Clone Name | basd2n21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472545.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 248 bits (125), Expect = 2e-62 Identities = 387/473 (81%), Gaps = 1/473 (0%) Strand = Plus / Plus Query: 182 tccggcgccccaatgcagcgctgccgccgctccgcgtcgctggcgctgacccgcagattg 241 |||||||| || |||| |||| |||||||||||| | ||| | ||||||||| || ||| Sbjct: 152 tccggcgcacccatgccgcgccgccgccgctccgtgccgccgccgctgaccccaaggttg 211 Query: 242 taaatggggaagatttccctcctatgaacgaccttattcgactatacaagaaagcctttc 301 | ||||||||||||||||| |||||||| ||||| |||| |||||||||||||| |||| Sbjct: 212 ttaatggggaagatttcccccctatgaaggacctacttcgtctatacaagaaagcttttc 271 Query: 302 tggatggaaacgaagatgttgttagtgacatcgagaaggcaatcactagcatggaggaag 361 | |||||||| || || | | || ||| || |||| || |||| | ||| ||| ||| Sbjct: 272 tagatggaaatgatgaggctcttggtggaattgagagtgctatcattgccattgagaaag 331 Query: 362 agagaagtaaagcagcttctcagtttgacagtatcacagctgaaataacttcagggaaga 421 | || ||||| ||||| |||||| ||| ||||| || | ||||| |||||||||||| Sbjct: 332 aaaggagtaactcagctgctcagtatgaaagtattgcaaccgaaattacttcagggaagg 391 Query: 422 ataagtttcttcgcttaaatgctgatctagagaatttccggaagcagactgaaaaggacc 481 | ||||| || || ||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 392 acaagttcctccgtataaatgctgatctggagaatttccggaagcagactgaaaaggagc 451 Query: 482 gtgcaaagtttacatcgaatatacaagtggaacttgtacagagtctgttaccttctggtt 541 |||| | |||||| || |||||||| ||||| |||| |||||||| || | ||||||| Sbjct: 452 gtgctaggtttacctcaaatatacaggtggatgttgttcagagtctattgac-tctggtt 510 Query: 542 gatagcttcgagaaaacaaatgtagaggtcacactagagactgagaaagagcagaagatt 601 ||||| || ||||| ||| |||| |||| | |||||||| |||||||||| |||| Sbjct: 511 gatagttttgagaaggtgaatcaagagatcaccccggagactgataaagagcagacgatt 570 Query: 602 agcacaagctatcaaggcatatacaagcaattagtagaaacactgaaaagctt 654 ||||||||||||||||||||||||||||| |||||||| ||| ||| |||||| Sbjct: 571 agcacaagctatcaaggcatatacaagcagttagtagagacattgagaagctt 623
>dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full insert sequence Length = 1180 Score = 240 bits (121), Expect = 5e-60 Identities = 386/473 (81%), Gaps = 1/473 (0%) Strand = Plus / Plus Query: 182 tccggcgccccaatgcagcgctgccgccgctccgcgtcgctggcgctgacccgcagattg 241 |||||||| || |||| |||| |||||||||||| | ||| | ||||||||| || ||| Sbjct: 250 tccggcgcacccatgccgcgccgccgccgctccgtgccgccgccgctgaccccaaggttg 309 Query: 242 taaatggggaagatttccctcctatgaacgaccttattcgactatacaagaaagcctttc 301 | ||||||||||||||||| |||||||| ||||| |||| |||||||||||||| || | Sbjct: 310 ttaatggggaagatttcccccctatgaaggacctacttcgtctatacaagaaagctttcc 369 Query: 302 tggatggaaacgaagatgttgttagtgacatcgagaaggcaatcactagcatggaggaag 361 | |||||||| || || | | || ||| || |||| || |||| | ||| ||| ||| Sbjct: 370 tagatggaaatgatgaggctcttggtggaattgagagtgctatcattgccattgagaaag 429 Query: 362 agagaagtaaagcagcttctcagtttgacagtatcacagctgaaataacttcagggaaga 421 | || ||||| ||||| |||||| ||| ||||| || | ||||| |||||||||||| Sbjct: 430 aaaggagtaactcagctgctcagtatgaaagtattgcaaccgaaattacttcagggaagg 489 Query: 422 ataagtttcttcgcttaaatgctgatctagagaatttccggaagcagactgaaaaggacc 481 | ||||| || || ||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 490 acaagttcctccgtataaatgctgatctggagaatttccggaagcagactgaaaaggagc 549 Query: 482 gtgcaaagtttacatcgaatatacaagtggaacttgtacagagtctgttaccttctggtt 541 |||| | |||||| || |||||||| ||||| |||| |||||||| || | ||||||| Sbjct: 550 gtgctaggtttacctcaaatatacaggtggatgttgttcagagtctattgac-tctggtt 608 Query: 542 gatagcttcgagaaaacaaatgtagaggtcacactagagactgagaaagagcagaagatt 601 ||||| || ||||| ||| |||| |||| | |||||||| |||||||||| |||| Sbjct: 609 gatagttttgagaaggtgaatcaagagatcaccccggagactgataaagagcagacgatt 668 Query: 602 agcacaagctatcaaggcatatacaagcaattagtagaaacactgaaaagctt 654 ||||||||||||||||||||||||||||| |||||||| ||| ||| |||||| Sbjct: 669 agcacaagctatcaaggcatatacaagcagttagtagagacattgagaagctt 721
