ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465422.1| Oryza sativa (japonica cultivar-group), mRNA 168 8e-39
2dbj|AK111848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 8e-39
3ref|XM_471317.1| Oryza sativa (japonica cultivar-group), predic... 113 4e-22
4dbj|AK119369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
6dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
7emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4,... 70 5e-09
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
9dbj|AK100230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
10emb|BX324129.11| Zebrafish DNA sequence from clone CH211-221D5 i... 48 0.020
11ref|NM_101108.2| Arabidopsis thaliana KEU (KEULE); protein trans... 44 0.31
12gb|AF331066.1|AF331066 Arabidopsis thaliana KEULE mRNA, complete... 44 0.31
13gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, compl... 42 1.2
14gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resista... 40 4.9
15gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 4.9
16gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosom... 40 4.9
17emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on ch... 40 4.9
18gb|AE009912.1|AE009912 Pyrobaculum aerophilum strain IM2 section... 40 4.9
19gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, comp... 40 4.9
20gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, comple... 40 4.9
21gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complet... 40 4.9
22gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 4.9
23emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, c... 40 4.9
24emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on ch... 40 4.9 
>ref|XM_465422.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2750

 Score =  168 bits (85), Expect = 8e-39
 Identities = 194/228 (85%), Gaps = 2/228 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   agatgaatttggagtacttccctattgattcccagggtttcataactgaccctgaaaggg 84
            |||||||||||||||||||  |||||||||||||||||||||  ||||||| |||||| |
Sbjct: 876  agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935

                                                                        
Query: 85   cattggaanagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 143
            |||||||  |||||||  |||| | |||    || |||| |||| |||||||||||||||
Sbjct: 936  cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994

                                                                        
Query: 144  aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 203
            ||  ||||||||||||| ||||||||||| |||||||||||||||||||| ||  | |||
Sbjct: 995  aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054

                                                            
Query: 204  cactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251
            ||||||||  | |||||||| ||||||||||||  || ||||||||||
Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 1102
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>dbj|AK111848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148D21, full
            insert sequence
          Length = 2751

 Score =  168 bits (85), Expect = 8e-39
 Identities = 194/228 (85%), Gaps = 2/228 (0%)
 Strand = Plus / Plus

                                                                        
Query: 25   agatgaatttggagtacttccctattgattcccagggtttcataactgaccctgaaaggg 84
            |||||||||||||||||||  |||||||||||||||||||||  ||||||| |||||| |
Sbjct: 876  agatgaatttggagtactttgctattgattcccagggtttcaccactgaccatgaaagag 935

                                                                        
Query: 85   cattggaanagcttttctgtgagagtgcagaaggcttca-acaaatacaatgcttgtttg 143
            |||||||  |||||||  |||| | |||    || |||| |||| |||||||||||||||
Sbjct: 936  cattggaggagctttttagtgaaaatgcttt-ggattcacacaagtacaatgcttgtttg 994

                                                                        
Query: 144  aatgcaatggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtg 203
            ||  ||||||||||||| ||||||||||| |||||||||||||||||||| ||  | |||
Sbjct: 995  aacacaatggctactcgcatatctacagtgtttgcatcaatgagggaattccctagagtg 1054

                                                            
Query: 204  cactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251
            ||||||||  | |||||||| ||||||||||||  || ||||||||||
Sbjct: 1055 cactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 1102
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>ref|XM_471317.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1998

 Score =  113 bits (57), Expect = 4e-22
 Identities = 114/134 (85%)
 Strand = Plus / Plus

                                                                       
Query: 150 atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 209
           ||||| ||||||||  |||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 562 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 621

                                                                       
Query: 210 cgcattgccaagaccattgatgcttctacaatgacaacactaanggacatggnncccaca 269
           ||  |||||| ||| ||||||||||||||  |||||||||||   ||  |||  ||||||
Sbjct: 622 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 681

                         
Query: 270 aagattgctgctgg 283
           ||| ||||||||||
Sbjct: 682 aagcttgctgctgg 695



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 12  ggtgcactcagtgagatgaatttgga 37
           ||||||||||||||||||||| ||||
Sbjct: 424 ggtgcactcagtgagatgaatctgga 449
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>dbj|AK119369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H07, full
            insert sequence
          Length = 3904

 Score =  113 bits (57), Expect = 4e-22
 Identities = 114/134 (85%)
 Strand = Plus / Plus

