ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466871.1| Oryza sativa (japonica cultivar-group), mRNA 161 4e-36
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
3dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
4dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 4e-36
5gb|AC105310.3| Homo sapiens BAC clone RP11-8P17 from 4, complete... 44 0.59
6emb|CR391962.5| Zebrafish DNA sequence from clone CH211-215K15 i... 42 2.3
7ref|XM_425692.1| PREDICTED: Gallus gallus similar to Glutathione... 40 9.2
8gb|AC156937.4| Mus musculus BAC clone RP23-355I5 from chromosome... 40 9.2
9ref|XM_989400.1| PREDICTED: Mus musculus similar to naked cuticl... 40 9.2
10ref|XM_909079.2| PREDICTED: Mus musculus similar to naked cuticl... 40 9.2
11gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p... 40 9.2
12gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete s... 40 9.2
13gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete s... 40 9.2
14ref|XM_780998.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.2
15emb|AL928592.13| Mouse DNA sequence from clone RP24-168J7 on chr... 40 9.2
16gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, comple... 40 9.2
17gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 9.2
18dbj|AK020249.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 9.2
19gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosom... 40 9.2
20gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complet... 40 9.2
21gb|AY653535.1| Saccharophagus degradans beta-agarase I (agaB) ge... 40 9.2
22gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, comple... 40 9.2
23gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 9.2 
>ref|XM_466871.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3530

 Score =  161 bits (81), Expect = 4e-36
 Identities = 210/253 (83%)
 Strand = Plus / Plus

                                                                       
Query: 420 ggccgggtcatcaggctggacctccatggcaggaacctcaagggcgagctggcactttcg 479
           |||||||||||| ||||||||||||| |||| ||| || | ||||||||||||| | |||
Sbjct: 464 ggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtctcg 523

                                                                       
Query: 480 cttgcacagctggaccatctccagtggctcaacctctccaataacaacctccgtggtgcc 539
           || |  ||||||||||| ||||||||||||||||| ||||  |||||||||| ||| |||
Sbjct: 524 ctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggggcc 583

                                                                       
Query: 540 atcccggcacccctcgttcagctccataggctgcagcggctcgacgtaagcaacaacgag 599
            |||||||| |||| || |||||||| ||||| || || || ||  | ||| |||| |||
Sbjct: 584 gtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgag 643

                                                                       
Query: 600 ctttccggcacattcccggccaacgtgtcactcccagtgattgatgtgttcaacatatcc 659
            | || ||   ||||||| |||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 644 ttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatcc 703

                        
Query: 660 ttcaactcattca 672
            ||||||||||||
Sbjct: 704 ctcaactcattca 716



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 62  ccagctttacgccccaaatggcttagatatcacatagctcctgaa 106
           |||| ||||||| |||||||||||  |||||||||| ||||||||
Sbjct: 94  ccagttttacgcaccaaatggcttgcatatcacatatctcctgaa 138
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  161 bits (81), Expect = 4e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                            
Query: 420      ggccgggtcatcaggctggacctccatggcaggaacctcaagggcgagctggcactttcg 479
                |||||||||||| ||||||||||||| |||| ||| || | ||||||||||||| | |||
Sbjct: 25197733 ggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtctcg 25197674

                                                                            
Query: 480      cttgcacagctggaccatctccagtggctcaacctctccaataacaacctccgtggtgcc 539
                || |  ||||||||||| ||||||||||||||||| ||||  |||||||||| ||| |||
Sbjct: 25197673 ctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggggcc 25197614

                                                                            
Query: 540      atcccggcacccctcgttcagctccataggctgcagcggctcgacgtaagcaacaacgag 599
                 |||||||| |||| || |||||||| ||||| || || || ||  | ||| |||| |||
Sbjct: 25197613 gtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgag 25197554

                                                                            
Query: 600      ctttccggcacattcccggccaacgtgtcactcccagtgattgatgtgttcaacatatcc 659
                 | || ||   ||||||| |||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 25197553 ttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatcc 25197494

                             
Query: 660      ttcaactcattca 672
                 ||||||||||||
Sbjct: 25197493 ctcaactcattca 25197481



