Clone Name | basd2n14 |
---|---|
Clone Library Name | barley_pub |
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 92986 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 92927 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 92926 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 92867 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 92866 acggtggatcgccgagggctactccagggaca 92835 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 73203 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 73144 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 73143 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 73084 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 73083 acggtggatcgccgagggctactccagggaca 73052 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 93123 tgtggtggacttcctaaagtaatagttg 93096 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 73340 tgtggtggacttcctaaagtaatagttg 73313
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 22732186 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 22732127 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 22732126 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 22732067 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 22732066 acggtggatcgccgagggctactccagggaca 22732035 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 22712403 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 22712344 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 22712343 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 22712284 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 22712283 acggtggatcgccgagggctactccagggaca 22712252 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 22732323 tgtggtggacttcctaaagtaatagttg 22732296 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 22712540 tgtggtggacttcctaaagtaatagttg 22712513
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 23042097 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 23042038 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 23042037 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 23041978 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 23041977 acggtggatcgccgagggctactccagggaca 23041946 Score = 56.0 bits (28), Expect = 1e-04 Identities = 121/152 (79%) Strand = Plus / Minus Query: 261 gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320 |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| ||||||||||| Sbjct: 23022314 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 23022255 Query: 321 tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380 |||||| || || ||||||| |||||| || ||| ||||||||||| | |||| Sbjct: 23022254 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 23022195 Query: 381 gcggtggattgctgagggttactccagggaca 412 |||||||| || ||||| ||||||||||||| Sbjct: 23022194 acggtggatcgccgagggctactccagggaca 23022163 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 23042234 tgtggtggacttcctaaagtaatagttg 23042207 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 tgtggtggacttccgaaagttatagttg 151 |||||||||||||| ||||| ||||||| Sbjct: 23022451 tgtggtggacttcctaaagtaatagttg 23022424
>ref|XM_483568.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4458 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 aggcggtggattgctgagggttactc 404 |||||||||||||| ||||||||||| Sbjct: 2914 aggcggtggattgcagagggttactc 2939
>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence Length = 146386 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 533 tcaatggcttcttccgtgagtatatt 558 ||||||||||||| |||||||||||| Sbjct: 5589 tcaatggcttctttcgtgagtatatt 5614
>gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-24b4, complete sequence Length = 110753 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 533 tcaatggcttcttccgtgagtatatt 558 ||||||||||||| |||||||||||| Sbjct: 101703 tcaatggcttctttcgtgagtatatt 101728
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 aggcggtggattgctgagggttactc 404 |||||||||||||| ||||||||||| Sbjct: 27018443 aggcggtggattgcagagggttactc 27018468 Score = 40.1 bits (20), Expect = 8.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 304 gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363 ||||| || |||||||||||||| || || |||| |||||| |||||| ||| ||| Sbjct: 8944809 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 8944868 Query: 364 cggaggcgactagtaaggcggtggattgctgagggttact 403 |||||||| | || ||||||||||| || ||||| |||| Sbjct: 8944869 cggaggcgtttggtgaggcggtggatagcggagggatact 8944908
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 aggcggtggattgctgagggttactc 404 |||||||||||||| ||||||||||| Sbjct: 119843 aggcggtggattgcagagggttactc 119868
>gb|AC115799.10| Mus musculus chromosome 6, clone RP23-406G9, complete sequence Length = 227078 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 agggagagctcatgtttaatg 69 ||||||||||||||||||||| Sbjct: 2451 agggagagctcatgtttaatg 2471
>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163461 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 agggagagctcatgtttaatg 69 ||||||||||||||||||||| Sbjct: 111091 agggagagctcatgtttaatg 111111
>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence Length = 222021 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 aaacaattctgtgacctcat 464 |||||||||||||||||||| Sbjct: 123123 aaacaattctgtgacctcat 123142
>ref|XM_480965.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4114 Score = 40.1 bits (20), Expect = 8.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 304 gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363 ||||| || |||||||||||||| || || |||| |||||| |||||| ||| ||| Sbjct: 2178 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 2237 Query: 364 cggaggcgactagtaaggcggtggattgctgagggttact 403 |||||||| | || ||||||||||| || ||||| |||| Sbjct: 2238 cggaggcgtttggtgaggcggtggatagcggagggatact 2277
