Clone Name
basd3c19
Clone Library Name
barley_pub
>dbj| AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 157 bits (79), Expect = 5e-35
Identities = 184/219 (84%)
Strand = Plus / Minus
Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
|||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 35855771 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 35855712
Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
|||||| | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 35855711 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 35855652
Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
|||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || ||
Sbjct: 35855651 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 35855592
Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333
||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 35855591 ggctcaggttgctagaatggctgctcgggcaccacagta 35855553
>dbj| AP005290.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 157 bits (79), Expect = 5e-35
Identities = 184/219 (84%)
Strand = Plus / Minus
Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
|||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 46317 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 46258
Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
|||||| | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 46257 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 46198
Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
|||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || ||
Sbjct: 46197 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 46138
Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333
||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 46137 ggctcaggttgctagaatggctgctcgggcaccacagta 46099
>dbj| AK102994.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
insert sequence
Length = 1547
Score = 157 bits (79), Expect = 5e-35
Identities = 184/219 (84%)
Strand = Plus / Plus
Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
|||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 1074 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1133
Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
|||||| | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 1134 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1193
Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
|||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || ||
Sbjct: 1194 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1253
Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333
||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 1254 ggctcaggttgctagaatggctgctcgggcaccacagta 1292
>dbj| AK069209.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
insert sequence
Length = 1562
Score = 157 bits (79), Expect = 5e-35
Identities = 184/219 (84%)
Strand = Plus / Plus
Query: 115 gcagatgcttgagtgcacagctactgatttggcgcttgaggacaccatctacgcgctcga 174
|||||||||||||||||| ||| | |||||||| || ||||||||||| || ||||| ||
Sbjct: 1089 gcagatgcttgagtgcactgctgcggatttggcactcgaggacaccatttatgcgcttga 1148
Query: 175 caaggctgtccaggaaggatcggtgcccttcgacggctacctcaggagcgtgcgtgcact 234
|||||| | ||||| || || ||||| || || |||||||||||||||||||| || ||
Sbjct: 1149 caaggccattcaggagggttctgtgccatttgatggctacctcaggagcgtgcgagcgct 1208
Query: 235 cgcacgggagcagttcttccagcgtgtcctctgcaccaaggtcaacaatgcacagcagca 294
|||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| || ||
Sbjct: 1209 tgcacgggagcagtttttccaacgcgtcctgtcaaccaaggtgaacaaggcacaacaaca 1268
Query: 295 ggcgcaggttgctaggatggcctcacgggcaccacagta 333
||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 1269 ggctcaggttgctagaatggctgctcgggcaccacagta 1307
>emb| AL080273.10 |HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains
STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690
and a gt repeat polymorphism, complete sequence
Length = 48084
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 280 caatgcacagcagcaggcgca 300
|||||||||||||||||||||
Sbjct: 15086 caatgcacagcagcaggcgca 15106
>gb| AC012301.5 |AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence
Length = 211466
Score = 42.1 bits (21), Expect = 1.8
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 416 agtgtaaagttggttcccatt 436
|||||||||||||||||||||
Sbjct: 62309 agtgtaaagttggttcccatt 62329
>ref| XM_454508.1 | Kluyveromyces lactis NRRL Y-1140, KLLA0E12419g predicted mRNA
Length = 897
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 ctggtgacgacactgccgag 76
||||||||||||||||||||
Sbjct: 263 ctggtgacgacactgccgag 282
>ref| XM_384504.1 | Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1)
partial mRNA
Length = 3987
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 463 aagaactctattagctgggg 482
||||||||||||||||||||
Sbjct: 1351 aagaactctattagctgggg 1370
>emb| CR382125.1 | Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
of Kluyveromyces lactis
Length = 2234072
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 ctggtgacgacactgccgag 76
||||||||||||||||||||
Sbjct: 1096090 ctggtgacgacactgccgag 1096109
>gb| CP000183.1 | Drosophila melanogaster genomic scaffold 211000022280458
Length = 100390
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 285 cacagcagcaggcgcaggtt 304
||||||||||||||||||||
Sbjct: 52663 cacagcagcaggcgcaggtt 52682
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 285 cacagcagcaggcgcaggtt 304
||||||||||||||||||||
Sbjct: 50667 cacagcagcaggcgcaggtt 50686
>dbj| AP005272.2 | Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
sequence
Length = 164943
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 tgtaaagttggttcccattg 437
||||||||||||||||||||
Sbjct: 148233 tgtaaagttggttcccattg 148214
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,630,940
Number of Sequences: 3902068
Number of extensions: 3630940
Number of successful extensions: 66647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66629
Number of HSP's gapped (non-prelim): 18
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)