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 62       ccagctttacgccccaaatggcttagatatcacatagctcctgaa 106
                |||| ||||||| |||||||||||  |||||||||| ||||||||
Sbjct: 25198103 ccagttttacgcaccaaatggcttgcatatcacatatctcctgaa 25198059
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score =  161 bits (81), Expect = 4e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                         
Query: 420   ggccgggtcatcaggctggacctccatggcaggaacctcaagggcgagctggcactttcg 479
             |||||||||||| ||||||||||||| |||| ||| || | ||||||||||||| | |||
Sbjct: 98126 ggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtctcg 98067

                                                                         
Query: 480   cttgcacagctggaccatctccagtggctcaacctctccaataacaacctccgtggtgcc 539
             || |  ||||||||||| ||||||||||||||||| ||||  |||||||||| ||| |||
Sbjct: 98066 ctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggggcc 98007

                                                                         
Query: 540   atcccggcacccctcgttcagctccataggctgcagcggctcgacgtaagcaacaacgag 599
              |||||||| |||| || |||||||| ||||| || || || ||  | ||| |||| |||
Sbjct: 98006 gtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgag 97947

                                                                         
Query: 600   ctttccggcacattcccggccaacgtgtcactcccagtgattgatgtgttcaacatatcc 659
              | || ||   ||||||| |||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 97946 ttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatcc 97887

                          
Query: 660   ttcaactcattca 672
              ||||||||||||
Sbjct: 97886 ctcaactcattca 97874



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 62    ccagctttacgccccaaatggcttagatatcacatagctcctgaa 106
             |||| ||||||| |||||||||||  |||||||||| ||||||||
Sbjct: 98496 ccagttttacgcaccaaatggcttgcatatcacatatctcctgaa 98452
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>dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D09, full
           insert sequence
          Length = 3530

 Score =  161 bits (81), Expect = 4e-36
 Identities = 210/253 (83%)
 Strand = Plus / Plus

                                                                       
Query: 420 ggccgggtcatcaggctggacctccatggcaggaacctcaagggcgagctggcactttcg 479
           |||||||||||| ||||||||||||| |||| ||| || | ||||||||||||| | |||
Sbjct: 464 ggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtctcg 523

                                                                       
Query: 480 cttgcacagctggaccatctccagtggctcaacctctccaataacaacctccgtggtgcc 539
           || |  ||||||||||| ||||||||||||||||| ||||  |||||||||| ||| |||
Sbjct: 524 ctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggggcc 583

                                                                       
Query: 540 atcccggcacccctcgttcagctccataggctgcagcggctcgacgtaagcaacaacgag 599
            |||||||| |||| || |||||||| ||||| || || || ||  | ||| |||| |||
Sbjct: 584 gtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgag 643

                                                                       
Query: 600 ctttccggcacattcccggccaacgtgtcactcccagtgattgatgtgttcaacatatcc 659
            | || ||   ||||||| |||||||||| |||||||||||||| || ||||| ||||||
Sbjct: 644 ttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatcc 703

                        
Query: 660 ttcaactcattca 672
            ||||||||||||
Sbjct: 704 ctcaactcattca 716



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 62  ccagctttacgccccaaatggcttagatatcacatagctcctgaa 106
           |||| ||||||| |||||||||||  |||||||||| ||||||||
Sbjct: 94  ccagttttacgcaccaaatggcttgcatatcacatatctcctgaa 138
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>gb|AC105310.3| Homo sapiens BAC clone RP11-8P17 from 4, complete sequence
          Length = 121466

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 145   tcagcatagctcttcttgcatcaatg 170
             |||||||||||| |||||||||||||
Sbjct: 68097 tcagcatagctcctcttgcatcaatg 68122
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>emb|CR391962.5| Zebrafish DNA sequence from clone CH211-215K15 in linkage group 16,
             complete sequence
          Length = 144859

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   atttcttgatgaaacgcacta 195
             |||||||||||||||||||||
Sbjct: 55929 atttcttgatgaaacgcacta 55949
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>ref|XM_425692.1| PREDICTED: Gallus gallus similar to Glutathione synthetase
            (Glutathione synthase) (GSH synthetase) (GSH-S)
            (LOC428135), mRNA
          Length = 2277

