ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
4ref|XM_483568.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.55
5gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete se... 44 0.55
6gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-2... 44 0.55
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
8dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
9gb|AC115799.10| Mus musculus chromosome 6, clone RP23-406G9, com... 42 2.2
10gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cance... 42 2.2
11gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome... 40 8.6
12ref|XM_480965.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.6
13ref|NM_019413.1| Mus musculus roundabout homolog 1 (Drosophila) ... 40 8.6
14gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome... 40 8.6
15gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome... 40 8.6
16gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosom... 40 8.6
17gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome... 40 8.6
18gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 40 8.6
19ref|XM_537282.2| PREDICTED: Canis familiaris estrogen-regulated ... 40 8.6
20gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome... 40 8.6
21gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map... 40 8.6
22emb|Y17793.1|MMU17793 Mus musculus mRNA for Dutt1 protein 40 8.6
23gb|AC114408.18| Mus musculus chromosome 5, clone RP23-51J22, com... 40 8.6
24gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 40 8.6
25gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, compl... 40 8.6
26dbj|AK142047.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 8.6
27dbj|AK138485.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 8.6
28gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Canc... 40 8.6
29gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, comple... 40 8.6
30gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Canc... 40 8.6
31dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
32emb|BX323575.10| Zebrafish DNA sequence from clone CH211-278N20 ... 40 8.6
33gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, c... 40 8.6
34dbj|AK073893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
35gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 ... 40 8.6 
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                         
Query: 261   gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
             |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 92986 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 92927

                                                                         
Query: 321   tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
             |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 92926 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 92867

                                             
Query: 381   gcggtggattgctgagggttactccagggaca 412
              |||||||| || ||||| |||||||||||||
Sbjct: 92866 acggtggatcgccgagggctactccagggaca 92835



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                         
Query: 261   gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
             |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 73203 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 73144

                                                                         
Query: 321   tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
             |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 73143 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 73084

                                             
Query: 381   gcggtggattgctgagggttactccagggaca 412
              |||||||| || ||||| |||||||||||||
Sbjct: 73083 acggtggatcgccgagggctactccagggaca 73052



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 124   tgtggtggacttccgaaagttatagttg 151
             |||||||||||||| ||||| |||||||
Sbjct: 93123 tgtggtggacttcctaaagtaatagttg 93096



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 124   tgtggtggacttccgaaagttatagttg 151
             |||||||||||||| ||||| |||||||
Sbjct: 73340 tgtggtggacttcctaaagtaatagttg 73313
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                            
Query: 261      gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
                |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 22732186 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 22732127

                                                                            
Query: 321      tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
                |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 22732126 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 22732067

                                                
Query: 381      gcggtggattgctgagggttactccagggaca 412
                 |||||||| || ||||| |||||||||||||
Sbjct: 22732066 acggtggatcgccgagggctactccagggaca 22732035



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                            
Query: 261      gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
                |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 22712403 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 22712344

                                                                            
Query: 321      tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
                |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 22712343 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 22712284

                                                
Query: 381      gcggtggattgctgagggttactccagggaca 412
                 |||||||| || ||||| |||||||||||||
Sbjct: 22712283 acggtggatcgccgagggctactccagggaca 22712252



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 124      tgtggtggacttccgaaagttatagttg 151
                |||||||||||||| ||||| |||||||
Sbjct: 22732323 tgtggtggacttcctaaagtaatagttg 22732296



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 124      tgtggtggacttccgaaagttatagttg 151
                |||||||||||||| ||||| |||||||
Sbjct: 22712540 tgtggtggacttcctaaagtaatagttg 22712513
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                            
Query: 261      gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
                |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 23042097 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 23042038

                                                                            
Query: 321      tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
                |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 23042037 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 23041978

                                                
Query: 381      gcggtggattgctgagggttactccagggaca 412
                 |||||||| || ||||| |||||||||||||
Sbjct: 23041977 acggtggatcgccgagggctactccagggaca 23041946



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Minus

                                                                            
Query: 261      gggtctgtttggttggatgaactcgtacttccgcaactgcccagattctctcaagccatg 320
                |||||| |||| ||||||| | || ||||| | ||| | ||| ||||| |||||||||||
Sbjct: 23022314 gggtctatttgcttggatgcaatcctactttcacaattccccggattccctcaagccatg 23022255

                                                                            
Query: 321      tatcttatatctaccaattttccctcgaaaccacctcatacggcggaggcgactagtaag 380
                |||||| || ||  ||||||| |||||| ||     ||| |||||||||||  |  ||||
Sbjct: 23022254 tatcttctacctgtcaatttttcctcgagacagaagcattcggcggaggcgtttgataag 23022195

