ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2n13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 Score = 105 bits (53), Expect = 2e-20 Identities = 84/95 (88%) Strand = Plus / Plus Query: 4 gaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggcagc 63 ||||| |||||||||| |||||| || | |||||||| ||||||||| ||||||||||| Sbjct: 94 gaggcccgcgtcaccatgcgcaagaccgcagcaaaggcaaagcaggtttcctccggcagc 153 Query: 64 ccgtggtacggctctgaccgtgtgctctacctcgg 98 || |||||||| |||||||||||||||||||||| Sbjct: 154 ccatggtacggtgctgaccgtgtgctctacctcgg 188
>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 Score = 95.6 bits (48), Expect = 2e-17 Identities = 87/101 (86%) Strand = Plus / Plus Query: 4 gaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggcagc 63 ||||| |||||||||| |||||| || | ||| |||||||||| ||| | ||||||||| Sbjct: 148 gaggcgcgcgtcaccatgcgcaagaccgcggccaaggccaagccggtgtcgtccggcagc 207 Query: 64 ccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||| || ||||| |||||||||||||| ||||| Sbjct: 208 ccgtggtacgggtccgaccgcgtgctctacctcggcccgct 248
>gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein gene, complete cds Length = 1191 Score = 91.7 bits (46), Expect = 4e-16 Identities = 48/49 (97%) Strand = Plus / Plus Query: 59 gcagcccgtggtacggctctgaccgtgtgctctacctcggnccgctttc 107 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 340 gcagcccgtggtacggctctgaccgtgtgctctacctcggcccgctttc 388
>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein Length = 934 Score = 87.7 bits (44), Expect = 6e-15 Identities = 84/98 (85%) Strand = Plus / Plus Query: 1 ggtgaggctcgcgtcaccangcgcaaaacggnggcaaaggccaagcaggttgcctccggc 60 ||||||||||||||||||| |||||| || | ||| || || ||||| ||| ||||| || Sbjct: 100 ggtgaggctcgcgtcaccatgcgcaagaccgcggcgaaagctaagcaagtttcctccagc 159 Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcgg 98 ||||| |||||||| |||| ||||||||||||||||| Sbjct: 160 agcccatggtacggagctgatcgtgtgctctacctcgg 197
>emb|AJ635207.1| Triticum durum ssp. durum partial mRNA for putative chlorophyll a/b binding protein (cab gene) Length = 760 Score = 83.8 bits (42), Expect = 9e-14 Identities = 47/49 (95%) Strand = Plus / Plus Query: 59 gcagcccgtggtacggctctgaccgtgtgctctacctcggnccgctttc 107 |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 135 gcagcccgtggtacggctctgaccgtgtgctctacctcggctcgctttc 183
>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni Length = 312 Score = 65.9 bits (33), Expect = 2e-08 Identities = 47/52 (90%) Strand = Plus / Plus Query: 53 cctccggcagcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||| ||||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 172 cctccagcagcccgtggtacggccccgaccgcgtgctctacctcggcccgct 223
>emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlorophyll a/b binding protein Length = 869 Score = 60.0 bits (30), Expect = 1e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 54 ctccggcagcccgtggtacggctctgaccgtgtgctctacct 95 |||||||||||||||||||||| | ||||| ||||||||||| Sbjct: 144 ctccggcagcccgtggtacggccccgaccgcgtgctctacct 185
>ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 139 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 182
>ref|NM_192636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 127 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 170
>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase IV-1 gene, complete cds Length = 15000 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Minus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 14535 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 14492
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 30024476 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 30024519 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 23603670 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 23603713
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 20466 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 20509
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 66369 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 66412
>dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J10, full insert sequence Length = 1180 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 198 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 241
>dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full insert sequence Length = 1126 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 197 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 240
>emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chlorophyll a/b-binding protein Length = 1442 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 624 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 667
>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full insert sequence Length = 1055 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 220 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 263
>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full insert sequence Length = 1055 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 220 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 263
>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full insert sequence Length = 1057 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 222 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 265
>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full insert sequence Length = 1057 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 222 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 265
>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds Length = 1022 Score = 58.0 bits (29), Expect = 5e-06 Identities = 40/44 (90%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct: 181 agcccgtggtacggcgccgaccgcgtgctctacctcggcccgct 224
>gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/b binding protein (CipLhcb1) mRNA, complete cds; nuclear gene for chloroplast product Length = 975 Score = 52.0 bits (26), Expect = 3e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 41 ccaagcaggttgcctccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||| ||||||| ||||| ||||||||| | |||||||| Sbjct: 171 ccaagcaggtttcctccggaagcccatggtacggcccagaccgtgt 216
>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding protein Length = 1664 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 585 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 628
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 10793123 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 10793166
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 16846 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 16889
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 129741 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 129784
>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full insert sequence Length = 1013 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 191 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 234
>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full insert sequence Length = 1021 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239
>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full insert sequence Length = 1056 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 198 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 241
>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full insert sequence Length = 1235 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239