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 383  ctgctgtgcatgggcgggtg 402
            ||||||||||||||||||||
Sbjct: 1223 ctgctgtgcatgggcgggtg 1242
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>gb|AC156937.4| Mus musculus BAC clone RP23-355I5 from chromosome 8, complete sequence
          Length = 198479

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    aagctcctgcaacccagatg 294
              ||||||||||||||||||||
Sbjct: 157851 aagctcctgcaacccagatg 157832
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>ref|XM_989400.1| PREDICTED: Mus musculus similar to naked cuticle 1 homolog
            (LOC671838), mRNA
          Length = 4518

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  aagctcctgcaacccagatg 294
            ||||||||||||||||||||
Sbjct: 2717 aagctcctgcaacccagatg 2736
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>ref|XM_909079.2| PREDICTED: Mus musculus similar to naked cuticle 1 homolog
            (LOC634379), mRNA
          Length = 4410

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  aagctcctgcaacccagatg 294
            ||||||||||||||||||||
Sbjct: 2620 aagctcctgcaacccagatg 2639
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>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence
          Length = 167559

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 634   cagtgattgatgtgttcaacatat 657
             ||||||||| ||||||||||||||
Sbjct: 36013 cagtgattggtgtgttcaacatat 36036
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>gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete sequence
          Length = 116410

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   cctctccaataacaacctcc 531
             ||||||||||||||||||||
Sbjct: 33328 cctctccaataacaacctcc 33309
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>gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete sequence
          Length = 116410

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   cctctccaataacaacctcc 531
             ||||||||||||||||||||
Sbjct: 33328 cctctccaataacaacctcc 33309
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>ref|XM_780998.1| PREDICTED: Strongylocentrotus purpuratus similar to smooth muscle
            myosin heavy chain 11 isoform SM2 (LOC580973), mRNA
          Length = 9135

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 543  ccggcacccctcgttcagctccat 566
            ||||||| ||||||||||||||||
Sbjct: 6717 ccggcactcctcgttcagctccat 6694
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>emb|AL928592.13| Mouse DNA sequence from clone RP24-168J7 on chromosome 4 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 126611

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    ttgttgcttgggaaaccagcttta 70
             ||||||||||| ||||||||||||
Sbjct: 85969 ttgttgcttggaaaaccagcttta 85992
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>gb|AC068657.6| Homo sapiens chromosome 5 clone CTB-67I13, complete sequence
          Length = 128332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  cctgaacacagcaaacaaga 120
            ||||||||||||||||||||
Sbjct: 4291 cctgaacacagcaaacaaga 4310
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      gccgccaccattgttgcttg 56
               ||||||||||||||||||||
Sbjct: 1512582 gccgccaccattgttgcttg 1512601
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>dbj|AK020249.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030215G15 product:unclassifiable, full
           insert sequence
          Length = 1124

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 aagctcctgcaacccagatg 294
           ||||||||||||||||||||
Sbjct: 592 aagctcctgcaacccagatg 611
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>gb|AC159207.2| Mus musculus BAC clone RP23-150H14 from chromosome 13, complete
             sequence
          Length = 191824

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tgaacacagcaaacaagaac 122
             ||||||||||||||||||||
Sbjct: 79524 tgaacacagcaaacaagaac 79505
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>gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complete sequence
          Length = 139145

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 646   tgttcaacatatccttcaactcat 669
             ||||||| ||||||||||||||||
Sbjct: 38854 tgttcaaaatatccttcaactcat 38831
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>gb|AY653535.1| Saccharophagus degradans beta-agarase I (agaB) gene, complete cds
          Length = 1782

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  gccgccaccattgttgcttg 56
           ||||||||||||||||||||
Sbjct: 885 gccgccaccattgttgcttg 866
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>gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, complete sequence
          Length = 233117

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    aagctcctgcaacccagatg 294
              ||||||||||||||||||||
Sbjct: 189883 aagctcctgcaacccagatg 189902
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 646     tgttcaacatatccttcaactcat 669
               ||||||| ||||||||||||||||
Sbjct: 1675181 tgttcaaaatatccttcaactcat 1675158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,750,866
Number of Sequences: 3902068
Number of extensions: 5750866
Number of successful extensions: 102071
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101946
Number of HSP's gapped (non-prelim): 125
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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