                                                                        
Query: 150  atggctactcgtatatctacagtatttgcatcaatgagggaatttccccgtgtgcactac 209
            ||||| ||||||||  |||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 1490 atggccactcgtattgctacagtattcgcatcaatgagggaatttcctcgtgtgcactat 1549

                                                                        
Query: 210  cgcattgccaagaccattgatgcttctacaatgacaacactaanggacatggnncccaca 269
            ||  |||||| ||| ||||||||||||||  |||||||||||   ||  |||  ||||||
Sbjct: 1550 cgtgttgccaggacgattgatgcttctactttgacaacactacgagatttggcacccaca 1609

                          
Query: 270  aagattgctgctgg 283
            ||| ||||||||||
Sbjct: 1610 aagcttgctgctgg 1623



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 12   ggtgcactcagtgagatgaatttgga 37
            ||||||||||||||||||||| ||||
Sbjct: 1352 ggtgcactcagtgagatgaatctgga 1377
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                            
Query: 124      acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatttgcatcaa 183
                |||| |||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||
Sbjct: 15054255 acaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtttgcatcaa 15054196

                      
Query: 184      tgaggg 189
                ||||||
Sbjct: 15054195 tgaggg 15054190



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 25       agatgaatttggagtacttccctattgattcccagg 60
                |||||||||||||||||||  |||||||||||||||
Sbjct: 15055641 agatgaatttggagtactttgctattgattcccagg 15055606



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                   
Query: 201      gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251
                |||||||||||  | |||||||| ||||||||||||  || ||||||||||
Sbjct: 15052278 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 15052228
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>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0533E11
          Length = 150678

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                         
Query: 124   acaaatacaatgcttgtttgaatgcaatggctactcgtatatctacagtatttgcatcaa 183
             |||| |||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||
Sbjct: 60036 acaagtacaatgcttgtttgaacacaatggctactcgcatatctacagtgtttgcatcaa 59977

                   
Query: 184   tgaggg 189
             ||||||
Sbjct: 59976 tgaggg 59971



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 25    agatgaatttggagtacttccctattgattcccagg 60
             |||||||||||||||||||  |||||||||||||||
Sbjct: 61422 agatgaatttggagtactttgctattgattcccagg 61387



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 201   gtgcactaccgcattgccaagaccattgatgcttctacaatgacaacacta 251
             |||||||||||  | |||||||| ||||||||||||  || ||||||||||
Sbjct: 58059 gtgcactaccgtgtcgccaagacaattgatgcttctgtaacgacaacacta 58009
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>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23,
             complete sequence
          Length = 120640

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                         
Query: 188   ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 247
             ||||||||| ||||||||||| ||  |||||| ||| ||||||||||||||  |||||||
Sbjct: 97802 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 97743

                                                 
Query: 248   actaanggacatggnncccacaaagattgctgctgg 283
             ||||   ||  |||  ||||||||| ||||||||||
Sbjct: 97742 actacgagatttggcacccacaaagcttgctgctgg 97707



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 150   atggctactcgtatatctacagtatttgcatcaatgaggg 189
             ||||| ||||||||  |||||||||| |||||||||||||
Sbjct: 98763 atggccactcgtattgctacagtattcgcatcaatgaggg 98724
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                            
Query: 188      ggaatttccccgtgtgcactaccgcattgccaagaccattgatgcttctacaatgacaac 247
                ||||||||| ||||||||||| ||  |||||| ||| ||||||||||||||  |||||||
Sbjct: 10002852 ggaatttcctcgtgtgcactatcgtgttgccaggacgattgatgcttctactttgacaac 10002793

                                                    
Query: 248      actaanggacatggnncccacaaagattgctgctgg 283
                ||||   ||  |||  ||||||||| ||||||||||
Sbjct: 10002792 actacgagatttggcacccacaaagcttgctgctgg 10002757



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 150      atggctactcgtatatctacagtatttgcatcaatgaggg 189
                ||||| ||||||||  |||||||||| |||||||||||||
Sbjct: 10003813 atggccactcgtattgctacagtattcgcatcaatgaggg 10003774
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>dbj|AK100230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I19, full
           insert sequence
          Length = 2534

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 1   tacctcgtattggtgcactcagtgagatgaatttggagt 39
           |||| |||||||||||||| || ||||||||||||||||
Sbjct: 463 taccacgtattggtgcactaagagagatgaatttggagt 501
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>emb|BX324129.11| Zebrafish DNA sequence from clone CH211-221D5 in linkage group 2,
             complete sequence
          Length = 111186

