctcgg 628

                               
Query: 585 cgagttctctactcctgcag 604
           |||||||||||| |||||||
Sbjct: 629 cgagttctctacacctgcag 648



 Score =  198 bits (100), Expect = 1e-47
 Identities = 195/226 (86%), Gaps = 3/226 (1%)
 Strand = Plus / Plus

                                                                       
Query: 175 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 234
           ||||||| |||| |||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 228 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 287

                                                                       
Query: 235 gctaggccacatgggacaaagtctaatcctgctagcagagactgttccatggatcctaca 294
           || ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||  
Sbjct: 288 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 347

                                                                       
Query: 295 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 351
           || ||| | |||||||||||||| ||||||||||||||   |||  || |||||||||||
Sbjct: 348 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 407

                                                         
Query: 352 atgtactcatcagacggattgcctcataggactcctgatgctccac 397
           | | |  |||| || |||||||| || |||| || |||||||||||
Sbjct: 408 aggaatccatctgatggattgccacacaggattcatgatgctccac 453



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>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence
          Length = 169439

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 145    taagctttatttgtcaaacaaaaata 170
              |||| |||||||||||||||||||||
Sbjct: 164341 taagttttatttgtcaaacaaaaata 164316



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>gb|AC109640.3| Homo sapiens BAC clone RP11-717B15 from 4, complete sequence
          Length = 100678

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 503 gagcactttcttattttggtag 524
           ||||||||||||||||||||||
Sbjct: 546 gagcactttcttattttggtag 567



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>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence
          Length = 166595

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 162   acaaaaataagctagtagtatttgct 187
             ||||||||||| ||||||||||||||
Sbjct: 32449 acaaaaataaggtagtagtatttgct 32424



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>gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complete sequence
          Length = 198586

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 503    gagcactttcttattttggtag 524
              ||||||||||||||||||||||
Sbjct: 197132 gagcactttcttattttggtag 197153



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>gb|AC009704.8| Homo sapiens chromosome 18, clone RP11-231E4, complete sequence
          Length = 178691

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 145  taagctttatttgtcaaacaaaaata 170
            |||| |||||||||||||||||||||
Sbjct: 9620 taagttttatttgtcaaacaaaaata 9595



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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 494    tatctgatggagcactttctta 515
              ||||||||||||||||||||||
Sbjct: 245698 tatctgatggagcactttctta 245677



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>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete
             sequence
          Length = 208105

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 461   gcagtgaccagtacctgaatc 481
             |||||||||||||||||||||
Sbjct: 69584 gcagtgaccagtacctgaatc 69564



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>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete
             sequence
          Length = 184857

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   gcagtgaccagtacctgaatc 481
             |||||||||||||||||||||
Sbjct: 66944 gcagtgaccagtacctgaatc 66964



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>gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, complete sequence
          Length = 62268

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 467  accagtacctgaatcaccaccattc 491
            ||||||||||||| |||||||||||
Sbjct: 6325 accagtacctgaaacaccaccattc 6349



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>emb|X61064.1|ALTRNALYS Acholeplasma laidlawii tRNA-Lys gene
          Length = 280

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 151 ttatttgtcaaacaaaaataa 171
           |||||||||||||||||||||
Sbjct: 24  ttatttgtcaaacaaaaataa 4



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>gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence
          Length = 161264

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 450   aagtgcatttggcagtgacca 470
             |||||||||||||||||||||
Sbjct: 87010 aagtgcatttggcagtgacca 87030



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>gb|AY579881.1| Medicago truncatula AML1 mRNA, complete cds
          Length = 3456

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 515  attttggtagtcctgttgac 534
            ||||||||||||||||||||
Sbjct: 1493 attttggtagtcctgttgac 1512



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>gb|AY769969.1| Bombyx mori casein kinase I alpha mRNA, complete cds
          Length = 1893

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   gcgcagccgccgccgaccggcgct 51
            ||||||||||||||||||| ||||
Sbjct: 1079 gcgcagccgccgccgaccgacgct 1102



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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     atttgctcgtgattgggcaa 200
               ||||||||||||||||||||
Sbjct: 2050322 atttgctcgtgattgggcaa 2050341



