>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -2

Query: 502 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 326
           +SP H     R++ T         + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 3   DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -2

Query: 430 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 326
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 553 FATAPGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQH 428
           F T P   RS   +     P HS T    ++TF +H LG QH
Sbjct: 490 FPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQH 531

>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3966

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 540 PVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPT 400
           PV S+P  KP+P  RR +        SL    P +WE   VS  + LPT
Sbjct: 826 PVKSLPERKPVPAPRRKVGPDCGSPVSLGGDVPNSWEDLAVSSPLDLPT 874

>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3960

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = -3

Query: 540  PVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPTGGSFHLSLTVL 367
            PV S+P  KP+P  RR +        SL    P +WE   VS    LPT        + L
Sbjct: 826  PVKSLPERKPVPAPRRKVGSDCGSPVSLGGDVPNSWEDLAVSSPFDLPTPPEPATPSSEL 885

Query: 366  LRYRSPRSI*PCKVVLADSHGIP 298
            +   SP+ I      L++   IP
Sbjct: 886  VIVSSPQCIFRPATPLSEPAPIP 908

>CCD21_MOUSE (Q8BMK0) Coiled-coil domain-containing protein 21|
          Length = 761

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 643 LVSSKLHPGHG*ITQGSGP*AVTIALLRLAFATAPGGFRSLNQATAYESPAHSSTGTRS 467
           L  SK  PG G + + +GP A +  +L L    APG  +SL+      SP     G +S
Sbjct: 221 LPESKKAPGSGAVFERNGPHASSSGVLPLGLQPAPGLSKSLSSQVWQPSPDPWHPGEQS 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,935,713
Number of Sequences: 219361
Number of extensions: 2084436
Number of successful extensions: 4096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4091
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)