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 126   aaatacaatgcttgtttgaatgca 149
             ||||||||||||||||||||||||
Sbjct: 65244 aaatacaatgcttgtttgaatgca 65221
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>ref|NM_101108.2| Arabidopsis thaliana KEU (KEULE); protein transporter AT1G12360
           (KEU) mRNA, complete cds
          Length = 2540

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctcgtattggtgcactcagtgagatgaatttggagtacttccctattgattcccagg 60
           ||||||| ||||| ||| | || ||||||||||||||||  ||  | ||||||  |||||
Sbjct: 712 tacctcggattggagcattgagagagatgaatttggagttttttgccattgatagccagg 771

                     
Query: 61  gtttcataac 70
           ||||||||||
Sbjct: 772 gtttcataac 781
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>gb|AF331066.1|AF331066 Arabidopsis thaliana KEULE mRNA, complete cds
          Length = 2001

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctcgtattggtgcactcagtgagatgaatttggagtacttccctattgattcccagg 60
           ||||||| ||||| ||| | || ||||||||||||||||  ||  | ||||||  |||||
Sbjct: 416 tacctcggattggagcattgagagagatgaatttggagttttttgccattgatagccagg 475

                     
Query: 61  gtttcataac 70
           ||||||||||
Sbjct: 476 gtttcataac 485
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>gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, complete sequence
          Length = 165586

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   ggaattatctctccaaatata 309
             |||||||||||||||||||||
Sbjct: 39769 ggaattatctctccaaatata 39749
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>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus,
             complete sequence
          Length = 282699

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaggcttcaacaaatacaat 134
             ||||||||||||||||||||
Sbjct: 80709 aaggcttcaacaaatacaat 80690



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaggcttcaacaaatacaat 134
             ||||||||||||||||||||
Sbjct: 71895 aaggcttcaacaaatacaat 71876
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    ttccccgtgtgcactaccgc 212
              ||||||||||||||||||||
Sbjct: 376632 ttccccgtgtgcactaccgc 376613
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>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete
             sequence
          Length = 155342

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   atgcttgtttgaatgcaatggcta 156
             ||||||||| ||||||||||||||
Sbjct: 64236 atgcttgttagaatgcaatggcta 64259
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>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the
             3'end of the PLCE1 gene for phospholipase C, epsilon 1
             (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820),
             the 5'end  of a novel gene (KIAA0608) and a CpG island,
             complete sequence
          Length = 153449

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    ccctattgattcccagggtt 63
             ||||||||||||||||||||
Sbjct: 63102 ccctattgattcccagggtt 63083
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>gb|AE009912.1|AE009912 Pyrobaculum aerophilum strain IM2 section 167 of 201 of the complete
            genome
          Length = 10475

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   gatgaatttggagtacttcc 45
            ||||||||||||||||||||
Sbjct: 1090 gatgaatttggagtacttcc 1109
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>gb|AC137488.2| Homo sapiens chromosome 16 clone CTD-2506I5, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     attggtgcactcagtgagatgaat 32
             |||||||||||| |||||||||||
Sbjct: 15244 attggtgcactctgtgagatgaat 15221
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>gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, complete sequence
          Length = 166975

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   catcaatgagggaatttccccgtg 201
             |||| |||||||||||||||||||
Sbjct: 33159 catccatgagggaatttccccgtg 33136
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>gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complete sequence
          Length = 109939

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    ctattgattcccagggtttc 65
             ||||||||||||||||||||
Sbjct: 45399 ctattgattcccagggtttc 45380
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     ccattgatgcttctacaatg 242
               ||||||||||||||||||||
Sbjct: 1934225 ccattgatgcttctacaatg 1934206
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>emb|BX511203.3| Rattus norvegicus chromosome 1 clone RN-79C10, complete sequence
          Length = 157310

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    aggcttcaacaaatacaatg 135
              ||||||||||||||||||||
Sbjct: 136162 aggcttcaacaaatacaatg 136181
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>emb|AL732545.10| Mouse DNA sequence from clone RP23-258D11 on chromosome 4, complete
              sequence
          Length = 116754

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 302    caaatataaaacgtcaattcctga 325
              |||||||||||| |||||||||||
Sbjct: 101605 caaatataaaacctcaattcctga 101628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,214,239
Number of Sequences: 3902068
Number of extensions: 3214239
Number of successful extensions: 50842
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50739
Number of HSP's gapped (non-prelim): 103
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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