ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding p... 105 2e-20
2gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds 96 2e-17
3gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein g... 92 4e-16
4emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein 88 6e-15
5emb|AJ635207.1| Triticum durum ssp. durum partial mRNA for putat... 84 9e-14
6emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMW... 66 2e-08
7emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlo... 60 1e-06
8ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predic... 58 5e-06
9ref|NM_192636.1| Oryza sativa (japonica cultivar-group), predic... 58 5e-06
10gb|AY100470.1| Oryza sativa (indica cultivar-group) putative sol... 58 5e-06
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-06
12dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-06
13dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-06
14dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
15dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
16emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chloro... 58 5e-06
17dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
18dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
19dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
20dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-06
21gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protei... 58 5e-06
22gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/... 52 3e-04
23emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chloro... 50 0.001
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
25dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
26dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
27dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
28dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
29dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
30dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
31dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
32dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRN... 50 0.001
33gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B... 48 0.005
34ref|XM_426224.1| PREDICTED: Gallus gallus similar to transcripti... 44 0.078
35ref|NM_102733.2| Arabidopsis thaliana CAB1 (CHLOROPHYLL A/B BIND... 42 0.31
36gb|AY389553.1| Hyacinthus orientalis chloroplast chlorophyll A-B... 42 0.31
37gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B... 42 0.31
38emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chl... 42 0.31
39gb|AY091169.1| Arabidopsis thaliana putative chlorophyll a/b-bin... 42 0.31
40gb|AY050935.1| Arabidopsis thaliana putative photosystem II type... 42 0.31
41emb|AJ843976.1| Plantago major partial mRNA for light harvesting... 42 0.31
42gb|AY058180.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, com... 42 0.31
43gb|AF428359.1|AF428359 Arabidopsis thaliana At1g29930/F1N18_23 m... 42 0.31
44gb|AY045673.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, com... 42 0.31
45emb|BX815726.1|CNS0ACD7 Arabidopsis thaliana Full-length cDNA Co... 42 0.31
46emb|BX817619.1|CNS0AAVV Arabidopsis thaliana Full-length cDNA Co... 42 0.31
47gb|AC022455.5|AC022455 Arabidopsis thaliana chromosome 1 BAC T1P... 42 0.31
48gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N... 42 0.31
49emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll ... 42 0.31
50emb|X03909.1|ATLHCP3 A.thaliana gene (LHCP AB 140) for chlorophy... 42 0.31
51gb|AY109324.1| Zea mays CL187_1 mRNA sequence 42 0.31
52gb|AY389573.1| Hyacinthus orientalis chloroplast chlorophyll A-B... 40 1.2
53emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 1.2
54emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 40 1.2
55dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue... 40 1.2
56gb|AF220527.1|AF220527 Euphorbia esula chlorophyll a/b binding p... 40 1.2
57gb|M16057.1|CUSLHCPA Cucumber LHCP mRNA encoding chlorophyll a/b... 40 1.2
58dbj|D78207.1|PHNCABBP Japanese morning glory mRNA for chlorophyl... 40 1.2
59dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 4.8
60dbj|AB115771.1| Physcomitrella patens subsp. patens PpLhcb1 gene... 38 4.8

>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor
           (Wcab) mRNA, complete cds
          Length = 918

 Score =  105 bits (53), Expect = 2e-20
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggcagc 63
           ||||| |||||||||| |||||| || |  |||||||| ||||||||| |||||||||||
Sbjct: 94  gaggcccgcgtcaccatgcgcaagaccgcagcaaaggcaaagcaggtttcctccggcagc 153

                                              
Query: 64  ccgtggtacggctctgaccgtgtgctctacctcgg 98
           || ||||||||  ||||||||||||||||||||||
Sbjct: 154 ccatggtacggtgctgaccgtgtgctctacctcgg 188



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>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds
          Length = 1044

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggcagc 63
           ||||| |||||||||| |||||| || | ||| |||||||||| |||  | |||||||||
Sbjct: 148 gaggcgcgcgtcaccatgcgcaagaccgcggccaaggccaagccggtgtcgtccggcagc 207

                                                    
Query: 64  ccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||| || ||||| |||||||||||||| |||||
Sbjct: 208 ccgtggtacgggtccgaccgcgtgctctacctcggcccgct 248



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>gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein gene, complete cds
          Length = 1191

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                            
Query: 59  gcagcccgtggtacggctctgaccgtgtgctctacctcggnccgctttc 107
           |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 gcagcccgtggtacggctctgaccgtgtgctctacctcggcccgctttc 388



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>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein
          Length = 934

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggc 60
           ||||||||||||||||||| |||||| || | ||| || || ||||| ||| ||||| ||
Sbjct: 100 ggtgaggctcgcgtcaccatgcgcaagaccgcggcgaaagctaagcaagtttcctccagc 159

