Clone Name | basd2o06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474131.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 81 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 140 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 141 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 200 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 201 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 247
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Minus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 33160741 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 33160682 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 33160681 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 33160622 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 33160621 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 33160575
>dbj|AK121500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022A11, full insert sequence Length = 752 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 146 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 205 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 206 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 265 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 266 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 312
>dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H09, full insert sequence Length = 1753 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 146 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 205 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 206 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 265 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 266 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 312
>dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M08, full insert sequence Length = 1774 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 146 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 205 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 206 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 265 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 266 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 312
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence Length = 118971 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Minus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 51131 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 51072 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 51071 cggcaagaactacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 51012 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 51011 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 50965
>dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) mRNA for oryzain alpha, complete cds Length = 1929 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 126 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 185 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 186 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 245 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 246 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 292
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 69.9 bits (35), Expect = 8e-09 Identities = 134/167 (80%) Strand = Plus / Minus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 43390 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 43331 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 43330 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 43271 Query: 254 cctccgtctggtggaccagcacaacgccgccggcgaggccggggtcc 300 |||||| | ||| ||||||||||||||| ||| |||||||||| Sbjct: 43270 cctccggtacatcgacgagcacaacgccgccgccgacgccggggtcc 43224
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 179 gtggaaggccaagttcgggaagacctacagctccgtcggcgaggaggagcgcaggtacgc 238 |||||||||||||| || ||| ||||| |||| ||| |||||||||| || ||||||| Sbjct: 9495602 gtggaaggccaagtacgacaaggcctacgcctccatcgccgaggaggagtgccggtacgc 9495543 Query: 239 cgtgttcaaggagaccctccgtctggtggaccagcacaacgccg 282 ||||||| |||||||| ||| || |||||||||||||||| Sbjct: 9495542 ggtgttcagggagacccgccgcgccgtcgaccagcacaacgccg 9495499 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 22987559 gtcgccggcggcggcggccacg 22987538 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 atggagcataccaggcagct 491 |||||||||||||||||||| Sbjct: 20072705 atggagcataccaggcagct 20072686
>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0005L24 Length = 155365 Score = 63.9 bits (32), Expect = 5e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 179 gtggaaggccaagttcgggaagacctacagctccgtcggcgaggaggagcgcaggtacgc 238 |||||||||||||| || ||| ||||| |||| ||| |||||||||| || ||||||| Sbjct: 25632 gtggaaggccaagtacgacaaggcctacgcctccatcgccgaggaggagtgccggtacgc 25573 Query: 239 cgtgttcaaggagaccctccgtctggtggaccagcacaacgccg 282 ||||||| |||||||| ||| || |||||||||||||||| Sbjct: 25572 ggtgttcagggagacccgccgcgccgtcgaccagcacaacgccg 25529
>dbj|AK071619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100M05, full insert sequence Length = 1867 Score = 60.0 bits (30), Expect = 7e-06 Identities = 102/126 (80%) Strand = Plus / Plus Query: 134 gtacagggagaggagcgatgtggaggcgcggctggtcttcggcgcgtggaaggccaagtt 193 |||| ||||||||||||| | ||||||||||| | | | || | |||||||||| || Sbjct: 146 gtacggggagaggagcgaggaggaggcgcggcggctgtacgcggagtggaaggccgagca 205 Query: 194 cgggaagacctacagctccgtcggcgaggaggagcgcaggtacgccgtgttcaaggagac 253 ||| |||| ||||| | ||||||||||||||||||| ||||||| | ||||| ||| | Sbjct: 206 cggcaagagctacaacgccgtcggcgaggaggagcggcggtacgcggcgttcagggacaa 265 Query: 254 cctccg 259 |||||| Sbjct: 266 cctccg 271
>ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1787 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 166 gtcgccggcggcggcggccacg 187
>ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA Length = 1972 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 169 gtcgccggcggcggcggccacg 190
>ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA Length = 2555 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 170 gtcgccggcggcggcggccacg 191
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 161397 gtcgccggcggcggcggccacg 161376
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 47287 gtcgccggcggcggcggccacg 47266
>dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B01, full insert sequence Length = 1786 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 166 gtcgccggcggcggcggccacg 187
>dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089E10, full insert sequence Length = 1972 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 169 gtcgccggcggcggcggccacg 190
>dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054A11, full insert sequence Length = 2555 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggccacg 107 |||||||||||||||||||||| Sbjct: 170 gtcgccggcggcggcggccacg 191
>gb|AY103676.1| Zea mays PCO102242 mRNA sequence Length = 1878 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 200 gacctacagctccgtcggcgaggaggagcg 229 |||||||| | ||||||||||||||||||| Sbjct: 301 gacctacaacgccgtcggcgaggaggagcg 330
>dbj|AB020961.1| Zea mays mRNA for cysteine protease component of protease-inhibitor complex, complete cds Length = 1828 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 200 gacctacagctccgtcggcgaggaggagcg 229 |||||||| | ||||||||||||||||||| Sbjct: 265 gacctacaacgccgtcggcgaggaggagcg 294
>gb|U12637.1|SEN11 Hemerocallis hybrid cultivar cysteine proteinase (SEN11) mRNA, complete cds Length = 1252 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 390 ccgtcgactggagggagaaagg 411 |||||||||||||||||||||| Sbjct: 399 ccgtcgactggagggagaaagg 420
>gb|AY659324.1| Synthetic construct Peudomonas aeruginosa clone FLH037093.01F PA4771 gene, partial cds Length = 1146 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccggcgaggccggggt 298 ||||||||||||||||||||| Sbjct: 1011 cgccgccggcgaggccggggt 1031
>gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete sequence Length = 130146 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 cgatgtggaggcgcggctggt 169 ||||||||||||||||||||| Sbjct: 116907 cgatgtggaggcgcggctggt 116927
>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence Length = 22437 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccggcgaggccggggt 298 ||||||||||||||||||||| Sbjct: 3287 cgccgccggcgaggccggggt 3307
>gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 of the complete genome Length = 12326 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 cgccgccggcgaggccggggt 298 ||||||||||||||||||||| Sbjct: 9115 cgccgccggcgaggccggggt 9135
>gb|BC108624.1| Xenopus laevis cDNA clone IMAGE:7391458, partial cds Length = 1860 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tcaaggagaccctccgtctg 263 |||||||||||||||||||| Sbjct: 1123 tcaaggagaccctccgtctg 1142
>ref|XM_463417.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 768 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 502 gtcgccggcggcggcggcca 521
>ref|NM_186285.1| Oryza sativa (japonica cultivar-group), mRNA Length = 519 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 248 gtgtcgccggcggcggcggc 229
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 57585 gtcgccggcggcggcggcca 57566
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 14801 gtgtcgccggcggcggcggc 14782
>ref|XM_323064.1| Neurospora crassa OR74A hypothetical protein (NCU03763.1) partial mRNA Length = 1578 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 aagatcaggcccgccgtcga 396 |||||||||||||||||||| Sbjct: 175 aagatcaggcccgccgtcga 194
>ref|XM_956017.1| Neurospora crassa OR74A hypothetical protein (NCU03763.1) partial mRNA Length = 1578 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 aagatcaggcccgccgtcga 396 |||||||||||||||||||| Sbjct: 175 aagatcaggcccgccgtcga 194
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cggcggcggcggccacgtgg 110 |||||||||||||||||||| Sbjct: 7639763 cggcggcggcggccacgtgg 7639782
>gb|AY224587.1| Oryza sativa (japonica cultivar-group) isolate 31145 CHP-rich zinc finger protein-like protein mRNA, partial cds Length = 1635 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 23 gtgtcgccggcggcggcggc 42
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 89544 gtgtcgccggcggcggcggc 89525
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 46352 gtgtcgccggcggcggcggc 46333
>emb|Z97023.1|HVZ97023 Hordeum vulgare mRNA encoding cysteine endopeptidase EP-A Length = 1299 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 tcgccgacatgaccacggaggagt 351 ||||||||||||||||||| |||| Sbjct: 314 tcgccgacatgaccacggacgagt 337
>emb|Z97021.1|HVZ97021 Hordeum vulgare gene encoding cysteine endopeptidase EP-A Length = 2752 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 tcgccgacatgaccacggaggagt 351 ||||||||||||||||||| |||| Sbjct: 1378 tcgccgacatgaccacggacgagt 1401
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 acaacgccgccggcgaggcc 293 |||||||||||||||||||| Sbjct: 183853 acaacgccgccggcgaggcc 183834
>emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cosmid contig 93G11 Length = 86075 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 aagatcaggcccgccgtcga 396 |||||||||||||||||||| Sbjct: 20852 aagatcaggcccgccgtcga 20871
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cggcggcggcggccacgtgg 110 |||||||||||||||||||| Sbjct: 75527 cggcggcggcggccacgtgg 75508
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cggcggctctctcggcggcg 62 |||||||||||||||||||| Sbjct: 349696 cggcggctctctcggcggcg 349677
>ref|XM_688081.1| PREDICTED: Danio rerio similar to Zinc finger protein 647 (LOC564748), mRNA Length = 2378 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tctgagatgaggatgaggaa 37 |||||||||||||||||||| Sbjct: 129 tctgagatgaggatgaggaa 110
>dbj|AK029266.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832406K10 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 3163 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 119 ggcggctctctcggcggcgg 100
>dbj|AK086700.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930046H03 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 3724 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 95 ggcggctctctcggcggcgg 76
>dbj|AK004925.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300007C09 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 2873 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 67 ggcggctctctcggcggcgg 48
>dbj|AK075836.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210021J15 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 2155 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 76 ggcggctctctcggcggcgg 57
>dbj|AK018168.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330414A07 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 1557 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 80 ggcggctctctcggcggcgg 61
