>dbj|AK115607.1| Ciona intestinalis cDNA, clone:cilv007c23, full insert sequence
          Length = 678

 Score =  781 bits (394), Expect = 0.0
 Identities = 415/423 (98%), Gaps = 1/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   acacaaancgtgnatgtttgaccgagttgctcgtggtaattctcaacattcaagtctgtt 62
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29  acacaaagcgtg-atgtttgaccgagttgctcgtggtaattctcaacattcaagtctgtt 87

                                                                       
Query: 63  ggaagttcttttcaaagattcgtccacccttccaaagctgacgtggtactttcctgaggg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  ggaagttcttttcaaagattcgtccacccttccaaagctgacgtggtactttcctgaggg 147

                                                                       
Query: 123 cgtttgattgacagggcagtaggacctacgtcagttgagtgagatccactaaacataagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cgtttgattgacagggcagtaggacctacgtcagttgagtgagatccactaaacataagg 207

                                                                       
Query: 183 gagttggatacgaggctcatctcgtaaaggagataacttgtggctagcataaaaagaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gagttggatacgaggctcatctcgtaaaggagataacttgtggctagcataaaaagaaaa 267

                                                                       
Query: 243 ggacagaaggtcgtgtgtngattaaactcacaaactttgaacgtgcacgatttgtgttgg 302
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggacagaaggtcgtgtgtcgattaaactcacaaactttgaacgtgcacgatttgtgttgg 327

                                                                       
Query: 303 attttcactgtgcactgtgtgttgtcttgnaacgttngatatactactatggggggagac 362
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 328 attttcactgtgcactgtgtgttgtcttgtaacgttagatatactactatggggggagac 387

                                                                       
Query: 363 gggacacctttngtgtgttttaaacaataaacaacgggtcgtgaggatacggntttntga 422
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 388 gggacacctttagtgtgttttaaacaataaacaacgggtcgtgaggatacggttttatga 447

              
Query: 423 atg 425
           |||
Sbjct: 448 atg 450

>dbj|AK116731.1| Ciona intestinalis cDNA, clone:ciad025c08, full insert sequence
          Length = 2582

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 341  atatactactatggggggagacgggacaccttt 373
            ||||| ||||||||||| |||||||||||||||
Sbjct: 2157 atatagtactatgggggaagacgggacaccttt 2189

>dbj|AK117059.1| Ciona intestinalis cDNA, clone:cits023e15, full insert sequence
          Length = 1703

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 377  gtgttttaaacaataaacaacgg 399
            |||||||||||||||||||||||
Sbjct: 1518 gtgttttaaacaataaacaacgg 1540

>dbj|AK115935.1| Ciona intestinalis cDNA, clone:cilv042i01, full insert sequence
          Length = 1760

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 376  tgtgttttaaacaataaacaacg 398
            |||||||||||||||||||||||
Sbjct: 1366 tgtgttttaaacaataaacaacg 1388

>dbj|AK115846.1| Ciona intestinalis cDNA, clone:cilv030l08, full insert sequence
          Length = 1662

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 377  gtgttttaaacaataaacaacgg 399
            |||||||||||||||||||||||
Sbjct: 1269 gtgttttaaacaataaacaacgg 1247

>gb|AY827840.1| Ciona intestinalis clone BAC XNI, complete sequence
          Length = 128572

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 377   gtgttttaaacaataaacaacgg 399
             |||||||||||||||||||||||
Sbjct: 51285 gtgttttaaacaataaacaacgg 51307



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    tgtgttttaaacaataaacaacgg 399
              ||||||||||||||| ||||||||
Sbjct: 106644 tgtgttttaaacaattaacaacgg 106667

>gb|AC140183.2| Mus musculus BAC clone RP24-350N4 from chromosome 9, complete sequence
          Length = 181029

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 54     aagtctgttggaagttcttttc 75
              ||||||||||||||||||||||
Sbjct: 160016 aagtctgttggaagttcttttc 159995

>dbj|AK173666.1| Ciona intestinalis cDNA, clone:cilv010l05, full insert sequence
          Length = 807

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 352 tggggggagacgggacaccttt 373
           ||||||||||||||||||||||
Sbjct: 437 tggggggagacgggacaccttt 416

>dbj|AK114056.1| Ciona intestinalis cDNA, clone:cicl025n09, full insert sequence
          Length = 1482

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 352 tggggggagacgggacaccttt 373
           ||||||||||||||||||||||
Sbjct: 973 tggggggagacgggacaccttt 952

>dbj|AK113336.1| Ciona intestinalis cDNA, clone:ciad038o01, full insert sequence
          Length = 2151

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 352  tggggggagacgggacaccttt 373
            ||||||||||||||||||||||
Sbjct: 1669 tggggggagacgggacaccttt 1690

