ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIPT_DROME (Q9U3V5) Protein tiptop 33 0.45
2SILE_SALTY (Q9Z4N3) Silver-binding protein silE precursor 32 0.76
3BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7... 31 1.3
4P2RY2_MOUSE (P35383) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor... 31 1.3
5LIME1_MOUSE (Q9EQR5) Lck-interacting transmembrane adapter 1 (Lc... 30 2.9
6AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic s... 29 6.4
7AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic s... 29 6.4
8AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic sub... 29 6.4
9AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic s... 29 6.4
10VSI2_REOVL (P11314) Sigma-2 protein (Core protein) 28 8.4
11VSI2_REOVD (P03525) Sigma 2 protein (Core protein) 28 8.4
12GVPH_HALME (Q02233) Protein gvpH 28 8.4

>TIPT_DROME (Q9U3V5) Protein tiptop|
          Length = 1024

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 178 HGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHPP 345
           H  +S+ ASRD S   +    R+ SS++P  +           PH++PD P   PP
Sbjct: 704 HLLRSSFASRDRSASESSSASRVESSYTPDRQ--------QATPHKSPDTPAPPPP 751



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>SILE_SALTY (Q9Z4N3) Silver-binding protein silE precursor|
          Length = 143

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 182 PCGLAATQQRAPVLTNLPNHEQILLAYFCLTNKAYSQRR*LVISKSRDRERQIVSPAVP 6
           P G+  T   AP +  +  HEQ ++A+  +TN +    + +V S  R    Q VSP  P
Sbjct: 46  PVGIQGT---APRMAGMDQHEQAIIAHETMTNGSADAHQKMVESHQRMMGSQTVSPTGP 101



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>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 706

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = +1

Query: 196 PASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342
           P  RD S D   PR R +    PP RG    Y S   P R P+ P D P
Sbjct: 389 PRDRDRSRDSRPPRERDSRDRRPP-RG---RYDSFERPERRPEGPRDGP 433



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>P2RY2_MOUSE (P35383) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP|
           receptor) (Purinergic receptor)
          Length = 373

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 279 PSPRRRREARIHPPTRLCRIHGXVSASRIRLCPMWPSGHAAKSARL 142
           PSP+ RR+  +H P R  R    VS+   R     P+G   K  RL
Sbjct: 328 PSPQARRKLGLHRPNRTVRKDLSVSSDDSRRTESTPAGSETKDIRL 373



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>LIME1_MOUSE (Q9EQR5) Lck-interacting transmembrane adapter 1 (Lck-interacting|
           molecule)
          Length = 269

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 181 GTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342
           G +S+ A R  SMD   PRW   S  S  S+  +  +    LP   P AP   P
Sbjct: 76  GPRSSIAPRPASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAPPAAPATAP 129



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>AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 550

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -1

Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138
           PSD +M      GGE  ++I + G +       + Q +L+G+D+    +   +   P   
Sbjct: 88  PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 147

Query: 137 NLPNHEQILLAYFCLTN 87
            L  H    +A F L+N
Sbjct: 148 LLDAHMNAKIADFGLSN 164



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>AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 550

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -1

Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138
           PSD +M      GGE  ++I + G +       + Q +L+G+D+    +   +   P   
Sbjct: 88  PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 147

Query: 137 NLPNHEQILLAYFCLTN 87
            L  H    +A F L+N
Sbjct: 148 LLDAHMNAKIADFGLSN 164



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>AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 548

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -1

Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138
           PSD +M      GGE  ++I + G +       + Q +L+G+D+    +   +   P   
Sbjct: 86  PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 145

Query: 137 NLPNHEQILLAYFCLTN 87
            L  H    +A F L+N
Sbjct: 146 LLDAHMNAKIADFGLSN 162



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>AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic subunit alpha-1|
           (EC 2.7.11.1) (AMPK alpha-1 chain)
          Length = 548

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -1

Query: 302 PSDEYMQSHPRDGGEKLEFIRQRGSVGS-----MXQSLLAGLDFVPCGLAATQQRAPVLT 138
           PSD +M      GGE  ++I + G +       + Q +L+G+D+    +   +   P   
Sbjct: 86  PSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENV 145

Query: 137 NLPNHEQILLAYFCLTN 87
            L  H    +A F L+N
Sbjct: 146 LLDAHMNAKIADFGLSN 162



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>VSI2_REOVL (P11314) Sigma-2 protein (Core protein)|
          Length = 418

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +1

Query: 118 CS*LGKLVKTGALCCVAARPHGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSS 297
           C+  G   +   L C  +  H  +  P +R   + PT P W M+ +    S    C+ S 
Sbjct: 241 CNRRGDAAEVWILSC--SLNHSAQIRPGNRSLFVMPTSPDWNMDVNLILSSTLTGCLCSG 298

Query: 298 DGLP 309
             LP
Sbjct: 299 SQLP 302



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>VSI2_REOVD (P03525) Sigma 2 protein (Core protein)|
          Length = 418

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +1

Query: 118 CS*LGKLVKTGALCCVAARPHGTKSNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSS 297
           C+  G   +   L C  +  H  +  P +R   + PT P W M+ +    S    C+ S 
Sbjct: 241 CNRRGDAAEVWILSC--SLNHSAQIRPGNRSLFVMPTSPDWNMDVNLILSSTLTGCLCSG 298

Query: 298 DGLP 309
             LP
Sbjct: 299 SQLP 302



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>GVPH_HALME (Q02233) Protein gvpH|
          Length = 216

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 190 SNPASRDXSMDPTEPRWRMNSSFSPPSRGWDCMYSSDGLPHRTPDAPHDHP 342
           + P   D S  P EP    +S     S       + D  P++TPD P DHP
Sbjct: 6   NGPGGSDDSDRPDEPD---DSDRPDESNSTGNPDTPDDRPNKTPDRPSDHP 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,492,036
Number of Sequences: 219361
Number of extensions: 1181018
Number of successful extensions: 2731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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