>ref|NM_019413.1| Mus musculus roundabout homolog 1 (Drosophila) (Robo1), mRNA Length = 6856 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 885 agagtgaagtcgcagagcta 904
>gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome 16, complete sequence Length = 183323 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 183252 agagtgaagtcgcagagcta 183233
>gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome 6, complete sequence Length = 110480 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 aaacaattctgtgacctcat 464 |||||||||||||||||||| Sbjct: 21299 aaacaattctgtgacctcat 21318
>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete sequence Length = 179952 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aagaatctgcagagatgact 438 |||||||||||||||||||| Sbjct: 129501 aagaatctgcagagatgact 129520
>gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome 6, complete sequence Length = 200673 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 tgtgacctcattaatctgag 473 |||||||||||||||||||| Sbjct: 151629 tgtgacctcattaatctgag 151610
>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence Length = 209671 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aaaaataagttcatgctaga 227 |||||||||||||||||||| Sbjct: 35442 aaaaataagttcatgctaga 35423
>ref|XM_537282.2| PREDICTED: Canis familiaris estrogen-regulated LIV-1 protein (LIV-1), mRNA Length = 2299 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 acagccatgaagaatctgca 429 |||||||||||||||||||| Sbjct: 1106 acagccatgaagaatctgca 1125
>gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome 16, complete sequence Length = 215805 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 55373 agagtgaagtcgcagagcta 55392
>gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map 10, complete sequence Length = 228883 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actctttctaccaaaaataa 215 |||||||||||||||||||| Sbjct: 163965 actctttctaccaaaaataa 163946
>emb|Y17793.1|MMU17793 Mus musculus mRNA for Dutt1 protein Length = 6922 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 885 agagtgaagtcgcagagcta 904
>gb|AC114408.18| Mus musculus chromosome 5, clone RP23-51J22, complete sequence Length = 230044 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 aacaattctgtgacctcatt 465 |||||||||||||||||||| Sbjct: 57081 aacaattctgtgacctcatt 57062
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 437 ctggggagaaacaattctgtgacctcat 464 |||| ||||||||||||||||| ||||| Sbjct: 114183 ctggagagaaacaattctgtgatctcat 114156
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 437 ctggggagaaacaattctgtgacctcat 464 |||| ||||||||||||||||| ||||| Sbjct: 70109 ctggagagaaacaattctgtgatctcat 70082
>dbj|AK142047.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230012M05 product:roundabout homolog 1 (Drosophila), full insert sequence Length = 3837 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 1569 agagtgaagtcgcagagcta 1588
>dbj|AK138485.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330036L20 product:Transmembrane receptor Robo1 homolog [Rattus norvegicus], full insert sequence Length = 1869 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 agagtgaagtcgcagagcta 105 |||||||||||||||||||| Sbjct: 1623 agagtgaagtcgcagagcta 1642
>gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230689 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 actctttctaccaaaaataa 215 |||||||||||||||||||| Sbjct: 68486 actctttctaccaaaaataa 68467
>gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, complete sequence Length = 177433 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 agagatgactggggagaaac 448 |||||||||||||||||||| Sbjct: 45048 agagatgactggggagaaac 45067
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 437 ctggggagaaacaattctgtgacctcat 464 |||| ||||||||||||||||| ||||| Sbjct: 43170 ctggagagaaacaattctgtgatctcat 43197
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 8.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 304 gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363 ||||| || |||||||||||||| || || |||| |||||| |||||| ||| ||| Sbjct: 46471 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 46530 Query: 364 cggaggcgactagtaaggcggtggattgctgagggttact 403 |||||||| | || ||||||||||| || ||||| |||| Sbjct: 46531 cggaggcgtttggtgaggcggtggatagcggagggatact 46570
>emb|BX323575.10| Zebrafish DNA sequence from clone CH211-278N20 in linkage group 18, complete sequence Length = 151144 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 cgttgggtttgggtggcaca 513 |||||||||||||||||||| Sbjct: 51516 cgttgggtttgggtggcaca 51497
>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence Length = 196556 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aagaatctgcagagatgact 438 |||||||||||||||||||| Sbjct: 23688 aagaatctgcagagatgact 23707
>dbj|AK073893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033077K04, full insert sequence Length = 4114 Score = 40.1 bits (20), Expect = 8.6 Identities = 80/100 (80%) Strand = Plus / Plus Query: 304 gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363 ||||| || |||||||||||||| || || |||| |||||| |||||| ||| ||| Sbjct: 2178 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 2237 Query: 364 cggaggcgactagtaaggcggtggattgctgagggttact 403 |||||||| | || ||||||||||| || ||||| |||| Sbjct: 2238 cggaggcgtttggtgaggcggtggatagcggagggatact 2277
>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gtggagttaagggagagctc 59 |||||||||||||||||||| Sbjct: 135117 gtggagttaagggagagctc 135098 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,227,036 Number of Sequences: 3902068 Number of extensions: 5227036 Number of successful extensions: 124716 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124512 Number of HSP's gapped (non-prelim): 204 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)