ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2n17 |
|---|---|
| Clone Library Name | barley_pub |
>RL24_HORVU (P50888) 60S ribosomal protein L24| Length = 162 Score = 102 bits (254), Expect(2) = 5e-23 Identities = 57/89 (64%), Positives = 57/89 (64%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALXXXXXX 217 KQHKKDIHAEAA PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL Sbjct: 59 KQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 118 Query: 218 XXXXXXXXXXXXXXXXXSQKSQGGKGAVQ 304 SQKSQGGKGAVQ Sbjct: 119 IKKTKDEKKAKKAEVTKSQKSQGGKGAVQ 147 Score = 24.6 bits (52), Expect(2) = 5e-23 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +1 Query: 10 RLCWTAMYR 36 +LCWTAMYR Sbjct: 50 KLCWTAMYR 58
>RL24_PRUAV (Q9FUL4) 60S ribosomal protein L24| Length = 186 Score = 82.0 bits (201), Expect(2) = 6e-16 Identities = 48/88 (54%), Positives = 51/88 (57%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALXXXXXX 217 KQHKKDI EA PYSRSIVGATLEVIQK+R EKPEVRDAAREAAL Sbjct: 59 KQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118 Query: 218 XXXXXXXXXXXXXXXXXSQKSQGGKGAV 301 SQKSQ GKG++ Sbjct: 119 IKKTKDEKKAKKAEVTKSQKSQ-GKGSI 145 Score = 21.2 bits (43), Expect(2) = 6e-16 Identities = 7/10 (70%), Positives = 9/10 (90%) Frame = +1 Query: 7 TRLCWTAMYR 36 ++L WTAMYR Sbjct: 49 SKLTWTAMYR 58
>RL24_ARATH (P38666) 60S ribosomal protein L24| Length = 163 Score = 77.8 bits (190), Expect = 2e-14 Identities = 41/54 (75%), Positives = 41/54 (75%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 KQHKKD EA PYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL Sbjct: 59 KQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112
>RL24_CICAR (O65743) 60S ribosomal protein L24| Length = 164 Score = 77.8 bits (190), Expect = 2e-14 Identities = 45/89 (50%), Positives = 46/89 (51%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALXXXXXX 217 KQHKKD EA PYSRSIVGATLEVIQKKR EKPEVRDAAREAAL Sbjct: 59 KQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKER 118 Query: 218 XXXXXXXXXXXXXXXXXSQKSQGGKGAVQ 304 + GKG VQ Sbjct: 119 IKKTKDEKKAKKAEVASKAQKSQGKGNVQ 147
>RL24B_SCHPO (O74884) 60S ribosomal protein L24-B| Length = 149 Score = 45.1 bits (105), Expect(2) = 6e-05 Identities = 26/54 (48%), Positives = 33/54 (61%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 + HKK I E A + R IVGA L+VI++KR ++PEVR AAR AAL Sbjct: 57 RMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109 Score = 20.8 bits (42), Expect(2) = 6e-05 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = +1 Query: 10 RLCWTAMYRXAAQEG 54 RL WT +YR ++G Sbjct: 48 RLSWTVLYRRMHKKG 62
>RL24A_SCHPO (Q92354) 60S ribosomal protein L24-A| Length = 149 Score = 45.1 bits (105), Expect(2) = 6e-05 Identities = 26/54 (48%), Positives = 33/54 (61%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 + HKK I E A + R IVGA L+VI++KR ++PEVR AAR AAL Sbjct: 57 RMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109 Score = 20.8 bits (42), Expect(2) = 6e-05 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = +1 Query: 10 RLCWTAMYRXAAQEG 54 RL WT +YR ++G Sbjct: 48 RLSWTVLYRRMHKKG 62
>RL24_NEUCR (Q7SDU2) 60S ribosomal protein L24| Length = 156 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALXXXXXX 217 +QHKK I E A R+IVGA+LEVI+++R+ +PE R AAR AA+ Sbjct: 57 RQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAK 115 Query: 218 XXXXXXXXXXXXXXXXXSQKS-----QGGKGA 298 + K+ QG KGA Sbjct: 116 KQETQAAKKAEKAKNAANPKARVTSKQGAKGA 147
>RL24_DEBHA (Q6BNC2) 60S ribosomal protein L24| Length = 156 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/54 (42%), Positives = 34/54 (62%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 +QHKK I E+A R+IVGA+LE+I+++R++KP R AAR+ L Sbjct: 57 RQHKKGISEESAKRRTRKTVKN-QRAIVGASLELIKERRSQKPSDRKAARDVKL 109
>RL24_CANGA (Q6FXY9) 60S ribosomal protein L24| Length = 155 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAARE 190 + HKK I E A R+IVGA+LE+I+++R+ KPEVR A R+ Sbjct: 57 RHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRD 106
>RL24A_YEAST (P04449) 60S ribosomal protein L24-A (L30A) (RP29) (YL21)| Length = 155 Score = 39.3 bits (90), Expect = 0.008 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALXXXXXX 217 K HKK I E A R I GA+L++I+++R+ KPEVR A RE L Sbjct: 57 KHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115 Query: 218 XXXXXXXXXXXXXXXXXSQKS----QGGKGAVQ 304 +Q S Q KGA Q Sbjct: 116 KKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQ 148
>RL24_KLULA (P38665) 60S ribosomal protein L24 (Ribosomal protein L30)| Length = 155 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAARE 190 + HKK I E A R++VGA+LE+I+++R+ KPEVR A R+ Sbjct: 57 RHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRD 106