                                                
Query: 381      gcggtggattgctgagggttactccagggaca 412
                 |||||||| || ||||| |||||||||||||
Sbjct: 23022194 acggtggatcgccgagggctactccagggaca 23022163



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 124      tgtggtggacttccgaaagttatagttg 151
                |||||||||||||| ||||| |||||||
Sbjct: 23042234 tgtggtggacttcctaaagtaatagttg 23042207



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 124      tgtggtggacttccgaaagttatagttg 151
                |||||||||||||| ||||| |||||||
Sbjct: 23022451 tgtggtggacttcctaaagtaatagttg 23022424
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>ref|XM_483568.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4458

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 379  aggcggtggattgctgagggttactc 404
            |||||||||||||| |||||||||||
Sbjct: 2914 aggcggtggattgcagagggttactc 2939
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>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence
          Length = 146386

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 533  tcaatggcttcttccgtgagtatatt 558
            ||||||||||||| ||||||||||||
Sbjct: 5589 tcaatggcttctttcgtgagtatatt 5614
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>gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-24b4, complete sequence
          Length = 110753

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 533    tcaatggcttcttccgtgagtatatt 558
              ||||||||||||| ||||||||||||
Sbjct: 101703 tcaatggcttctttcgtgagtatatt 101728
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 379      aggcggtggattgctgagggttactc 404
                |||||||||||||| |||||||||||
Sbjct: 27018443 aggcggtggattgcagagggttactc 27018468



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                           
Query: 304     gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363
               ||||| || |||||||||||||| || ||  |||| ||||||   ||||||  ||| |||
Sbjct: 8944809 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 8944868

                                                       
Query: 364     cggaggcgactagtaaggcggtggattgctgagggttact 403
               ||||||||  | || ||||||||||| || ||||| ||||
Sbjct: 8944869 cggaggcgtttggtgaggcggtggatagcggagggatact 8944908
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>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0666G10
          Length = 150761

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 379    aggcggtggattgctgagggttactc 404
              |||||||||||||| |||||||||||
Sbjct: 119843 aggcggtggattgcagagggttactc 119868
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>gb|AC115799.10| Mus musculus chromosome 6, clone RP23-406G9, complete sequence
          Length = 227078

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   agggagagctcatgtttaatg 69
            |||||||||||||||||||||
Sbjct: 2451 agggagagctcatgtttaatg 2471
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>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 163461

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     agggagagctcatgtttaatg 69
              |||||||||||||||||||||
Sbjct: 111091 agggagagctcatgtttaatg 111111
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>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence
          Length = 222021

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    aaacaattctgtgacctcat 464
              ||||||||||||||||||||
Sbjct: 123123 aaacaattctgtgacctcat 123142
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>ref|XM_480965.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4114

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 304  gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363
            ||||| || |||||||||||||| || ||  |||| ||||||   ||||||  ||| |||
Sbjct: 2178 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 2237

                                                    
Query: 364  cggaggcgactagtaaggcggtggattgctgagggttact 403
            ||||||||  | || ||||||||||| || ||||| ||||
Sbjct: 2238 cggaggcgtttggtgaggcggtggatagcggagggatact 2277
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>ref|NM_019413.1| Mus musculus roundabout homolog 1 (Drosophila) (Robo1), mRNA
          Length = 6856

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  agagtgaagtcgcagagcta 105
           ||||||||||||||||||||
Sbjct: 885 agagtgaagtcgcagagcta 904
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>gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome 16, complete sequence
          Length = 183323

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     agagtgaagtcgcagagcta 105
              ||||||||||||||||||||
Sbjct: 183252 agagtgaagtcgcagagcta 183233
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>gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome 6, complete sequence
          Length = 110480

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   aaacaattctgtgacctcat 464
             ||||||||||||||||||||
Sbjct: 21299 aaacaattctgtgacctcat 21318
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>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete sequence
          Length = 179952

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    aagaatctgcagagatgact 438
              ||||||||||||||||||||
Sbjct: 129501 aagaatctgcagagatgact 129520
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>gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome 6, complete sequence
          Length = 200673

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    tgtgacctcattaatctgag 473
              ||||||||||||||||||||
Sbjct: 151629 tgtgacctcattaatctgag 151610
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>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   aaaaataagttcatgctaga 227
             ||||||||||||||||||||
Sbjct: 35442 aaaaataagttcatgctaga 35423
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>ref|XM_537282.2| PREDICTED: Canis familiaris estrogen-regulated LIV-1 protein (LIV-1),
            mRNA
          Length = 2299

