Clone Name | basd2n08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477069.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 371 bits (187), Expect = 2e-99 Identities = 316/358 (88%), Gaps = 1/358 (0%) Strand = Plus / Plus Query: 13 atggagttggagctgcacttaatgtcc-tgagggcccgcagngcataagctatcgatatg 71 ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 1775 atggagttggagctgcactaaatgtccatgagggccctcagagcataagctatcgatatg 1834 Query: 72 gaaacttgacagctttacagaagggcatgattgtaagcaatgaacctggttattatgaag 131 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 1835 gaaatttgacagctttacagaagggcatgatcgtaagcaatgagcctggttattacgaag 1894 Query: 132 acaattcatttggcattcgtatcgagaatctgcttctggtgaaggaggttaatttagcca 191 ||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| | | Sbjct: 1895 acaattcctttggcattcgtatagagaatcttcttctggtcaaagaggttaatttgccaa 1954 Query: 192 attcttttggcggcatctcatacctgggctttgagaaactaacttttgttccgattcaga 251 |||| ||||| ||| |||| ||||| || ||||| ||| ||||||||||||| ||||||| Sbjct: 1955 attcgtttggtggcgtctcgtaccttggttttgaaaaattaacttttgttccaattcaga 2014 Query: 252 gaaagcttattgacttacccttgctatcacctttggagataaattgggtcaatgagtacc 311 | |||||| |||| || |||| |||||||||| |||||| |||||| ||||||| |||| Sbjct: 2015 gcaagcttgttgatttgtccttactatcaccttcggagatcaattggatcaatgaatacc 2074 Query: 312 atgaagaagtttgggaaaaggtttcccctttcttgagtggcaatcctcgcaactggct 369 |||| ||||| |||||||||||||||||||| ||||||||| || ||| | ||||||| Sbjct: 2075 atgacgaagtctgggaaaaggtttcccctttgttgagtggccattctctcgactggct 2132
>dbj|AK120553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130G17, full insert sequence Length = 2691 Score = 371 bits (187), Expect = 2e-99 Identities = 316/358 (88%), Gaps = 1/358 (0%) Strand = Plus / Plus Query: 13 atggagttggagctgcacttaatgtcc-tgagggcccgcagngcataagctatcgatatg 71 ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 1842 atggagttggagctgcactaaatgtccatgagggccctcagagcataagctatcgatatg 1901 Query: 72 gaaacttgacagctttacagaagggcatgattgtaagcaatgaacctggttattatgaag 131 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 1902 gaaatttgacagctttacagaagggcatgatcgtaagcaatgagcctggttattacgaag 1961 Query: 132 acaattcatttggcattcgtatcgagaatctgcttctggtgaaggaggttaatttagcca 191 ||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| | | Sbjct: 1962 acaattcctttggcattcgtatagagaatcttcttctggtcaaagaggttaatttgccaa 2021 Query: 192 attcttttggcggcatctcatacctgggctttgagaaactaacttttgttccgattcaga 251 |||| ||||| ||| |||| ||||| || ||||| ||| ||||||||||||| ||||||| Sbjct: 2022 attcgtttggtggcgtctcgtaccttggttttgaaaaattaacttttgttccaattcaga 2081 Query: 252 gaaagcttattgacttacccttgctatcacctttggagataaattgggtcaatgagtacc 311 | |||||| |||| || |||| |||||||||| |||||| |||||| ||||||| |||| Sbjct: 2082 gcaagcttgttgatttgtccttactatcaccttcggagatcaattggatcaatgaatacc 2141 Query: 312 atgaagaagtttgggaaaaggtttcccctttcttgagtggcaatcctcgcaactggct 369 |||| ||||| |||||||||||||||||||| ||||||||| || ||| | ||||||| Sbjct: 2142 atgacgaagtctgggaaaaggtttcccctttgttgagtggccattctctcgactggct 2199
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 204 bits (103), Expect = 3e-49 Identities = 133/142 (93%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 13 atggagttggagctgcacttaatgtcc-tgagggcccgcagngcataagctatcgatatg 71 ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 5725920 atggagttggagctgcactaaatgtccatgagggccctcagagcataagctatcgatatg 5725861 Query: 72 gaaacttgacagctttacagaagggcatgattgtaagcaatgaacctggttattatgaag 131 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 5725860 gaaatttgacagctttacagaagggcatgatcgtaagcaatgagcctggttattacgaag 5725801 Query: 132 acaattcatttggcattcgtat 153 ||||||| |||||||||||||| Sbjct: 5725800 acaattcctttggcattcgtat 5725779 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 246 ttcagagaaagcttattgacttacccttgctatcacctttggagataaattgggtcaatg 305 ||||||| |||||| |||| || |||| |||||||||| |||||| |||||| |||||| Sbjct: 5725314 