ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 64 2e-10
2CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 60 2e-09
3CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 60 2e-09
4CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 60 2e-09
5CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 59 3e-09
6CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 58 7e-09
7CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 55 6e-08
8CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 55 6e-08
9CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 54 9e-08
10CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 54 9e-08
11CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 54 1e-07
12CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 53 2e-07
13CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 53 2e-07
14CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 53 3e-07
15CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 53 3e-07
16CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 52 4e-07
17CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 52 5e-07
18CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 51 1e-06
19CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 50 1e-06
20CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 50 1e-06
21CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 50 2e-06
22CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 50 2e-06
23CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 48 7e-06
24CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 47 1e-05
25CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 47 2e-05
26CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 47 2e-05
27CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 47 2e-05
28CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 46 3e-05
29CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 46 3e-05
30CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 45 4e-05
31CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 45 6e-05
32CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 45 7e-05
33CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 45 7e-05
34CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 43 2e-04
35CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 43 2e-04
36CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 40 0.002
37CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 39 0.004
38CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 36 0.027
39CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 35 0.045
40CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloropl... 35 0.077
41CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloropl... 35 0.077
42CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 33 0.17
43CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo... 33 0.29
44CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 32 0.38
45CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 32 0.38
46CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 32 0.65
47CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 31 1.1
48CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 30 1.5
49CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 30 2.5
50CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 29 3.2
51RK22_CHLRE (Q84U21) 50S ribosomal protein L22, chloroplast precu... 29 4.2
52CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 29 4.2
53CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 28 9.4 
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGPL 105
           G+ARV  RKT AKAKQV+S SPWYGSDRVLYLGPL
Sbjct: 28  GDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPL 62
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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 30/36 (83%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVAS-GSPWYGSDRVLYLGPL 105
           GEARVT RKT AKAK  AS GSPWYG DRVLYLGPL
Sbjct: 26  GEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPL 61
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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 30/36 (83%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVA-SGSPWYGSDRVLYLGPL 105
           GEARVT RKT AKAK  A SGSPWYG DRVLYLGPL
Sbjct: 26  GEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPL 61
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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGPL 105
           GE R+T RK+ AK K  ASGSPWYG+DRVLYLGPL
Sbjct: 23  GEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPL 57
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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGPL 105
           GE R+T RKT AK K   SGSPWYG+DRVLYLGPL
Sbjct: 26  GEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPL 60
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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 28/36 (77%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVAS-GSPWYGSDRVLYLGPL 105
           GEAR+T RKT AK K  AS GSPWYG+DRVLYLGPL
Sbjct: 26  GEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPL 61
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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT +KAK V+SGSPWYG DRV YLGP
Sbjct: 28  GNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGP 61
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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT +KAK V+SGSPWYG DRV YLGP
Sbjct: 29  GNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGP 62
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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 24/34 (70%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           GE R+T RKT  K K  ASGSPWYG DRV YLGP
Sbjct: 24  GEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGP 57
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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 24/34 (70%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RVT RKT  KAK  +SGSPWYG DRV YLGP
Sbjct: 29  GNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGP 62
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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 28  GNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGP 61
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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT  KAK ++SGSPWYG DRV YLGP
Sbjct: 29  GNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGP 62
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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  + T RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 29  GNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGP 62
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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  + T RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 28  GNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGP 61
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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  + T RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 29  GNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGP 62
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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 23/34 (67%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           GE R+T RKT  K K V S SPWYG DRV YLGP
Sbjct: 29  GEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGP 62
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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           +VT RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 31  KVTMRKTVTKAKPVSSGSPWYGPDRVKYLGP 61
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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT +KAK V+S SPWYG +RV YLGP
Sbjct: 29  GNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGP 62
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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +   RKT  KAK V+SGSPWYG DRV YLGP
Sbjct: 29  GNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGP 62
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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  +VT RKT  KAK  +S SPWYG DRV YLGP
Sbjct: 29  GNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGP 62
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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 25/34 (73%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RVT RKT AK K   SGSPWYGSDRV YLGP
Sbjct: 29  GSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGP 61
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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 25/34 (73%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RVT RKT AK K   SGSPWYGSDRV YLGP
Sbjct: 29  GSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGP 61
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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 25/35 (71%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   GEARVTXRK-TXAKAKQVASGSPWYGSDRVLYLGP 102
           GEARVT RK T  K    AS SPWYG DRVLYLGP
Sbjct: 35  GEARVTMRKATTKKLTASASTSPWYGPDRVLYLGP 69
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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G AR T RK+    K  +SGSPWYG DRV YLGP
Sbjct: 31  GAARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 64
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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G A+ T RKT +K+  V+SGSPWYG DRV YLGP
Sbjct: 19  GNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGP 50
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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G AR T RK+    K  +SGSPWYG DRV YLGP
Sbjct: 30  GGARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 63
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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVAS-GSPWYGSDRVLYLGP 102
           GEAR+T RK   K    AS  SPWYG DRVLYLGP
Sbjct: 39  GEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGP 73
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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RV+ RKT AK   VAS SPWYG DRV YLGP
Sbjct: 29  GNGRVSMRKTVAKP--VASSSPWYGPDRVKYLGP 60
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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RV+ RKT +K   V+SGSPWYG DRV YLGP
Sbjct: 9   GVGRVSMRKTASKT--VSSGSPWYGPDRVKYLGP 40
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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           RV+ RKT  K  QV+SGSPWYG DRV YLGP
Sbjct: 30  RVSMRKTVTK--QVSSGSPWYGPDRVKYLGP 58
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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RV+ RKT  K   V+SGSPWYG DRV YLGP
Sbjct: 28  GVGRVSMRKTAPKT--VSSGSPWYGPDRVKYLGP 59
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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVAS-GSPWYGSDRVLYLGP 102
           GEAR+T RK   +    AS  SPWYG DRV+YLGP
Sbjct: 39  GEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGP 73
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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G+ARV+ RKT A  K    GSPWYG DRV YLGP
Sbjct: 29  GDARVSMRKTAATKKV---GSPWYGPDRVKYLGP 59
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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/34 (64%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RVT RKT        SGSPWYGSDRV YLGP
Sbjct: 29  GTGRVTMRKTVKPTGP--SGSPWYGSDRVKYLGP 60
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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/34 (61%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  R+T RK  A AK   S SPWYG DRV YLGP
Sbjct: 29  GNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGP 60
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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RV+ RKT    K   S SPWYG DRV YLGP
Sbjct: 29  GNGRVSMRKT---VKAPVSDSPWYGPDRVKYLGP 59
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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/34 (61%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           GEARV      +KA    SGS WYGSDR LYLGP
Sbjct: 30  GEARVQMMAPKSKAP---SGSIWYGSDRPLYLGP 60
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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 36.2 bits (82), Expect = 0.027
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           GE R+T R+T   A Q    S WYG DR  YLGP
Sbjct: 31  GEGRITMRRTVKSAPQ----SIWYGEDRPKYLGP 60
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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +1