>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
             complete sequence
          Length = 123480

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   aaaaagaaaaggacagaaggt 253
             |||||||||||||||||||||
Sbjct: 71299 aaaaagaaaaggacagaaggt 71279

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 233      aaaaagaaaaggacagaaggt 253
                |||||||||||||||||||||
Sbjct: 32454498 aaaaagaaaaggacagaaggt 32454478

>dbj|AK113680.1| Ciona intestinalis cDNA, clone:cicl003n17, full insert sequence
          Length = 3070

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 379  gttttaaacaataaacaacgg 399
            |||||||||||||||||||||
Sbjct: 2751 gttttaaacaataaacaacgg 2731

>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ataaaaagaaaaggacagaa 250
             ||||||||||||||||||||
Sbjct: 62799 ataaaaagaaaaggacagaa 62818

>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ataaaaagaaaaggacagaa 250
             ||||||||||||||||||||
Sbjct: 34336 ataaaaagaaaaggacagaa 34355

>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
          Length = 99712

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ataaaaagaaaaggacagaa 250
             ||||||||||||||||||||
Sbjct: 52318 ataaaaagaaaaggacagaa 52337

>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ataaaaagaaaaggacagaa 250
              ||||||||||||||||||||
Sbjct: 117260 ataaaaagaaaaggacagaa 117241

>gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155733

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   cactaaacataagggagttg 188
             ||||||||||||||||||||
Sbjct: 15214 cactaaacataagggagttg 15233

>gb|AC096546.1| Homo sapiens BAC clone CTD-2005P16 from 2, complete sequence
          Length = 103922

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   ttgtgttggattttcactgt 313
             ||||||||||||||||||||
Sbjct: 74126 ttgtgttggattttcactgt 74107

>emb|AL929027.10| Mouse DNA sequence from clone RP23-217F24 on chromosome 2, complete
             sequence
          Length = 174282

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 164   agatccactaaacataagggagttggat 191
             ||||||||||||  ||||||||||||||
Sbjct: 31894 agatccactaaaactaagggagttggat 31921

>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    aaaaggacagaaggtcgtgt 258
              ||||||||||||||||||||
Sbjct: 617631 aaaaggacagaaggtcgtgt 617650

>dbj|AK116459.1| Ciona intestinalis cDNA, clone:citb041b10, full insert sequence
          Length = 1790

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 354  gggggagacgggacaccttt 373
            ||||||||||||||||||||
Sbjct: 1437 gggggagacgggacaccttt 1456

>dbj|AK115539.1| Ciona intestinalis cDNA, clone:cilv001f14, full insert sequence
          Length = 1241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 376 tgtgttttaaacaataaacaacgg 399
           ||||||||||||||| ||||||||
Sbjct: 822 tgtgttttaaacaattaacaacgg 799

>dbj|AK114133.1| Ciona intestinalis cDNA, clone:cicl031j24, full insert sequence
          Length = 1082

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 376 tgtgttttaaacaataaacaacgg 399
           ||||||||||||||| ||||||||
Sbjct: 742 tgtgttttaaacaattaacaacgg 765

>dbj|AK113535.1| Ciona intestinalis cDNA, clone:ciad068m13, full insert sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 376 tgtgttttaaacaataaacaacgg 399
           ||||||||||||||| ||||||||
Sbjct: 817 tgtgttttaaacaattaacaacgg 840

>dbj|AK112388.1| Ciona intestinalis cDNA, clone:ciad046i02, full insert sequence
          Length = 1952

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  tgtgttttaaacaataaacaacgg 399
            ||||||||||||||| ||||||||
Sbjct: 1824 tgtgttttaaacaattaacaacgg 1801

>dbj|AK112322.1| Ciona intestinalis cDNA, clone:ciad020o24, full insert sequence
          Length = 1803

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 gtgttttaaacaataaacaa 396
           ||||||||||||||||||||
Sbjct: 899 gtgttttaaacaataaacaa 880

>dbj|AK112226.1| Ciona intestinalis cDNA, clone:ciad005c08, full insert sequence
          Length = 1575

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  tgtgttttaaacaataaacaacgg 399
            ||||||||||||||| ||||||||
Sbjct: 1245 tgtgttttaaacaattaacaacgg 1222

>tpd|BR000202.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(FYVE)-9 mRNA for zinc finger
           protein, complete cds
          Length = 1263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 342 tatactactatggggggagacgggacaccttt 373
           |||| ||||||||||||||| || ||||||||
Sbjct: 806 tatagtactatggggggagatggaacaccttt 837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,588,873
Number of Sequences: 3902068
Number of extensions: 3588873
Number of successful extensions: 63711
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63604
Number of HSP's gapped (non-prelim): 107
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)