ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 30 7.0

>KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 325

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 301 KRLSAAP*MAKVQ*PKASLAYALTPSSMGHVESRVNQQGPPCKAKYSWVTDSESSTVRER 480
           +++ AA   AKV    A + +A+ P       +  N  G   K  Y W+TDS   TV+  
Sbjct: 248 QKVLAAHGAAKVS---AYVTHAVFPKQSYERFTHTNSAGSADKFAYFWITDSCPQTVKAI 304

Query: 481 *KEPP 495
            ++PP
Sbjct: 305 NQQPP 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,356,558
Number of Sequences: 219361
Number of extensions: 1630486
Number of successful extensions: 3392
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3392
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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