>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full insert sequence Length = 1045 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 196 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 239
>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 1022 Score = 50.1 bits (25), Expect = 0.001 Identities = 39/44 (88%) Strand = Plus / Plus Query: 61 agcccgtggtacggctctgaccgtgtgctctacctcggnccgct 104 ||||||||||||||| | ||||| || ||||||||||| ||||| Sbjct: 177 agcccgtggtacggcgccgaccgcgtcctctacctcggcccgct 220
>gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 mRNA, complete cds Length = 859 Score = 48.1 bits (24), Expect = 0.005 Identities = 30/32 (93%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||||||||||||| | |||||||| Sbjct: 190 tccggcagcccgtggtacggcccggaccgtgt 221
>ref|XM_426224.1| PREDICTED: Gallus gallus similar to transcription factor AP-2 beta-like 1; AP-2 like; activating enhancer binding protein 2 beta-like 1; transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)-like 1 (LOC428666), mRNA Length = 1341 Score = 44.1 bits (22), Expect = 0.078 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ccggcagcccgtggtacggctc 77 |||||||||||||||||||||| Sbjct: 325 ccggcagcccgtggtacggctc 346
>ref|NM_102733.2| Arabidopsis thaliana CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding AT1G29930 (CAB1) mRNA, complete cds Length = 1044 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233
>gb|AY389553.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein (CAB) mRNA, partial cds Length = 720 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggc 75 ||||||||||||||||||||| Sbjct: 174 tccggcagcccgtggtacggc 194
>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 3C (LHCP) mRNA, partial cds Length = 661 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggc 75 ||||||||||||||||||||| Sbjct: 9 tccggcagcccgtggtacggc 29
>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding protein Length = 2261 Score = 42.1 bits (21), Expect = 0.31 Identities = 36/41 (87%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgtgctctacct 95 ||||| ||||||||||||||| | ||||| ||||| ||||| Sbjct: 1145 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 1185
>gb|AY091169.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein (At1g29930) mRNA, complete cds Length = 835 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 139 ggcagcccatggtacggatctgaccgtgt 167
>gb|AY050935.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At1g29930) mRNA, complete cds Length = 1014 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233
>emb|AJ843976.1| Plantago major partial mRNA for light harvesting protein 1 (lhc1 gene) Length = 688 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 gcagcccgtggtacggctctgaccg 83 ||||||||||||||||| ||||||| Sbjct: 29 gcagcccgtggtacggccctgaccg 53
>gb|AY058180.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 1019 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233
>gb|AF428359.1|AF428359 Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 1045 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233
>gb|AY045673.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 999 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 205 ggcagcccatggtacggatctgaccgtgt 233
>emb|BX815726.1|CNS0ACD7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 174 ggcagcccatggtacggatctgaccgtgt 202
>emb|BX817619.1|CNS0AAVV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 994 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 189 ggcagcccatggtacggatctgaccgtgt 217
>gb|AC022455.5|AC022455 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence Length = 82053 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 85 ggcagcccatggtacggatctgaccgtgt 113
>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence Length = 101075 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Minus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 16776 ggcagcccatggtacggatctgaccgtgt 16748
>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein LHCP Length = 967 Score = 42.1 bits (21), Expect = 0.31 Identities = 36/41 (87%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgtgctctacct 95 ||||| ||||||||||||||| | ||||| ||||| ||||| Sbjct: 197 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 237
>emb|X03909.1|ATLHCP3 A.thaliana gene (LHCP AB 140) for chlorophyll a/b binding protein Length = 1109 Score = 42.1 bits (21), Expect = 0.31 Identities = 27/29 (93%) Strand = Plus / Plus Query: 58 ggcagcccgtggtacggctctgaccgtgt 86 |||||||| |||||||| ||||||||||| Sbjct: 356 ggcagcccatggtacggatctgaccgtgt 384
>gb|AY109324.1| Zea mays CL187_1 mRNA sequence Length = 2262 Score = 42.1 bits (21), Expect = 0.31 Identities = 36/41 (87%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgtgctctacct 95 ||||| ||||||||||||||| | ||||| ||||| ||||| Sbjct: 1145 tccgggagcccgtggtacggccccgaccgcgtgctgtacct 1185
>gb|AY389573.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 (LHCP) mRNA, partial cds Length = 712 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||| ||||||||| | |||||||| Sbjct: 94 tccggcagcccctggtacggcccggaccgtgt 125
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ggcaaaggccaagcaggttg 52 |||||||||||||||||||| Sbjct: 243119 ggcaaaggccaagcaggttg 243138
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ggcaaaggccaagcaggttg 52 |||||||||||||||||||| Sbjct: 259095 ggcaaaggccaagcaggttg 259114
>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds Length = 695 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 gcctccggcagcccgtggtacggc 75 |||||||||||||| ||||||||| Sbjct: 41 gcctccggcagcccctggtacggc 64
>gb|AF220527.1|AF220527 Euphorbia esula chlorophyll a/b binding protein precursor, mRNA, complete cds Length = 927 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||| ||||||||| | |||||||| Sbjct: 142 tccggcagcccatggtacggcccagaccgtgt 173
>gb|M16057.1|CUSLHCPA Cucumber LHCP mRNA encoding chlorophyll a/b-binding protein, partial cds Length = 878 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||||||||| || |||||||||| Sbjct: 103 tccggcagcccgtggtatggtcctgaccgtgt 134
>dbj|D78207.1|PHNCABBP Japanese morning glory mRNA for chlorophyl a/b binding protein, partial cds Length = 247 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 55 tccggcagcccgtggtacggctctgaccgtgt 86 ||||||||||| ||||||||| | |||||||| Sbjct: 182 tccggcagcccatggtacggcccagaccgtgt 213
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 ctccggcagcccgtggtac 72 ||||||||||||||||||| Sbjct: 6728593 ctccggcagcccgtggtac 6728575
>dbj|AB115771.1| Physcomitrella patens subsp. patens PpLhcb1 gene for light-harvesting chlorophyll a/b-binding protein 1, complete cds Length = 1975 Score = 38.2 bits (19), Expect = 4.8 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 aggctcgcgtcaccangcgcaa 26 ||||||||||||||| |||||| Sbjct: 762 aggctcgcgtcaccatgcgcaa 783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 286,616 Number of Sequences: 3902068 Number of extensions: 286616 Number of successful extensions: 18680 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18566 Number of HSP's gapped (non-prelim): 114 length of query: 107 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 86 effective length of database: 17,151,101,840 effective search space: 1474994758240 effective search space used: 1474994758240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