                                                 
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcgg 98
           ||||| ||||||||  |||| |||||||||||||||||
Sbjct: 160 agcccatggtacggagctgatcgtgtgctctacctcgg 197



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>emb|AJ635207.1| Triticum durum ssp. durum partial mRNA for putative chlorophyll a/b
           binding protein (cab gene)
          Length = 760

 Score = 83.8 bits (42), Expect = 9e-14
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                            
Query: 59  gcagcccgtggtacggctctgaccgtgtgctctacctcggnccgctttc 107
           ||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 135 gcagcccgtggtacggctctgaccgtgtgctctacctcggctcgctttc 183



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>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni
          Length = 312

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 53  cctccggcagcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||| ||||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 172 cctccagcagcccgtggtacggccccgaccgcgtgctctacctcggcccgct 223



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>emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlorophyll a/b binding
           protein
          Length = 869

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 54  ctccggcagcccgtggtacggctctgaccgtgtgctctacct 95
           |||||||||||||||||||||| | ||||| |||||||||||
Sbjct: 144 ctccggcagcccgtggtacggccccgaccgcgtgctctacct 185



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>ref|NM_191799.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 798

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 139 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 182



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>ref|NM_192636.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 789

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 127 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 170



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>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase
             IV-1 gene, complete cds
          Length = 15000

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 61    agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
             ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 14535 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 14492



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 61       agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
                ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 30024476 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 30024519



 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 61       agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
                ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 23603670 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 23603713



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>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0690B02
          Length = 153116

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 61    agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
             ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 20466 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 20509



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>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518F01
          Length = 154541

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 61    agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
             ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 66369 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 66412



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>dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J10, full
           insert sequence
          Length = 1180

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 198 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 241



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>dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full
           insert sequence
          Length = 1126

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 197 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 240



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>emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chlorophyll a/b-binding
           protein
          Length = 1442

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 624 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 667



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>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full
           insert sequence
          Length = 1055

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 220 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 263



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>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full
           insert sequence
          Length = 1055

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 220 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 263



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>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full
           insert sequence
          Length = 1057

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 222 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 265



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>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full
           insert sequence
          Length = 1057

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 222 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 265



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>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA,
           complete cds
          Length = 1022

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| |||||||||||||| |||||
Sbjct: 181 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 224



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>gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/b binding protein
           (CipLhcb1) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 975

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 41  ccaagcaggttgcctccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||| ||||||| ||||| ||||||||| | ||||||||
Sbjct: 171 ccaagcaggtttcctccggaagcccatggtacggcccagaccgtgt 216



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>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding
           protein
          Length = 1664

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 585 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 628



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 61       agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
                ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 10793123 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 10793166



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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 61    agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
             ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 16846 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 16889



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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 61     agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
              ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 129741 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 129784



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>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full
           insert sequence
          Length = 1013

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 191 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 234



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>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full
           insert sequence
          Length = 1021

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239



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>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full
           insert sequence
          Length = 1056

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 198 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 241



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>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full
           insert sequence
          Length = 1235

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239



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>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full
           insert sequence
          Length = 1045

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239



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>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I
           light-harvesting chlorophyll a/b binding protein of
           photosystem II (LHCPII), complete cds
          Length = 1022

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 61  agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104
           ||||||||||||||| | ||||| || ||||||||||| |||||
Sbjct: 177 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 220



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>gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
           40 mRNA, complete cds
          Length = 859

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 55  tccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||||||||||||| | ||||||||
Sbjct: 190 tccggcagcccgtggtacggcccggaccgtgt 221



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>ref|XM_426224.1| PREDICTED: Gallus gallus similar to transcription factor AP-2
           beta-like 1; AP-2 like; activating enhancer binding
           protein 2 beta-like 1; transcription factor AP-2 beta
           (activating enhancer-binding protein 2 beta)-like 1
           (LOC428666), mRNA
          Length = 1341

 Score = 44.1 bits (22), Expect = 0.078
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  ccggcagcccgtggtacggctc 77
           ||||||||||||||||||||||
Sbjct: 325 ccggcagcccgtggtacggctc 346



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>ref|NM_102733.2| Arabidopsis thaliana CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1);
           chlorophyll binding AT1G29930 (CAB1) mRNA, complete cds
          Length = 1044

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233



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>gb|AY389553.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
           (CAB) mRNA, partial cds
          Length = 720

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  tccggcagcccgtggtacggc 75
           |||||||||||||||||||||
Sbjct: 174 tccggcagcccgtggtacggc 194



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>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
          3C (LHCP) mRNA, partial cds
          Length = 661

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 55 tccggcagcccgtggtacggc 75
          |||||||||||||||||||||
Sbjct: 9  tccggcagcccgtggtacggc 29