>gb|AY110636.1| Zea mays CL4177_1 mRNA sequence Length = 1088 Score = 236 bits (119), Expect = 7e-59 Identities = 213/243 (87%), Gaps = 1/243 (0%) Strand = Plus / Plus Query: 403 gaaataacttcagggaagaataagtttcttcgcttaaatgctgatctagagaatttccgg 462 ||||||||||| |||||| | |||||| ||||||||||||| || || |||||||||||| Sbjct: 391 gaaataacttctgggaaggaaaagtttattcgcttaaatgccgacctggagaatttccgg 450 Query: 463 aagcagactgaaaaggaccgtgcaaagtttacatcgaatatacaagtggaacttgtacag 522 || |||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||| Sbjct: 451 aaacagactgaaaaggaccgtgcaaagttaacatcaaatatacgggtggaagttgttcag 510 Query: 523 agtctgttaccttctggttgatagcttcgagaaaacaaatgtagaggtcacactagagac 582 ||||||||||| ||| |||||||| || ||||||| |||| ||||| ||| | |||||| Sbjct: 511 agtctgttacc-tctagttgatagttttgagaaaataaatctagagaacaccccagagac 569 Query: 583 tgagaaagagcagaagattagcacaagctatcaaggcatatacaagcaattagtagaaac 642 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||| Sbjct: 570 tgagaaggagcaaaagatcagcgcaagctatcaaggcatatacaagcagttagttgaaac 629 Query: 643 act 645 ||| Sbjct: 630 act 632 Score = 44.1 bits (22), Expect = 0.57 Identities = 61/74 (82%) Strand = Plus / Plus Query: 229 gacccgcagattgtaaatggggaagatttccctcctatgaacgaccttattcgactatac 288 |||||| || |||| || ||||||||||| ||||| ||||| ||||| |||| |||||| Sbjct: 217 gacccgaaggttgtcaacggggaagattttcctcccatgaaggacctaattcagctatac 276 Query: 289 aagaaagcctttct 302 | || ||| ||||| Sbjct: 277 aggacagcttttct 290
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 224 bits (113), Expect = 3e-55 Identities = 345/421 (81%), Gaps = 1/421 (0%) Strand = Plus / Minus Query: 234 gcagattgtaaatggggaagatttccctcctatgaacgaccttattcgactatacaagaa 293 |||| |||| ||||||||||||||||| |||||||| ||||| |||| ||||||||||| Sbjct: 36545 gcaggttgttaatggggaagatttcccccctatgaaggacctacttcgtctatacaagaa 36486 Query: 294 agcctttctggatggaaacgaagatgttgttagtgacatcgagaaggcaatcactagcat 353 ||| ||||| |||||||| || || | | || ||| || |||| || |||| | ||| Sbjct: 36485 agcttttctagatggaaatgatgaggctcttggtggaattgagagtgctatcattgccat 36426 Query: 354 ggaggaagagagaagtaaagcagcttctcagtttgacagtatcacagctgaaataacttc 413 ||| |||| || ||||| ||||| |||||| ||| ||||| || | ||||| ||||| Sbjct: 36425 tgagaaagaaaggagtaactcagctgctcagtatgaaagtattgcaaccgaaattacttc 36366 Query: 414 agggaagaataagtttcttcgcttaaatgctgatctagagaatttccggaagcagactga 473 ||||||| | ||||| || || ||||||||||||| ||||||||||||||||||||||| Sbjct: 36365 agggaaggacaagttcctccgtataaatgctgatctggagaatttccggaagcagactga 36306 Query: 474 aaaggaccgtgcaaagtttacatcgaatatacaagtggaacttgtacagagtctgttacc 533 |||||| ||||| | |||||| || |||||||| ||||| |||| |||||||| || | Sbjct: 36305 aaaggagcgtgctaggtttacctcaaatatacaggtggatgttgttcagagtctattgac 36246 Query: 534 ttctggttgatagcttcgagaaaacaaatgtagaggtcacactagagactgagaaagagc 593 |||||||||||| || ||||| ||| |||| |||| | |||||||| ||||||| Sbjct: 36245 -tctggttgatagttttgagaaggtgaatcaagagatcaccccggagactgataaagagc 36187 Query: 594 agaagattagcacaagctatcaaggcatatacaagcaattagtagaaacactgaaaagct 653 ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||| Sbjct: 36186 agacgattagcacaagctatcaaggcatatacaagcagttagtagagacattgagaagct 36127 Query: 654 t 654 | Sbjct: 36126 t 36126 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 182 tccggcgccccaatgcagcgctgccgccgctccgcgtcgctggcgctgaccc 233 |||||||| || |||| |||| |||||||||||| | ||| | ||||||||| Sbjct: 37385 tccggcgcacccatgccgcgccgccgccgctccgtgccgccgccgctgaccc 37334
