Clone Name | basd2n10 |
---|---|
Clone Library Name | barley_pub |
>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B| (IFB) Length = 450 Score = 33.9 bits (76), Expect = 0.48 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +1 Query: 478 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 648 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 92 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 150 Query: 649 DPLAHLKSAL 678 D +A L+ + Sbjct: 151 DEIASLRELI 160
>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein| (IF) Length = 575 Score = 33.9 bits (76), Expect = 0.48 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = +1 Query: 478 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 648 ++ QVK A+ + NR+ +P+RD ++ LAQ + VIDE + K +SE + + Sbjct: 93 LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 151 Query: 649 DPLAHLKSAL 678 D +A L+ + Sbjct: 152 DEIASLRELI 161
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -2 Query: 248 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 84 +TTS G G P +G LRP + P G G + + P GD KP Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545
>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 31.6 bits (70), Expect = 2.4 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = -1 Query: 366 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 187 R K +S FGT+ + V VD++ P K T F+ D++ + Sbjct: 70 RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126 Query: 186 GHGGRETLWER 154 G G ET W+R Sbjct: 127 GLPGEETYWQR 137
>Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618| Length = 198 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Frame = -1 Query: 525 VNVRCISMAILYLNIN---PERVQFLMDSCIMQVLVIVQH-DNIPILISVSENEVSIRAK 358 V++ ++ AI + +N P VQ L + ++ +LVI QH NI LI+ +E+++ RA+ Sbjct: 137 VSLGSMTGAITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196 Query: 357 LK 352 +K Sbjct: 197 IK 198
>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 482 Score = 30.4 bits (67), Expect = 5.3 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +1 Query: 469 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 648 PLR+ + ++ A+ I+R+D+ K D L I+ + E +K I E LR+ A E Sbjct: 351 PLRVEIGPRDLEKGAAVISRRDTGEKVTAD-----LQGIEETLRELMKDILENLRTRAWE 405 Query: 649 DPLAHLKSA--LDEAMK 693 + ++ A L+EA + Sbjct: 406 RMESEIREAETLEEASR 422
>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)| Length = 483 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +1 Query: 469 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 648 P ++ + AS Q+ P+P + QDP A S + A KP EP + + Sbjct: 21 PAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP--EP---PSED 75 Query: 649 DPLAHLKSALDE 684 P A L+ L++ Sbjct: 76 VPSAPLRLTLED 87
>YOX1_YEAST (P34161) Homeobox protein YOX1| Length = 385 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Frame = +1 Query: 454 HQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVID----EALKPIS 621 H LN +K S A H+N Q PV+ + + ++ + ID +A +P+S Sbjct: 294 HHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVS 353 Query: 622 EPLRSTARE 648 P S R+ Sbjct: 354 NPSGSPKRK 362
>TCPD_CAEEL (P47208) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 540 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = +1 Query: 463 LNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA 642 L+P+ +++N+HA+ + + R V D ++ + Q V A+K SE +RS Sbjct: 471 LSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSIL 530 Query: 643 REDPL 657 + D + Sbjct: 531 KIDDI 535
>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC| 2.5.1.48) (O-succinylhomoserine (thiol)-lyase) Length = 575 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +1 Query: 265 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 381 D+LK F G NGT+FTL A S++ KFG D + I Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,328,035 Number of Sequences: 219361 Number of extensions: 1435187 Number of successful extensions: 5334 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5334 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)