ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2n16 |
|---|---|
| Clone Library Name | barley_pub |
>TIPT_DROME (Q9U3V5) Protein tiptop| Length = 1024 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +1 Query: 178 HGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHPP 345 H +S+ ASRD S + R+ SS++P + PH++PD P PP Sbjct: 704 HLLRSSFASRDRSASESSSASRVESSYTPDRQ--------QATPHKSPDTPAPPPP 751
>SILE_SALTY (Q9Z4N3) Silver-binding protein silE precursor| Length = 143 Score = 32.0 bits (71), Expect = 0.76 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = -1 Query: 182 PCGLAATQQRAPVLTNLPNHEQILLAYFCLTNKAYSQRR*LVISKSRDRERQIVSPAVP 6 P G+ T AP + + HEQ ++A+ +TN + + +V S R Q VSP P Sbjct: 46 PVGIQGT---APRMAGMDQHEQAIIAHETMTNGSADAHQKMVESHQRMMGSQTVSPTGP 101
>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 706 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/49 (40%), Positives = 22/49 (44%) Frame = +1 Query: 196 PASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342 P RD S D PR R + PP RG Y S P R P+ P D P Sbjct: 389 PRDRDRSRDSRPPRERDSRDRRPP-RG---RYDSFERPERRPEGPRDGP 433
>P2RY2_MOUSE (P35383) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP| receptor) (Purinergic receptor) Length = 373 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 279 PSPRRRREARIHPPTRLCRIHGXVSASRIRLCPMWPSGHAAKSARL 142 PSP+ RR+ +H P R R VS+ R P+G K RL Sbjct: 328 PSPQARRKLGLHRPNRTVRKDLSVSSDDSRRTESTPAGSETKDIRL 373
>LIME1_MOUSE (Q9EQR5) Lck-interacting transmembrane adapter 1 (Lck-interacting| molecule) Length = 269 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +1 Query: 181 GTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342 G +S+ A R SMD PRW S S S+ + + LP P AP P Sbjct: 76 GPRSSIAPRPASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAPPAAPATAP 129
>AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 550 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138 PSD +M GGE ++I + G + + Q +L+G+D+ + + P Sbjct: 88 PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 147 Query: 137 NLPNHEQILLAYFCLTN 87 L H +A F L+N Sbjct: 148 LLDAHMNAKIADFGLSN 164
>AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 550 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138 PSD +M GGE ++I + G + + Q +L+G+D+ + + P Sbjct: 88 PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 147 Query: 137 NLPNHEQILLAYFCLTN 87 L H +A F L+N Sbjct: 148 LLDAHMNAKIADFGLSN 164
>AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138 PSD +M GGE ++I + G + + Q +L+G+D+ + + P Sbjct: 86 PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 145 Query: 137 NLPNHEQILLAYFCLTN 87 L H +A F L+N Sbjct: 146 LLDAHMNAKIADFGLSN 162
>AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -1 Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138 PSD +M GGE ++I + G + + Q +L+G+D+ + + P Sbjct: 86 PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 145 Query: 137 NLPNHEQILLAYFCLTN 87 L H +A F L+N Sbjct: 146 LLDAHMNAKIADFGLSN 162
>VSI2_REOVL (P11314) Sigma-2 protein (Core protein)| Length = 418 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/64 (26%), Positives = 26/64 (40%) Frame = +1 Query: 118 CS*LGKLVKTGALCCVAARPHGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSS 297 C+ G + L C + H + P +R + PT P W M+ + S C+ S Sbjct: 241 CNRRGDAAEVWILSC--SLNHSAQIRPGNRSLFVMPTSPDWNMDVNLILSSTLTGCLCSG 298 Query: 298 DGLP 309 LP Sbjct: 299 SQLP 302
>VSI2_REOVD (P03525) Sigma 2 protein (Core protein)| Length = 418 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/64 (26%), Positives = 26/64 (40%) Frame = +1 Query: 118 CS*LGKLVKTGALCCVAARPHGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSS 297 C+ G + L C + H + P +R + PT P W M+ + S C+ S Sbjct: 241 CNRRGDAAEVWILSC--SLNHSAQIRPGNRSLFVMPTSPDWNMDVNLILSSTLTGCLCSG 298 Query: 298 DGLP 309 LP Sbjct: 299 SQLP 302
>GVPH_HALME (Q02233) Protein gvpH| Length = 216 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +1 Query: 190 SNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342 + P D S P EP +S S + D P++TPD P DHP Sbjct: 6 NGPGGSDDSDRPDEPD---DSDRPDESNSTGNPDTPDDRPNKTPDRPSDHP 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,492,036 Number of Sequences: 219361 Number of extensions: 1181018 Number of successful extensions: 2731 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2730 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