>dbj|AK089919.1| Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN full-length enriched library, clone:G430003E02 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 3129 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 51 ggcggctctctcggcggcgg 32
>dbj|AK075717.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300017K19 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 2136 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 64 ggcggctctctcggcggcgg 45
>dbj|AK011519.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610022P10 product:NIMA (never in mitosis gene a)-related expressed kinase 6, full insert sequence Length = 1496 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 76 ggcggctctctcggcggcgg 57
>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197909 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 tggtacagggagaggagcgatgtg 155 |||||||||| ||||||||||||| Sbjct: 143437 tggtacagggggaggagcgatgtg 143414
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 24362637 gtgtcgccggcggcggcggc 24362656 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 6306266 gtgtcgccggcggcggcggc 6306247
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgccggcgaggccggggtcc 300 |||||||||||||||||||| Sbjct: 21076078 cgccggcgaggccggggtcc 21076097 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 19012321 gtcgccggcggcggcggcca 19012302 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tgtcgccggcggcggcggcc 104 |||||||||||||||||||| Sbjct: 14758410 tgtcgccggcggcggcggcc 14758391
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 2319261 gtgtcgccggcggcggcggc 2319242
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 24500619 gtgtcgccggcggcggcggc 24500600
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cggcggcggcggccacgtgg 110 |||||||||||||||||||| Sbjct: 7637598 cggcggcggcggccacgtgg 7637617
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tctatatggagcataccagg 486 |||||||||||||||||||| Sbjct: 14225361 tctatatggagcataccagg 14225342
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 28826413 gtcgccggcggcggcggcca 28826394
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 7268504 gtcgccggcggcggcggcca 7268485
>gb|AE004956.1| Pseudomonas aeruginosa PAO1, section 517 of 529 of the complete genome Length = 11660 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 266 ggaccagcacaacgccgccggcgaggcc 293 ||||| || ||||||||||||||||||| Sbjct: 11072 ggacctgcgcaacgccgccggcgaggcc 11099
>gb|AF218847.1|AF218847 Mus musculus NIMA-related serine/threonine kinase (Nek6) mRNA, complete cds Length = 2249 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 92 ggcggctctctcggcggcgg 73
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 44456 gtcgccggcggcggcggcca 44437
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgccggcgaggccggggtcc 300 |||||||||||||||||||| Sbjct: 168167 cgccggcgaggccggggtcc 168186
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tgtcgccggcggcggcggcc 104 |||||||||||||||||||| Sbjct: 43799 tgtcgccggcggcggcggcc 43780
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 22269 gtgtcgccggcggcggcggc 22250
>dbj|AP004856.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1570_H12 Length = 129767 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tctatatggagcataccagg 486 |||||||||||||||||||| Sbjct: 125381 tctatatggagcataccagg 125362
>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_E02 Length = 125860 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tctatatggagcataccagg 486 |||||||||||||||||||| Sbjct: 30511 tctatatggagcataccagg 30492
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 atggagcataccaggcagct 491 |||||||||||||||||||| Sbjct: 19251 atggagcataccaggcagct 19232
>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0477F03 Length = 176120 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 atggagcataccaggcagct 491 |||||||||||||||||||| Sbjct: 144556 atggagcataccaggcagct 144537
>dbj|AK101932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073H12, full insert sequence Length = 2167 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 113 gtgtcgccggcggcggcggc 132
>dbj|AK069500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H01, full insert sequence Length = 1286 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgtcgccggcggcggcggcc 104 |||||||||||||||||||| Sbjct: 434 tgtcgccggcggcggcggcc 453
>dbj|AK060116.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E08, full insert sequence Length = 1111 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtcgccggcggcggcggcca 105 |||||||||||||||||||| Sbjct: 561 gtcgccggcggcggcggcca 580
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 92960 gtgtcgccggcggcggcggc 92941
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgccggcgaggccggggtcc 300 |||||||||||||||||||| Sbjct: 97378 cgccggcgaggccggggtcc 97397
>gb|U94591.1|HVU94591 Hordeum vulgare cysteine proteinase precursor, mRNA, complete cds Length = 1328 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 tcgccgacatgaccacggaggagt 351 ||||||||||||||||||| |||| Sbjct: 322 tcgccgacatgaccacggacgagt 345
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 24674306 gtgtcgccggcggcggcggc 24674325 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gtgtcgccggcggcggcggc 103 |||||||||||||||||||| Sbjct: 6372733 gtgtcgccggcggcggcggc 6372714
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggccggggtccccgtggccc 309 |||||||||||||||||||| Sbjct: 1752297 ggccggggtccccgtggccc 1752316
>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence Length = 187465 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 tggtacagggagaggagcgatgtg 155 |||||||||| ||||||||||||| Sbjct: 125684 tggtacagggggaggagcgatgtg 125707
>ref|NM_021606.2| Mus musculus NIMA (never in mitosis gene a)-related expressed kinase 6 (Nek6), mRNA Length = 3724 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 95 ggcggctctctcggcggcgg 76
>emb|AL928896.6| Mouse DNA sequence from clone RP23-42H18 on chromosome 2, complete sequence Length = 193932 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggcggctctctcggcggcgg 63 |||||||||||||||||||| Sbjct: 111324 ggcggctctctcggcggcgg 111305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,731,503 Number of Sequences: 3902068 Number of extensions: 3731503 Number of successful extensions: 112524 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109287 Number of HSP's gapped (non-prelim): 3226 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)