>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1431

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = -2

Query: 409 SSRPVVYCLKHTKGVPSPPIVVYXTXQDNTQCTVKIQ-----HKSCTFKVCE 269
           ++ P  Y +K  K VP PP V       +  CT  +Q     HK C F + E
Sbjct: 300 TTAPTAYGVK--KNVPQPPTVTSTGVSTSATCTTSVQSDDLLHKDCKFLILE 349

>IL1R2_MOUSE (P27931) Interleukin-1 receptor type II precursor (IL-1R-2)|
           (IL-1R-beta) (CD121b antigen)
          Length = 410

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = -1

Query: 371 RCPVSPHSSISNVXRQHTVHSENPTQIVHVQSL*V*STHDLLSFSFYASHKLSPLRDEPR 192
           RCP++PHS IS+                        S+H  L++S   S +L P RDEPR
Sbjct: 63  RCPLAPHSDISS------------------------SSHSFLTWSKLDSSQLIP-RDEPR 97

Query: 191 IQLP-YV*WISLN*RRSYCPVNQTPSGKYHVSF 96
           + +   + WI         P  Q  SG Y  +F
Sbjct: 98  MWVKGNILWI--------LPAVQQDSGTYICTF 122

>VA38_VARV (P33853) Protein A38|
          Length = 277

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -2

Query: 337 TXQDNT--QCTVKIQHKSCTFKVCEFNXHTTFCPFLFMLATSYLLY-EMSLVSNSLMFS 170
           T +DNT  + TVK+  +   +    FN H T   F+F   T +LL+ E++  S S++FS
Sbjct: 98  TCEDNTGIKSTVKLVQRHTNW----FNDHHTMLMFIFTGITLFLLFLEIAYTSISVVFS 152

>ACKA_METTE (P38502) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 408

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -2

Query: 259 HTTFCPFLFMLATSYLLYEMSLVSNSLMFSGSHSTDVGPTALSIKRPQEST 107
           H T  P+ +M A  Y LYE   V        SH       AL + +P E T
Sbjct: 152 HQTMPPYAYMYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEET 202

>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = -2

Query: 373 KGVPSPPIVVYXTXQDNTQCTVKIQ-----HKSCTFKVCE 269
           K VP PP V       +  CT  +Q     HK C F + E
Sbjct: 310 KNVPQPPTVTSTGVCTSATCTTSVQSDDLLHKDCKFLILE 349

>CIAS1_MOUSE (Q8R4B8) Cold autoinflammatory syndrome 1 protein homolog|
           (PYRIN-containing APAF1-like protein 1) (Mast cell
           maturation-associated inducible protein 1) (Cryopyrin)
          Length = 1033

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 328 DNTQCTVKIQHKSCTFKVCEFNXHTTFCPFLF-MLATSYLLYEMSLVSNSL 179
           D  QC     H +C+ ++      ++FC  LF  L+T+  L E+ L  N+L
Sbjct: 700 DQVQCVFPDTHVACSSRLVNCCLTSSFCRGLFSSLSTNRSLTELDLSDNTL 750


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,056,674
Number of Sequences: 219361
Number of extensions: 1025480
Number of successful extensions: 2246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2246
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)