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>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding
            protein
          Length = 2261

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 55   tccggcagcccgtggtacggctctgaccgtgtgctctacct 95
            ||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 1145 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 1185



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>gb|AY091169.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein
           (At1g29930) mRNA, complete cds
          Length = 835

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 139 ggcagcccatggtacggatctgaccgtgt 167



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>gb|AY050935.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b
           binding protein (At1g29930) mRNA, complete cds
          Length = 1014

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233



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>emb|AJ843976.1| Plantago major partial mRNA for light harvesting protein 1 (lhc1
          gene)
          Length = 688

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 59 gcagcccgtggtacggctctgaccg 83
          ||||||||||||||||| |||||||
Sbjct: 29 gcagcccgtggtacggccctgaccg 53



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>gb|AY058180.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds
          Length = 1019

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233



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>gb|AF428359.1|AF428359 Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds
          Length = 1045

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233



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>gb|AY045673.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds
          Length = 999

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233



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>emb|BX815726.1|CNS0ACD7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS89ZA03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 174 ggcagcccatggtacggatctgaccgtgt 202



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>emb|BX817619.1|CNS0AAVV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL33ZA06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 994

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 189 ggcagcccatggtacggatctgaccgtgt 217



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>gb|AC022455.5|AC022455 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence,
           complete sequence
          Length = 82053

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 85  ggcagcccatggtacggatctgaccgtgt 113



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>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete
             sequence
          Length = 101075

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 58    ggcagcccgtggtacggctctgaccgtgt 86
             |||||||| |||||||| |||||||||||
Sbjct: 16776 ggcagcccatggtacggatctgaccgtgt 16748



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>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein
           LHCP
          Length = 967

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 55  tccggcagcccgtggtacggctctgaccgtgtgctctacct 95
           ||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 197 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 237



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>emb|X03909.1|ATLHCP3 A.thaliana gene (LHCP AB 140) for chlorophyll a/b binding protein
          Length = 1109

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 58  ggcagcccgtggtacggctctgaccgtgt 86
           |||||||| |||||||| |||||||||||
Sbjct: 356 ggcagcccatggtacggatctgaccgtgt 384



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>gb|AY109324.1| Zea mays CL187_1 mRNA sequence
          Length = 2262

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 55   tccggcagcccgtggtacggctctgaccgtgtgctctacct 95
            ||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 1145 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 1185



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>gb|AY389573.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
           40 (LHCP) mRNA, partial cds
          Length = 712

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 55  tccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||| ||||||||| | ||||||||
Sbjct: 94  tccggcagcccctggtacggcccggaccgtgt 125



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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ggcaaaggccaagcaggttg 52
              ||||||||||||||||||||
Sbjct: 243119 ggcaaaggccaagcaggttg 243138



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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ggcaaaggccaagcaggttg 52
              ||||||||||||||||||||
Sbjct: 259095 ggcaaaggccaagcaggttg 259114



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>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds
          Length = 695

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 52 gcctccggcagcccgtggtacggc 75
          |||||||||||||| |||||||||
Sbjct: 41 gcctccggcagcccctggtacggc 64



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>gb|AF220527.1|AF220527 Euphorbia esula chlorophyll a/b binding protein precursor, mRNA,
           complete cds
          Length = 927

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 55  tccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||| ||||||||| | ||||||||
Sbjct: 142 tccggcagcccatggtacggcccagaccgtgt 173



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>gb|M16057.1|CUSLHCPA Cucumber LHCP mRNA encoding chlorophyll a/b-binding protein,
           partial cds
          Length = 878

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 55  tccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||||||||| ||  ||||||||||
Sbjct: 103 tccggcagcccgtggtatggtcctgaccgtgt 134



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>dbj|D78207.1|PHNCABBP Japanese morning glory mRNA for chlorophyl a/b binding protein,
           partial cds
          Length = 247

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 55  tccggcagcccgtggtacggctctgaccgtgt 86
           ||||||||||| ||||||||| | ||||||||
Sbjct: 182 tccggcagcccatggtacggcccagaccgtgt 213



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 54      ctccggcagcccgtggtac 72
               |||||||||||||||||||
Sbjct: 6728593 ctccggcagcccgtggtac 6728575



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>dbj|AB115771.1| Physcomitrella patens subsp. patens PpLhcb1 gene for
           light-harvesting chlorophyll a/b-binding protein 1,
           complete cds
          Length = 1975

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 5   aggctcgcgtcaccangcgcaa 26
           ||||||||||||||| ||||||
Sbjct: 762 aggctcgcgtcaccatgcgcaa 783


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,616
Number of Sequences: 3902068
Number of extensions: 286616
Number of successful extensions: 18680
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18566
Number of HSP's gapped (non-prelim): 114
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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