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 224 bits (113), Expect = 3e-55 Identities = 345/421 (81%), Gaps = 1/421 (0%) Strand = Plus / Minus Query: 234 gcagattgtaaatggggaagatttccctcctatgaacgaccttattcgactatacaagaa 293 |||| |||| ||||||||||||||||| |||||||| ||||| |||| ||||||||||| Sbjct: 21386795 gcaggttgttaatggggaagatttcccccctatgaaggacctacttcgtctatacaagaa 21386736 Query: 294 agcctttctggatggaaacgaagatgttgttagtgacatcgagaaggcaatcactagcat 353 ||| ||||| |||||||| || || | | || ||| || |||| || |||| | ||| Sbjct: 21386735 agcttttctagatggaaatgatgaggctcttggtggaattgagagtgctatcattgccat 21386676 Query: 354 ggaggaagagagaagtaaagcagcttctcagtttgacagtatcacagctgaaataacttc 413 ||| |||| || ||||| ||||| |||||| ||| ||||| || | ||||| ||||| Sbjct: 21386675 tgagaaagaaaggagtaactcagctgctcagtatgaaagtattgcaaccgaaattacttc 21386616 Query: 414 agggaagaataagtttcttcgcttaaatgctgatctagagaatttccggaagcagactga 473 ||||||| | ||||| || || ||||||||||||| ||||||||||||||||||||||| Sbjct: 21386615 agggaaggacaagttcctccgtataaatgctgatctggagaatttccggaagcagactga 21386556 Query: 474 aaaggaccgtgcaaagtttacatcgaatatacaagtggaacttgtacagagtctgttacc 533 |||||| ||||| | |||||| || |||||||| ||||| |||| |||||||| || | Sbjct: 21386555 aaaggagcgtgctaggtttacctcaaatatacaggtggatgttgttcagagtctattgac 21386496 Query: 534 ttctggttgatagcttcgagaaaacaaatgtagaggtcacactagagactgagaaagagc 593 |||||||||||| || ||||| ||| |||| |||| | |||||||| ||||||| Sbjct: 21386495 -tctggttgatagttttgagaaggtgaatcaagagatcaccccggagactgataaagagc 21386437 Query: 594 agaagattagcacaagctatcaaggcatatacaagcaattagtagaaacactgaaaagct 653 ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||| Sbjct: 21386436 agacgattagcacaagctatcaaggcatatacaagcagttagtagagacattgagaagct 21386377 Query: 654 t 654 | Sbjct: 21386376 t 21386376 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 182 tccggcgccccaatgcagcgctgccgccgctccgcgtcgctggcgctgaccc 233 |||||||| || |||| |||| |||||||||||| | ||| | ||||||||| Sbjct: 21387635 tccggcgcacccatgccgcgccgccgccgctccgtgccgccgccgctgaccc 21387584
>gb|BC072660.1| Mus musculus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, mRNA (cDNA clone MGC:100028 IMAGE:30360302), complete cds Length = 3379 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgct 222 |||||||||||||||||||||||||| Sbjct: 227 cagcgctgccgccgctccgcgtcgct 202
>ref|NM_025877.3| Mus musculus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 (Slc25a23), mRNA Length = 3384 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgct 222 |||||||||||||||||||||||||| Sbjct: 231 cagcgctgccgccgctccgcgtcgct 206
>emb|CT571247.13| Mouse DNA sequence from clone RP24-116C19 on chromosome 17, complete sequence Length = 137161 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 197 cagcgctgccgccgctccgcgtcgct 222 |||||||||||||||||||||||||| Sbjct: 77999 cagcgctgccgccgctccgcgtcgct 78024
>ref|NM_024103.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 (SLC25A23), mRNA Length = 3475 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 183 cagcgctgccgccgctccgcgtcgc 159
>ref|XM_542138.2| PREDICTED: Canis familiaris similar to solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, transcript variant 1 (LOC485020), mRNA Length = 1508 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 142 cagcgctgccgccgctccgcgtcgc 118
>ref|XM_863299.1| PREDICTED: Canis familiaris similar to solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, transcript variant 3 (LOC485020), mRNA Length = 1562 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 142 cagcgctgccgccgctccgcgtcgc 118
