Clone Name | basd2n23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_465422.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2750 Score = 168 bits (85), Expect = 8e-39 Identities = 194/228 (85%), Gaps = 2/228 (0%) Strand = Plus / Plus Query: 25 agatgaatttggagtacttccctattgattcccagggtttcataactgaccctgaaaggg 84 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| | Sbjct: 876 agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935 Query: 85 cattggaanagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 143 ||||||| ||||||| |||| | ||| || |||| |||| ||||||||||||||| Sbjct: 936 cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994 Query: 144 aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 203 || ||||||||||||| ||||||||||| |||||||||||||||||||| || | ||| Sbjct: 995 aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054 Query: 204 cactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251 |||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 1102
>dbj|AK111848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148D21, full insert sequence Length = 2751 Score = 168 bits (85), Expect = 8e-39 Identities = 194/228 (85%), Gaps = 2/228 (0%) Strand = Plus / Plus Query: 25 agatgaatttggagtacttccctattgattcccagggtttcataactgaccctgaaaggg 84 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| | Sbjct: 876 agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935 Query: 85 cattggaanagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 143 ||||||| ||||||| |||| | ||| || |||| |||| ||||||||||||||| Sbjct: 936 cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994 Query: 144 aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 203 || ||||||||||||| ||||||||||| |||||||||||||||||||| || | ||| Sbjct: 995 aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054 Query: 204 cactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251 |||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 1102
>ref|XM_471317.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1998 Score = 113 bits (57), Expect = 4e-22 Identities = 114/134 (85%) Strand = Plus / Plus Query: 150 atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 209 ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 562 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 621 Query: 210 cgcattgccaagaccattgatgcttctacaatgacaacactaanggacatggnncccaca 269 || |||||| ||| |||||||||||||| ||||||||||| || ||| |||||| Sbjct: 622 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 681 Query: 270 aagattgctgctgg 283 ||| |||||||||| Sbjct: 682 aagcttgctgctgg 695 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 ggtgcactcagtgagatgaatttgga 37 ||||||||||||||||||||| |||| Sbjct: 424 ggtgcactcagtgagatgaatctgga 449
>dbj|AK119369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H07, full insert sequence Length = 3904 Score = 113 bits (57), Expect = 4e-22 Identities = 114/134 (85%) Strand = Plus / Plus Query: 150 atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 209 ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1490 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 1549 Query: 210 cgcattgccaagaccattgatgcttctacaatgacaacactaanggacatggnncccaca 269 || |||||| ||| |||||||||||||| ||||||||||| || ||| |||||| Sbjct: 1550 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 1609 Query: 270 aagattgctgctgg 283 ||| |||||||||| Sbjct: 1610 aagcttgctgctgg 1623 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 ggtgcactcagtgagatgaatttgga 37 ||||||||||||||||||||| |||| Sbjct: 1352 ggtgcactcagtgagatgaatctgga 1377
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 1e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 124 acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatttgcatcaa 183 |||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| Sbjct: 15054255 acaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtttgcatcaa 15054196 Query: 184 tgaggg 189 |||||| Sbjct: 15054195 tgaggg 15054190 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 25 agatgaatttggagtacttccctattgattcccagg 60 ||||||||||||||||||| ||||||||||||||| Sbjct: 15055641 agatgaatttggagtactttgctattgattcccagg 15055606 Score = 46.1 bits (23), Expect = 0.080 Identities = 44/51 (86%) Strand = Plus / Minus Query: 201 gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251 ||||||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 15052278 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 15052228
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0533E11 Length = 150678 Score = 91.7 bits (46), Expect = 1e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 124 acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatttgcatcaa 183 |||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| Sbjct: 60036 acaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtttgcatcaa 59977 Query: 184 tgaggg 189 |||||| Sbjct: 59976 tgaggg 59971 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 25 agatgaatttggagtacttccctattgattcccagg 60 ||||||||||||||||||| ||||||||||||||| Sbjct: 61422 agatgaatttggagtactttgctattgattcccagg 61387 Score = 46.1 bits (23), Expect = 0.080 Identities = 44/51 (86%) Strand = Plus / Minus Query: 201 gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251 ||||||||||| | |||||||| |||||||||||| || |||||||||| Sbjct: 58059 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 58009
