ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB8B_YEAST (P38355) Protein YBR287W 27 9.1
2YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromo... 27 9.1
3VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-e... 27 9.1

>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 195 LILISYSTVME*STGILPESIHKLYSLFISDLFSP 299
           +++I+ +     S+G+LP+   K+ SL   DLF+P
Sbjct: 21  VVIIALAGFWSASSGLLPKQSQKIISLLNVDLFTP 55



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>YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromosome III|
          Length = 610

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 141 WISRILGYYSIFLYDDTILILISY 212
           +ISR L Y  +F  D  ++I+ISY
Sbjct: 438 YISRFLSYLPLFTIDGALMIVISY 461



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>VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-early|
           phosphoprotein PP89)
          Length = 595

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 272 PFYFRPLFPISXXXXIWMSM*PIESCSYNTYIIV 373
           P Y +P         +W  M  IES S +T+++V
Sbjct: 237 PCYTKPFLDAKSQLAVWQQMKAIESESVSTHVVV 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,515,960
Number of Sequences: 219361
Number of extensions: 1035447
Number of successful extensions: 1796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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