>ref|XM_863292.1| PREDICTED: Canis familiaris similar to solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, transcript variant 2 (LOC485020), mRNA Length = 1349 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 142 cagcgctgccgccgctccgcgtcgc 118
>gb|BC001656.1| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, mRNA (cDNA clone MGC:2615 IMAGE:3356718), complete cds Length = 2089 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 164 cagcgctgccgccgctccgcgtcgc 140
>emb|AJ619988.1| Homo sapiens mRNA for small calcium-binding mitochondrial carrier 3 (SCAMC-3 gene) Length = 1594 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 148 cagcgctgccgccgctccgcgtcgc 124
>emb|AJ619962.1| Homo sapiens partial mRNA for mitochondrial ATP-Mg/Pi carrier isoform 2, (SLC25A23 gene) Length = 3430 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 138 cagcgctgccgccgctccgcgtcgc 114
>emb|AJ512835.1|HSA512835 Homo sapiens mRNA for putative calcium binding transporter (ORF1) Length = 1430 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 148 cagcgctgccgccgctccgcgtcgc 124
>gb|AC010503.8| Homo sapiens chromosome 19 clone CTD-2396E7, complete sequence Length = 141295 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 23278 cagcgctgccgccgctccgcgtcgc 23302
>ref|XM_217310.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310067G05 (LOC301113), mRNA Length = 1451 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 65 cagcgctgccgccgctccgcgtcgc 41
>emb|AJ324213.1|HSA324213 Homo sapiens genomic sequence surrounding NotI site, clone NR1-XI24C Length = 635 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 148 cagcgctgccgccgctccgcgtcgc 124
>gb|AY750170.1| Homo sapiens mitochondrial Ca2+-dependent solute carrier protein 2 (SLC25A23) mRNA, complete cds; nuclear gene for mitochondrial product Length = 3425 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 197 cagcgctgccgccgctccgcgtcgc 221 ||||||||||||||||||||||||| Sbjct: 148 cagcgctgccgccgctccgcgtcgc 124
>ref|XM_539776.2| PREDICTED: Canis familiaris similar to dachsous 2 isoform 1 (LOC482659), mRNA Length = 6969 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 212 tccgcgtcgctggcgctgacccgcag 237 ||||||||| |||||||||||||||| Sbjct: 1631 tccgcgtcggtggcgctgacccgcag 1606
>gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, complete sequence Length = 210979 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gaagagagaagtaaagcagct 378 ||||||||||||||||||||| Sbjct: 83024 gaagagagaagtaaagcagct 83004
>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence Length = 130895 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 tagtagaaacactgaaaagct 653 ||||||||||||||||||||| Sbjct: 101641 tagtagaaacactgaaaagct 101661
>emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chromosome 13 Contains the 3' end of the DIAPH3 gene for diaphanous homolog 3 (Drosophila), complete sequence Length = 154212 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 aataacttcagggaagaataa 425 ||||||||||||||||||||| Sbjct: 114477 aataacttcagggaagaataa 114457
>emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chromosome X Contains part of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85), complete sequence Length = 190325 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 ctgaaataacttcagggaagaata 424 ||||||||||||||||| |||||| Sbjct: 44285 ctgaaataacttcaggggagaata 44308
>emb|AL451080.11| Human DNA sequence from clone RP11-323B13 on chromosome 6 Contains the 3' end of a novel gene (FLJ20342), complete sequence Length = 56725 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgacccgcagattgtaaatg 247 |||||||||||||||||||| Sbjct: 27275 tgacccgcagattgtaaatg 27294
