Clone Name | basd2n16 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 192 bits (97), Expect = 7e-46 Identities = 194/226 (85%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 109 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 168 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 11879710 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11879651 Query: 169 gctaggccacatgggacaaagtctaatcctgctagcagagactgntccatggatcctaca 228 || ||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct: 11879650 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11879591 Query: 229 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 285 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 11879590 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11879531 Query: 286 atgtactcatcagacggattgcctcataggactcctgatgctccac 331 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 11879530 aggaatccatctgatggattgccacacaggattcatgatgctccac 11879485 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Minus Query: 339 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 398 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 11879489 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11879430 Query: 399 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttgg 455 |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 11879429 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttgg 11879373
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 192 bits (97), Expect = 7e-46 Identities = 194/226 (85%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 109 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 168 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 11876473 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 11876414 Query: 169 gctaggccacatgggacaaagtctaatcctgctagcagagactgntccatggatcctaca 228 || ||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct: 11876413 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 11876354 Query: 229 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 285 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 11876353 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 11876294 Query: 286 atgtactcatcagacggattgcctcataggactcctgatgctccac 331 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 11876293 aggaatccatctgatggattgccacacaggattcatgatgctccac 11876248 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Minus Query: 339 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 398 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 11876252 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 11876193 Query: 399 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttgg 455 |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 11876192 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttgg 11876136
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 192 bits (97), Expect = 7e-46 Identities = 194/226 (85%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 109 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 168 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 30943 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 31002 Query: 169 gctaggccacatgggacaaagtctaatcctgctagcagagactgntccatggatcctaca 228 || ||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct: 31003 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 31062 Query: 229 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 285 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 31063 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 31122 Query: 286 atgtactcatcagacggattgcctcataggactcctgatgctccac 331 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 31123 aggaatccatctgatggattgccacacaggattcatgatgctccac 31168 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Plus Query: 339 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 398 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 31164 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 31223 Query: 399 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttgg 455 |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 31224 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttgg 31280
>dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115O15, full insert sequence Length = 3802 Score = 192 bits (97), Expect = 7e-46 Identities = 194/226 (85%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 109 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 168 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 223 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 282 Query: 169 gctaggccacatgggacaaagtctaatcctgctagcagagactgntccatggatcctaca 228 || ||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct: 283 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 342 Query: 229 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 285 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 343 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 402 Query: 286 atgtactcatcagacggattgcctcataggactcctgatgctccac 331 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 403 aggaatccatctgatggattgccacacaggattcatgatgctccac 448 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Plus Query: 339 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 398 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 444 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 503 Query: 399 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttgg 455 |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 504 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttgg 560