Query: 4   EARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           EARVT R+T +K+    S + WYG+DR  +LGP
Sbjct: 33  EARVTMRRTVSKS--AGSDTIWYGADRPKFLGP 63
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>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast|
          precursor (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.077
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 1  GEARVTXRKTXAKAKQVASGSPW 69
          G  R+T RKT AK K  +SGSPW
Sbjct: 29 GNGRITMRKTAAKPKPASSGSPW 51
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>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast|
          precursor (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.077
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 1  GEARVTXRKTXAKAKQVASGSPW 69
          G  R+T RKT AK K  +SGSPW
Sbjct: 29 GNGRITMRKTAAKPKPASSGSPW 51
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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G+AR T R+T   A +    S WYG DR  YLGP
Sbjct: 31  GQARFTMRRTVKSAPE----SIWYGPDRPKYLGP 60
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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 4   EARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           +AR+T R+T   A +    S WYG DR  YLGP
Sbjct: 33  QARITMRRTVRSAPE----SIWYGPDRPKYLGP 61
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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  R T R+T   A Q    S WYG DR  YLGP
Sbjct: 31  GGGRATMRRTVKSAPQ----SIWYGEDRPKYLGP 60
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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           RVT R+T   A Q    S WYG DR  YLGP
Sbjct: 6   RVTMRRTVKSAPQ----SIWYGEDRPKYLGP 32
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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 31.6 bits (70), Expect = 0.65
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           R+T R+T   A Q    S WYG DR  YLGP
Sbjct: 32  RITMRRTVKSAPQ----SIWYGPDRPKYLGP 58
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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           R T R+T   A Q    S WYG DR  YLGP
Sbjct: 34  RATMRRTVKSAPQ----SIWYGEDRPKYLGP 60
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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 43  KQVASGSPWYGSDRVLYLGP 102
           K  +S SPW+G D V YLGP
Sbjct: 4   KVASSSSPWHGPDGVKYLGP 23
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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   GEARVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           G  RV+ R+T   A      S WYG DR  YLGP
Sbjct: 31  GGGRVSMRRTVKSAPT----SIWYGPDRPKYLGP 60
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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  RVTXRKTXAKAKQVASGSPWYGSDRVLYLGP 102
           RV+ R+T   A +    S WYG DR  YLGP
Sbjct: 33  RVSMRRTIKSAPE----SIWYGPDRPKYLGP 59
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>RK22_CHLRE (Q84U21) 50S ribosomal protein L22, chloroplast precursor|
          Length = 175

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 5   RLASPXAKRXQRPSRLPPAARGTALTVCSTS 97
           R   P      RP+R+ P AR TA  VCS +
Sbjct: 17  RSVQPFRPAAVRPARIAPVARKTATVVCSAA 47
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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 40  AKQVASGSPWYGSDRVLYLGP 102
           A+   S   WYG DRV YLGP
Sbjct: 38  ARFTMSNDLWYGPDRVKYLGP 58
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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +1

Query: 67  WYGSDRVLYLGP 102
           WYG DRV YLGP
Sbjct: 50  WYGPDRVKYLGP 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,462,378
Number of Sequences: 219361
Number of extensions: 126316
Number of successful extensions: 429
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 80,573,946
effective HSP length: 11
effective length of database: 78,160,975
effective search space used: 1875863400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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