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>emb|AJ973436.1| Toxoptera citricida partial mRNA for hypothetical protein (ORF3),
           clone tcitEST3
          Length = 402

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 cgctctttgctgcgtggccg 235
           ||||||||||||||||||||
Sbjct: 2   cgctctttgctgcgtggccg 21



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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   aaataagctagtagtatttg 185
             ||||||||||||||||||||
Sbjct: 76668 aaataagctagtagtatttg 76649



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>gb|AY177731.1| Rhizobium leguminosarum bv. viciae RepC (repC) gene, partial cds;
            RepB (repB), RepA (repA), TraI (traI), TrbB (trbB), TrbC
            (trbC), and TrbD (trbD) genes, complete cds; and TrbE
            (trbE) gene, partial cds
          Length = 6981

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   cgaccggcgcttcgatcggg 60
            ||||||||||||||||||||
Sbjct: 5376 cgaccggcgcttcgatcggg 5395



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>emb|AL159164.14| Human DNA sequence from clone RP1-104D1 on chromosome 6 Contains the 5'
             end of the BACH2 gene for BTB and CNC homology 1 basic
             leucine zipper transcription factor 2 and a CpG island,
             complete sequence
          Length = 62464

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   atgtgtcatcactatcatct 432
             ||||||||||||||||||||
Sbjct: 16392 atgtgtcatcactatcatct 16373



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>gb|AC126777.2| Homo sapiens chromosome 5 clone RP11-929P16, complete sequence
          Length = 88927

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 145   taagctttatttgtcaaacaaaaataag 172
             |||| ||||||||||| |||||||||||
Sbjct: 58647 taagttttatttgtcatacaaaaataag 58674



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>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence
          Length = 316613

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     caagcgtcgccgcgcagccg 36
              ||||||||||||||||||||
Sbjct: 225606 caagcgtcgccgcgcagccg 225587



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>gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, complete sequence
          Length = 152005

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    tgatggagcactttcttatt 517
              ||||||||||||||||||||
Sbjct: 131648 tgatggagcactttcttatt 131667



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>gb|AC099514.2| Homo sapiens chromosome 5 clone RP11-454E7, complete sequence
          Length = 181674

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 145   taagctttatttgtcaaacaaaaataag 172
             |||| ||||||||||| |||||||||||
Sbjct: 56399 taagttttatttgtcatacaaaaataag 56426



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>gb|AC087457.5| Homo sapiens chromosome 15, clone RP11-814P5, complete sequence
          Length = 141899

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   tgatggagcactttcttatt 517
             ||||||||||||||||||||
Sbjct: 17018 tgatggagcactttcttatt 17037



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>gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, complete sequence
          Length = 98232

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   tgatggagcactttcttatt 517
             ||||||||||||||||||||
Sbjct: 77886 tgatggagcactttcttatt 77905



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>gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 of the complete
            genome
          Length = 10746

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                           
Query: 24   cgccgcgcagccgccgccgaccggcgcttcg 54
            ||||||||||  |||||||||||||||||||
Sbjct: 2446 cgccgcgcag--gccgccgaccggcgcttcg 2418



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>emb|BX248322.3| Zebrafish DNA sequence from clone CH211-219O4 in linkage group 13,
              complete sequence
          Length = 109740

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    gccttcaggctccacgctgg 555
              ||||||||||||||||||||
Sbjct: 105228 gccttcaggctccacgctgg 105209



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>gb|DQ331111.1| Synthetic construct Saccharomyces cerevisiae clone FLH144711.01X
          YCR061W gene, complete sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 17 caagcgtcgccgcgcagccg 36
          ||||||||||||||||||||
Sbjct: 52 caagcgtcgccgcgcagccg 33



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>emb|AL669977.8| Mouse DNA sequence from clone RP23-197M19 on chromosome 4, complete
             sequence
          Length = 97114

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   tcctgctagcagagactgttccat 284
             |||||||| |||||||||||||||
Sbjct: 35804 tcctgctaacagagactgttccat 35781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,248,275
Number of Sequences: 3902068
Number of extensions: 5248275
Number of successful extensions: 98000
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97773
Number of HSP's gapped (non-prelim): 223
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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