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 69.9 bits (35), Expect = 5e-09 Identities = 80/96 (83%) Strand = Plus / Minus Query: 188 ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 247 ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||| Sbjct: 97802 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 97743 Query: 248 actaanggacatggnncccacaaagattgctgctgg 283 |||| || ||| ||||||||| |||||||||| Sbjct: 97742 actacgagatttggcacccacaaagcttgctgctgg 97707 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 150 atggctactcgtatatctacagtatttgcatcaatgaggg 189 ||||| |||||||| |||||||||| ||||||||||||| Sbjct: 98763 atggccactcgtattgctacagtattcgcatcaatgaggg 98724
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 5e-09 Identities = 80/96 (83%) Strand = Plus / Minus Query: 188 ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 247 ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||| Sbjct: 10002852 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 10002793 Query: 248 actaanggacatggnncccacaaagattgctgctgg 283 |||| || ||| ||||||||| |||||||||| Sbjct: 10002792 actacgagatttggcacccacaaagcttgctgctgg 10002757 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 150 atggctactcgtatatctacagtatttgcatcaatgaggg 189 ||||| |||||||| |||||||||| ||||||||||||| Sbjct: 10003813 atggccactcgtattgctacagtattcgcatcaatgaggg 10003774
>dbj|AK100230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I19, full insert sequence Length = 2534 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 1 tacctcgtattggtgcactcagtgagatgaatttggagt 39 |||| |||||||||||||| || |||||||||||||||| Sbjct: 463 taccacgtattggtgcactaagagagatgaatttggagt 501
>emb|BX324129.11| Zebrafish DNA sequence from clone CH211-221D5 in linkage group 2, complete sequence Length = 111186 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 126 aaatacaatgcttgtttgaatgca 149 |||||||||||||||||||||||| Sbjct: 65244 aaatacaatgcttgtttgaatgca 65221
>ref|NM_101108.2| Arabidopsis thaliana KEU (KEULE); protein transporter AT1G12360 (KEU) mRNA, complete cds Length = 2540 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Plus Query: 1 tacctcgtattggtgcactcagtgagatgaatttggagtacttccctattgattcccagg 60 ||||||| ||||| ||| | || |||||||||||||||| || | |||||| ||||| Sbjct: 712 tacctcggattggagcattgagagagatgaatttggagttttttgccattgatagccagg 771 Query: 61 gtttcataac 70 |||||||||| Sbjct: 772 gtttcataac 781
>gb|AF331066.1|AF331066 Arabidopsis thaliana KEULE mRNA, complete cds Length = 2001 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Plus Query: 1 tacctcgtattggtgcactcagtgagatgaatttggagtacttccctattgattcccagg 60 ||||||| ||||| ||| | || |||||||||||||||| || | |||||| ||||| Sbjct: 416 tacctcggattggagcattgagagagatgaatttggagttttttgccattgatagccagg 475 Query: 61 gtttcataac 70 |||||||||| Sbjct: 476 gtttcataac 485
>gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, complete sequence Length = 165586 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ggaattatctctccaaatata 309 ||||||||||||||||||||| Sbjct: 39769 ggaattatctctccaaatata 39749
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaggcttcaacaaatacaat 134 |||||||||||||||||||| Sbjct: 80709 aaggcttcaacaaatacaat 80690 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaggcttcaacaaatacaat 134 |||||||||||||||||||| Sbjct: 71895 aaggcttcaacaaatacaat 71876
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ttccccgtgtgcactaccgc 212 |||||||||||||||||||| Sbjct: 376632 ttccccgtgtgcactaccgc 376613
>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete sequence Length = 155342 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 atgcttgtttgaatgcaatggcta 156 ||||||||| |||||||||||||| Sbjct: 64236 atgcttgttagaatgcaatggcta 64259
>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the 3'end of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820), the 5'end of a novel gene (KIAA0608) and a CpG island, complete sequence Length = 153449 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ccctattgattcccagggtt 63 |||||||||||||||||||| Sbjct: 63102 ccctattgattcccagggtt 63083
>gb|AE009912.1|AE009912 Pyrobaculum aerophilum strain IM2 section 167 of 201 of the complete genome Length = 10475 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gatgaatttggagtacttcc 45 |||||||||||||||||||| Sbjct: 1090 gatgaatttggagtacttcc 1109
>gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, complete sequence Length = 167135 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 attggtgcactcagtgagatgaat 32 |||||||||||| ||||||||||| Sbjct: 15244 attggtgcactctgtgagatgaat 15221
>gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, complete sequence Length = 166975 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 catcaatgagggaatttccccgtg 201 |||| ||||||||||||||||||| Sbjct: 33159 catccatgagggaatttccccgtg 33136
>gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complete sequence Length = 109939 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ctattgattcccagggtttc 65 |||||||||||||||||||| Sbjct: 45399 ctattgattcccagggtttc 45380
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccattgatgcttctacaatg 242 |||||||||||||||||||| Sbjct: 1934225 ccattgatgcttctacaatg 1934206
>emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, complete sequence Length = 157310 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aggcttcaacaaatacaatg 135 |||||||||||||||||||| Sbjct: 136162 aggcttcaacaaatacaatg 136181
>emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on chromosome 4, complete sequence Length = 116754 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 caaatataaaacgtcaattcctga 325 |||||||||||| ||||||||||| Sbjct: 101605 caaatataaaacctcaattcctga 101628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,214,239 Number of Sequences: 3902068 Number of extensions: 3214239 Number of successful extensions: 50842 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 50739 Number of HSP's gapped (non-prelim): 103 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)