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 410  acagccatgaagaatctgca 429
            ||||||||||||||||||||
Sbjct: 1106 acagccatgaagaatctgca 1125
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>gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome 16, complete sequence
          Length = 215805

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    agagtgaagtcgcagagcta 105
             ||||||||||||||||||||
Sbjct: 55373 agagtgaagtcgcagagcta 55392
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>gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map 10, complete sequence
          Length = 228883

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    actctttctaccaaaaataa 215
              ||||||||||||||||||||
Sbjct: 163965 actctttctaccaaaaataa 163946
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>emb|Y17793.1|MMU17793 Mus musculus mRNA for Dutt1 protein
          Length = 6922

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  agagtgaagtcgcagagcta 105
           ||||||||||||||||||||
Sbjct: 885 agagtgaagtcgcagagcta 904
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>gb|AC114408.18| Mus musculus chromosome 5, clone RP23-51J22, complete sequence
          Length = 230044

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   aacaattctgtgacctcatt 465
             ||||||||||||||||||||
Sbjct: 57081 aacaattctgtgacctcatt 57062
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>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 437    ctggggagaaacaattctgtgacctcat 464
              |||| ||||||||||||||||| |||||
Sbjct: 114183 ctggagagaaacaattctgtgatctcat 114156
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>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence
          Length = 181462

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 437   ctggggagaaacaattctgtgacctcat 464
             |||| ||||||||||||||||| |||||
Sbjct: 70109 ctggagagaaacaattctgtgatctcat 70082
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>dbj|AK142047.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230012M05 product:roundabout homolog 1
            (Drosophila), full insert sequence
          Length = 3837

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   agagtgaagtcgcagagcta 105
            ||||||||||||||||||||
Sbjct: 1569 agagtgaagtcgcagagcta 1588
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>dbj|AK138485.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330036L20 product:Transmembrane receptor
            Robo1 homolog [Rattus norvegicus], full insert sequence
          Length = 1869

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   agagtgaagtcgcagagcta 105
            ||||||||||||||||||||
Sbjct: 1623 agagtgaagtcgcagagcta 1642
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>gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 230689

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   actctttctaccaaaaataa 215
             ||||||||||||||||||||
Sbjct: 68486 actctttctaccaaaaataa 68467
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>gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, complete sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   agagatgactggggagaaac 448
             ||||||||||||||||||||
Sbjct: 45048 agagatgactggggagaaac 45067
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>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 437   ctggggagaaacaattctgtgacctcat 464
             |||| ||||||||||||||||| |||||
Sbjct: 43170 ctggagagaaacaattctgtgatctcat 43197
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>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049G15
          Length = 155303

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                         
Query: 304   gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363
             ||||| || |||||||||||||| || ||  |||| ||||||   ||||||  ||| |||
Sbjct: 46471 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 46530

                                                     
Query: 364   cggaggcgactagtaaggcggtggattgctgagggttact 403
             ||||||||  | || ||||||||||| || ||||| ||||
Sbjct: 46531 cggaggcgtttggtgaggcggtggatagcggagggatact 46570
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>emb|BX323575.10| Zebrafish DNA sequence from clone CH211-278N20 in linkage group 18,
             complete sequence
          Length = 151144

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   cgttgggtttgggtggcaca 513
             ||||||||||||||||||||
Sbjct: 51516 cgttgggtttgggtggcaca 51497
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>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence
          Length = 196556

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   aagaatctgcagagatgact 438
             ||||||||||||||||||||
Sbjct: 23688 aagaatctgcagagatgact 23707
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>dbj|AK073893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033077K04, full
            insert sequence
          Length = 4114

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 304  gattctctcaagccatgtatcttatatctaccaattttccctcgaaaccacctcatacgg 363
            ||||| || |||||||||||||| || ||  |||| ||||||   ||||||  ||| |||
Sbjct: 2178 gattccctgaagccatgtatcttgtacctgtcaatcttccctgtgaaccacaccatccgg 2237

                                                    
Query: 364  cggaggcgactagtaaggcggtggattgctgagggttact 403
            ||||||||  | || ||||||||||| || ||||| ||||
Sbjct: 2238 cggaggcgtttggtgaggcggtggatagcggagggatact 2277
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>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence
          Length = 172072

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     gtggagttaagggagagctc 59
              ||||||||||||||||||||
Sbjct: 135117 gtggagttaagggagagctc 135098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,227,036
Number of Sequences: 3902068
Number of extensions: 5227036
Number of successful extensions: 124716
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124512
Number of HSP's gapped (non-prelim): 204
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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