>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B|
           (IFB)
          Length = 450

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +1

Query: 478 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 648
           ++ QVK   A+   + NR+    +P+RD  ++ LAQ + VIDE  + K +SE  +    +
Sbjct: 92  LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 150

Query: 649 DPLAHLKSAL 678
           D +A L+  +
Sbjct: 151 DEIASLRELI 160

>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein|
           (IF)
          Length = 575

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +1

Query: 478 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 648
           ++ QVK   A+   + NR+    +P+RD  ++ LAQ + VIDE  + K +SE  +    +
Sbjct: 93  LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 151

Query: 649 DPLAHLKSAL 678
           D +A L+  +
Sbjct: 152 DEIASLRELI 161

>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 248 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 84
           +TTS G G    P +G  LRP   +  P G  G  +    +   P GD     KP
Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545

>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)|
          Length = 319

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 366 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 187
           R K +S   FGT+   +   V  VD++  P K  T F+ D++                + 
Sbjct: 70  RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126

Query: 186 GHGGRETLWER 154
           G  G ET W+R
Sbjct: 127 GLPGEETYWQR 137

>Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618|
          Length = 198

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
 Frame = -1

Query: 525 VNVRCISMAILYLNIN---PERVQFLMDSCIMQVLVIVQH-DNIPILISVSENEVSIRAK 358
           V++  ++ AI +  +N   P  VQ L  + ++ +LVI QH  NI  LI+ +E+++  RA+
Sbjct: 137 VSLGSMTGAITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196

Query: 357 LK 352
           +K
Sbjct: 197 IK 198

>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 482

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +1

Query: 469 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 648
           PLR+ +  ++    A+ I+R+D+  K   D     L  I+  + E +K I E LR+ A E
Sbjct: 351 PLRVEIGPRDLEKGAAVISRRDTGEKVTAD-----LQGIEETLRELMKDILENLRTRAWE 405

Query: 649 DPLAHLKSA--LDEAMK 693
              + ++ A  L+EA +
Sbjct: 406 RMESEIREAETLEEASR 422

>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)|
          Length = 483

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 469 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 648
           P ++     +    AS    Q+  P+P +   QDP A   S +  A KP  EP    + +
Sbjct: 21  PAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP--EP---PSED 75

Query: 649 DPLAHLKSALDE 684
            P A L+  L++
Sbjct: 76  VPSAPLRLTLED 87

>YOX1_YEAST (P34161) Homeobox protein YOX1|
          Length = 385

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 454 HQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVID----EALKPIS 621
           H  LN       +K S A   H+N Q     PV+ +    + ++ + ID    +A +P+S
Sbjct: 294 HHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVS 353

Query: 622 EPLRSTARE 648
            P  S  R+
Sbjct: 354 NPSGSPKRK 362

>TCPD_CAEEL (P47208) T-complex protein 1 subunit delta (TCP-1-delta)|
           (CCT-delta)
          Length = 540

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 463 LNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA 642
           L+P+    +++N+HA+ +     + R   V D  ++ + Q   V   A+K  SE +RS  
Sbjct: 471 LSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSIL 530

Query: 643 REDPL 657
           + D +
Sbjct: 531 KIDDI 535

>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 575

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 381
           D+LK F G  NGT+FTL       A  S++    KFG D + I
Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,328,035
Number of Sequences: 219361
Number of extensions: 1435187
Number of successful extensions: 5334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5334
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)