>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence Length = 252632 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 gcatatacaagcaattagta 637 |||||||||||||||||||| Sbjct: 141335 gcatatacaagcaattagta 141316
>emb|AJ301654.1|ECH301654 Erwinia chrysanthemi ATPase operon (sufABCDSE genes) Length = 6866 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cgcgtcgctggcgctgaccc 233 |||||||||||||||||||| Sbjct: 6615 cgcgtcgctggcgctgaccc 6634
>gb|AC090009.9| Homo sapiens 12 BAC RP11-724J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 53631 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gaaataacttcagggaagaataag 426 ||||||||||||||||| |||||| Sbjct: 27377 gaaataacttcagggaaaaataag 27400
>gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115294 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 agagagaagtaaagcagctt 379 |||||||||||||||||||| Sbjct: 42158 agagagaagtaaagcagctt 42177
>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168186 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 caatcactagcatggaggaagaga 364 |||||||||||| ||||||||||| Sbjct: 42358 caatcactagcaaggaggaagaga 42335
>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence Length = 112032 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 agagtctgttaccttctggt 540 |||||||||||||||||||| Sbjct: 86329 agagtctgttaccttctggt 86348
>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence Length = 168539 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 agagtctgttaccttctggt 540 |||||||||||||||||||| Sbjct: 129206 agagtctgttaccttctggt 129187
>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence Length = 202543 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 577 agagactgagaaagagcagaagattagcacaa 608 ||||| |||||| |||||||||||||| |||| Sbjct: 189324 agagaatgagaaggagcagaagattagaacaa 189293
>gb|AC097455.3| Homo sapiens BAC clone RP11-2J13 from 4, complete sequence Length = 147327 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 554 aaaacaaatgtagaggtcacactagagactga 585 ||||||||||||||||| || |||||||||| Sbjct: 73708 aaaacaaatgtagaggtttcattagagactga 73739
>gb|AC130371.4| Homo sapiens chromosome 17, clone RP11-1197K16, complete sequence Length = 195613 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 gccaacccccgtccttcctc 177 |||||||||||||||||||| Sbjct: 92359 gccaacccccgtccttcctc 92378
>gb|AC127518.8| Homo sapiens chromosome 17, clone RP13-629P20, complete sequence Length = 166080 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 gccaacccccgtccttcctc 177 |||||||||||||||||||| Sbjct: 82163 gccaacccccgtccttcctc 82182
>emb|AL953894.5| Zebrafish DNA sequence from clone CH211-212B13 in linkage group 18, complete sequence Length = 222376 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 gaagattagcacaagctatcaagg 618 ||||||||||||||||| |||||| Sbjct: 157658 gaagattagcacaagctttcaagg 157635
>emb|AL845477.8| Mouse DNA sequence from clone RP23-206J10 on chromosome 2, complete sequence Length = 103901 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 caagtggaacttgtacagagtctg 528 ||||||||||||||| |||||||| Sbjct: 49006 caagtggaacttgtaaagagtctg 48983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,286,037 Number of Sequences: 3902068 Number of extensions: 5286037 Number of successful extensions: 105798 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105683 Number of HSP's gapped (non-prelim): 114 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)