>dbj|AK066058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C14, full insert sequence Length = 1988 Score = 192 bits (97), Expect = 7e-46 Identities = 194/226 (85%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 109 agtagtatttgctcgtgattgggcaaattagtcaagacgggcgctctttgctgcgtggcc 168 ||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 228 agtagtacttgcacgtgattggcaaaattagtcaagacgggtgctctttgctgcgtggcc 287 Query: 169 gctaggccacatgggacaaagtctaatcctgctagcagagactgntccatggatcctaca 228 || ||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct: 288 gcgaggccacatgggacaaagtctaatcttgcaagcagagactgttctatggatcctaat 347 Query: 229 gagcctcgttggcggatgaattcgagcttctctcctcc---gtcgcggggatgggactgc 285 || ||| | |||||||||||||| |||||||||||||| ||| || ||||||||||| Sbjct: 348 gaaccttgctggcggatgaattcaagcttctctcctccaatgtcaaggagatgggactgc 407 Query: 286 atgtactcatcagacggattgcctcataggactcctgatgctccac 331 | | | |||| || |||||||| || |||| || ||||||||||| Sbjct: 408 aggaatccatctgatggattgccacacaggattcatgatgctccac 453 Score = 168 bits (85), Expect = 1e-38 Identities = 109/117 (93%) Strand = Plus / Plus Query: 339 tccaccttatgtgtcatcactatcatctcatagtaaaggaagtagaagtgcatttggcag 398 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 449 tccaccttatgtatcatcactgtcatcccatagtaaaggaagtagaagtgcatttggcag 508 Query: 399 tgaccagtacctgaatcaccaccattctgtatctgatggagcactttcttattttgg 455 |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 509 tgaccagtacttgaatcaccagcattctgtatcagatggggcactgtcttattttgg 565
>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence Length = 169439 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 79 taagctttatttgtcaaacaaaaata 104 |||| ||||||||||||||||||||| Sbjct: 164341 taagttttatttgtcaaacaaaaata 164316
>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence Length = 166595 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 96 acaaaaataagctagtagtatttgct 121 ||||||||||| |||||||||||||| Sbjct: 32449 acaaaaataaggtagtagtatttgct 32424
>gb|AC009704.8| Homo sapiens chromosome 18, clone RP11-231E4, complete sequence Length = 178691 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 79 taagctttatttgtcaaacaaaaata 104 |||| ||||||||||||||||||||| Sbjct: 9620 taagttttatttgtcaaacaaaaata 9595
>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 262797 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 tatctgatggagcactttctta 449 |||||||||||||||||||||| Sbjct: 245698 tatctgatggagcactttctta 245677
>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete sequence Length = 208105 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 gcagtgaccagtacctgaatc 415 ||||||||||||||||||||| Sbjct: 69584 gcagtgaccagtacctgaatc 69564
>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete sequence Length = 184857 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 gcagtgaccagtacctgaatc 415 ||||||||||||||||||||| Sbjct: 66944 gcagtgaccagtacctgaatc 66964
>gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, complete sequence Length = 62268 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 401 accagtacctgaatcaccaccattc 425 ||||||||||||| ||||||||||| Sbjct: 6325 accagtacctgaaacaccaccattc 6349
>emb|X61064.1|ALTRNALYS Acholeplasma laidlawii tRNA-Lys gene Length = 280 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ttatttgtcaaacaaaaataa 105 ||||||||||||||||||||| Sbjct: 24 ttatttgtcaaacaaaaataa 4
>gb|AC007011.1|AC007011 Homo sapiens chromosome 16 clone 165E7, complete sequence Length = 161264 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 aagtgcatttggcagtgacca 404 ||||||||||||||||||||| Sbjct: 87010 aagtgcatttggcagtgacca 87030
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atttgctcgtgattgggcaa 134 |||||||||||||||||||| Sbjct: 2050322 atttgctcgtgattgggcaa 2050341
>emb|AJ973436.1| Toxoptera citricida partial mRNA for hypothetical protein (ORF3), clone tcitEST3 Length = 402 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgctctttgctgcgtggccg 169 |||||||||||||||||||| Sbjct: 2 cgctctttgctgcgtggccg 21
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 aaataagctagtagtatttg 119 |||||||||||||||||||| Sbjct: 76668 aaataagctagtagtatttg 76649
>emb|AL159164.14| Human DNA sequence from clone RP1-104D1 on chromosome 6 Contains the 5' end of the BACH2 gene for BTB and CNC homology 1 basic leucine zipper transcription factor 2 and a CpG island, complete sequence Length = 62464 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atgtgtcatcactatcatct 366 |||||||||||||||||||| Sbjct: 16392 atgtgtcatcactatcatct 16373
>gb|AC126777.2| Homo sapiens chromosome 5 clone RP11-929P16, complete sequence Length = 88927 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 taagctttatttgtcaaacaaaaataag 106 |||| ||||||||||| ||||||||||| Sbjct: 58647 taagttttatttgtcatacaaaaataag 58674
>gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, complete sequence Length = 152005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgatggagcactttcttatt 451 |||||||||||||||||||| Sbjct: 131648 tgatggagcactttcttatt 131667
>gb|AC099514.2| Homo sapiens chromosome 5 clone RP11-454E7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 taagctttatttgtcaaacaaaaataag 106 |||| ||||||||||| ||||||||||| Sbjct: 56399 taagttttatttgtcatacaaaaataag 56426
>gb|AC087457.5| Homo sapiens chromosome 15, clone RP11-814P5, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgatggagcactttcttatt 451 |||||||||||||||||||| Sbjct: 17018 tgatggagcactttcttatt 17037
>gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, complete sequence Length = 98232 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgatggagcactttcttatt 451 |||||||||||||||||||| Sbjct: 77886 tgatggagcactttcttatt 77905
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 tggcactgcaggtgacactatttgacgctctc 37 ||||||||||||| || || |||||||||||| Sbjct: 4465407 tggcactgcaggtaactctctttgacgctctc 4465438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,885,391 Number of Sequences: 3902068 Number of extensions: 3885391 Number of successful extensions: 63498 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63351 Number of HSP's gapped (non-prelim): 142 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)