>RL24_ASHGO (Q752U6) 60S ribosomal protein L24| Length = 155 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/51 (39%), Positives = 31/51 (60%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAARE 190 + HKK I E A R++VGA+LE+I+++R+ KPE+R A R+ Sbjct: 57 RHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRD 106
>RL24B_YEAST (P24000) 60S ribosomal protein L24-B (L30B) (RP29) (YL21)| Length = 155 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 K HKK I E A R I GA+L++I+++R+ KPEVR A RE L Sbjct: 57 KHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKL 109
>RL24_PAGMA (Q6Y263) 60S ribosomal protein L24| Length = 157 Score = 38.1 bits (87), Expect = 0.018 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109
>RL24_GILMI (Q9DFQ7) 60S ribosomal protein L24| Length = 157 Score = 38.1 bits (87), Expect = 0.018 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109
>RL24_DROME (Q9VJY6) 60S ribosomal protein L24| Length = 155 Score = 38.1 bits (87), Expect = 0.018 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++H+K I EA+ + R+IVGA+L I KR KPEVR A R+ A+ Sbjct: 57 RKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAI 109
>RL24_PLUXY (Q6F444) 60S ribosomal protein L24| Length = 155 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/32 (59%), Positives = 22/32 (68%) Frame = +2 Query: 104 YSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 Y R+IVGA+L I KR KPEVR A RE A+ Sbjct: 78 YQRAIVGASLSDIMAKRNMKPEVRKAQREQAI 109
>RL24_ICTPU (Q90YU3) 60S ribosomal protein L24| Length = 157 Score = 37.4 bits (85), Expect = 0.031 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAI 109
>RL24_BRARE (Q8JGR4) 60S ribosomal protein L24| Length = 157 Score = 37.4 bits (85), Expect = 0.031 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAI 109
>RL24_RAT (P83732) 60S ribosomal protein L24 (L30)| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_MOUSE (Q8BP67) 60S ribosomal protein L24| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_MACFA (P61122) 60S ribosomal protein L24| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_HUMAN (P83731) 60S ribosomal protein L24 (Ribosomal protein L30)| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_FELCA (Q66WF5) 60S ribosomal protein L24 (Ribosomal protein L30)| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_BOVIN (Q862I1) 60S ribosomal protein L24 (Ribosomal protein L30)| Length = 157 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/54 (38%), Positives = 29/54 (53%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK +E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109
>RL24_BRABE (Q8ISQ3) 60S ribosomal protein L24| Length = 154 Score = 36.6 bits (83), Expect = 0.052 Identities = 21/54 (38%), Positives = 28/54 (51%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 ++HKK E + R+I GA+L I KR +KPEVR A RE A+ Sbjct: 57 RKHKKG-QQEEIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAV 109
>RL24_YARLI (Q6C4U6) 60S ribosomal protein L24| Length = 155 Score = 36.2 bits (82), Expect = 0.068 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +2 Query: 38 KQHKKDIHAEAAXXXXXXXXXPYSRSIVGATLEVIQKKRAEKPEVRDAAR 187 ++HKK I E + R IVGA+L+VI++KR +PE R+A R Sbjct: 57 RKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEKRNARPETRNATR 105
>RL24_SPOFR (Q962T5) 60S ribosomal protein L24| Length = 155 Score = 36.2 bits (82), Expect = 0.068 Identities = 18/32 (56%), Positives = 22/32 (68%) Frame = +2 Query: 104 YSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 Y R+IVGA+L I KR KPEVR A R+ A+ Sbjct: 78 YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAI 109
>RL24_SCHJA (Q7Z0T8) 60S ribosomal protein L24| Length = 156 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +2 Query: 107 SRSIVGATLEVIQKKRAEKPEVRDAAREAAL 199 +R I GA+L I KR +KPEVR A R+ A+ Sbjct: 79 ARGIAGASLAEIMAKRNQKPEVRKAMRDQAI 109
>DPP9_HUMAN (Q86TI2) Dipeptidyl peptidase 9 (EC 3.4.14.5) (Dipeptidyl peptidase| IX) (DP9) (Dipeptidyl peptidase-like protein 9) (DPLP9) (Dipeptidyl peptidase IV-related protein 2) (DPRP-2) Length = 863 Score = 30.8 bits (68), Expect = 2.9 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = -2 Query: 200 EERLLWQHHGLQ--ASQPSSSG*LP-VWHQQSTVSTASWWCGASSWQPQHGCPSCAAXLY 30 E RL + H GL P S+G V ++ T WWC +SW+ G + LY Sbjct: 219 ERRLTFCHQGLSNVLDDPKSAGVATFVIQEEFDRFTGYWWCPTASWEGSEGLKT-LRILY 277 Query: 29 IAVQQSLV 6 V +S V Sbjct: 278 EEVDESEV 285 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,206,694 Number of Sequences: 219361 Number of extensions: 1054307 Number of successful extensions: 2869 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2860 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