ttcagagcaagcttgttgatttgtccttactatcaccttcggagatcaattggatcaatg 5725255 Query: 306 agtaccatgaagaagtttgggaaaaggt 333 | |||||||| ||||| ||||||||||| Sbjct: 5725254 aataccatgacgaagtctgggaaaaggt 5725227 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 156 agaatctgcttctggtgaaggaggttaatttagccaattcttttggcggcatctcatacc 215 ||||||| |||||||| || ||||||||||| | ||||| ||||| ||| |||| |||| Sbjct: 5725658 agaatcttcttctggtcaaagaggttaatttgccaaattcgtttggtggcgtctcgtacc 5725599 Query: 216 tgggctttgagaaactaacttttgttccgattcag 250 | || ||||| ||| ||||||||||||| |||||| Sbjct: 5725598 ttggttttgaaaaattaacttttgttccaattcag 5725564 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 330 aggtttcccctttcttgagtggcaatcctcgcaactggct 369 ||||||||||||| ||||||||| || ||| | ||||||| Sbjct: 5724650 aggtttcccctttgttgagtggccattctctcgactggct 5724611
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 204 bits (103), Expect = 3e-49 Identities = 133/142 (93%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 13 atggagttggagctgcacttaatgtcc-tgagggcccgcagngcataagctatcgatatg 71 ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 32948 atggagttggagctgcactaaatgtccatgagggccctcagagcataagctatcgatatg 32889 Query: 72 gaaacttgacagctttacagaagggcatgattgtaagcaatgaacctggttattatgaag 131 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct: 32888 gaaatttgacagctttacagaagggcatgatcgtaagcaatgagcctggttattacgaag 32829 Query: 132 acaattcatttggcattcgtat 153 ||||||| |||||||||||||| Sbjct: 32828 acaattcctttggcattcgtat 32807 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 246 ttcagagaaagcttattgacttacccttgctatcacctttggagataaattgggtcaatg 305 ||||||| |||||| |||| || |||| |||||||||| |||||| |||||| |||||| Sbjct: 32342 ttcagagcaagcttgttgatttgtccttactatcaccttcggagatcaattggatcaatg 32283 Query: 306 agtaccatgaagaagtttgggaaaaggt 333 | |||||||| ||||| ||||||||||| Sbjct: 32282 aataccatgacgaagtctgggaaaaggt 32255 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 156 agaatctgcttctggtgaaggaggttaatttagccaattcttttggcggcatctcatacc 215 ||||||| |||||||| || ||||||||||| | ||||| ||||| ||| |||| |||| Sbjct: 32686 agaatcttcttctggtcaaagaggttaatttgccaaattcgtttggtggcgtctcgtacc 32627 Query: 216 tgggctttgagaaactaacttttgttccgattcag 250 | || ||||| ||| ||||||||||||| |||||| Sbjct: 32626 ttggttttgaaaaattaacttttgttccaattcag 32592 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 330 aggtttcccctttcttgagtggcaatcctcgcaactggct 369 ||||||||||||| ||||||||| || ||| | ||||||| Sbjct: 31678 aggtttcccctttgttgagtggccattctctcgactggct 31639
>ref|NM_111408.3| Arabidopsis thaliana aminopeptidase/ metalloexopeptidase AT3G05350 mRNA, complete cds Length = 1947 Score = 73.8 bits (37), Expect = 7e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcgtatc 154 |||||||| ||||||||||||||||| |||||||||||| || ||||||| || || || Sbjct: 1496 ggcatgatagtaagcaatgaacctggatattatgaagaccatgcatttgggatccgaatt 1555 Query: 155 gagaatctgcttc 167 |||||||| |||| Sbjct: 1556 gagaatctccttc 1568
>gb|BT001080.1| Arabidopsis thaliana At3g05350/T12H1_32 mRNA, complete cds Length = 2133 Score = 73.8 bits (37), Expect = 7e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcgtatc 154 |||||||| ||||||||||||||||| |||||||||||| || ||||||| || || || Sbjct: 1822 ggcatgatagtaagcaatgaacctggatattatgaagaccatgcatttgggatccgaatt 1881 Query: 155 gagaatctgcttc 167 |||||||| |||| Sbjct: 1882 gagaatctccttc 1894
>gb|AY079018.1| Arabidopsis thaliana AT3g05350/T12H1_32 mRNA, complete cds Length = 2298 Score = 73.8 bits (37), Expect = 7e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcgtatc 154 |||||||| ||||||||||||||||| |||||||||||| || ||||||| || || || Sbjct: 1846 ggcatgatagtaagcaatgaacctggatattatgaagaccatgcatttgggatccgaatt 1905 Query: 155 gagaatctgcttc 167 |||||||| |||| Sbjct: 1906 gagaatctccttc 1918
>gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete sequence Length = 140639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcg 150 |||||||||||||||||||||||||| |||||||||||| || | || |||||||| Sbjct: 6521 ggcatgattgtaagcaatgaacctggctattatgaagaccatgctttcggcattcg 6466
>gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete sequence Length = 120194 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcg 150 |||||||||||||||||||||||||| |||||||||||| || | || |||||||| Sbjct: 95780 ggcatgattgtaagcaatgaacctggctattatgaagaccatgctttcggcattcg 95725
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttgg 144 |||||||| ||||||||||||||||| |||||||||||| || ||||||| Sbjct: 123834 ggcatgatagtaagcaatgaacctggatattatgaagaccatgcatttgg 123785
>dbj|AB236853.1| Trifolium pratense RNA for putative DNA-damage-repair/toleration protein DRT102, complete cds, clone: C669 Length = 3563 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 95 ggcatgattgtaagcaatgaacctggttattatgaagacaattcatttggcattcg 150 ||||||||||| |||||||| |||||||||||||||||| || | || |||||||| Sbjct: 2079 ggcatgattgttagcaatgagcctggttattatgaagaccatgccttcggcattcg 2134
>emb|AL133359.1|SPAPJ696 S.pombe chromosome I PCR product p696 Length = 5404 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 106 aagcaatgaacctggttattatgaaga 132 ||||||||||||||||| ||||||||| Sbjct: 4964 aagcaatgaacctggtttttatgaaga 4938
>ref|NM_001018448.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC22G7.01c), partial mRNA Length = 1797 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 106 aagcaatgaacctggttattatgaaga 132 ||||||||||||||||| ||||||||| Sbjct: 1509 aagcaatgaacctggtttttatgaaga 1535
>emb|AJ308541.1|LES308541 Lycopersicon esculentum mRNA for Xaa-Pro aminopeptidase 1 (app1 gene) Length = 2198 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 atgaacctggttattatgaagac 133 ||||||||||||||||||||||| Sbjct: 1745 atgaacctggttattatgaagac 1767
>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3, complete sequence Length = 159132 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 421 aaagcaacaaaaaagagcaattc 443 ||||||||||||||||||||||| Sbjct: 3322 aaagcaacaaaaaagagcaattc 3344
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 atcgagaatctgcttctggtga 173 |||||||||||||||||||||| Sbjct: 1959513 atcgagaatctgcttctggtga 1959534
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 480 acgatggcaaggccgaaggcat 501 |||||||||||||||||||||| Sbjct: 2355240 acgatggcaaggccgaaggcat 2355219
>ref|NM_128404.1| Arabidopsis thaliana unknown protein AT2G28440 mRNA, complete cds Length = 807 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gagaatctgcttctggtgaag 175 ||||||||||||||||||||| Sbjct: 346 gagaatctgcttctggtgaag 326
>gb|AY868979.1| Uncultured alpha proteobacterium clone I3K-0178 16S ribosomal RNA gene, partial sequence Length = 452 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 catcttcatttgccatcggtt 598 ||||||||||||||||||||| Sbjct: 25 catcttcatttgccatcggtt 45
>gb|AC122477.5| Mus musculus BAC clone RP24-336L24 from chromosome 14, complete sequence Length = 158605 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 tgagaaactaacttttgttcc 243 ||||||||||||||||||||| Sbjct: 32686 tgagaaactaacttttgttcc 32666
>gb|AC151835.4| Mus musculus BAC clone RP23-333J1 from chromosome 14, complete sequence Length = 215551 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 tgagaaactaacttttgttcc 243 ||||||||||||||||||||| Sbjct: 82910 tgagaaactaacttttgttcc 82930
>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the 3' end of the Col23a1 gene for procollagen (type XXIII, alpha 1), the 5' end of a novel gene and a CpG island, complete sequence Length = 155917 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 acaaaaagcaacaaaaaagag 437 ||||||||||||||||||||| Sbjct: 92429 acaaaaagcaacaaaaaagag 92409
>gb|DQ056548.1| Arabidopsis thaliana proline-rich family protein (At2g28440) mRNA, complete cds Length = 807 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gagaatctgcttctggtgaag 175 ||||||||||||||||||||| Sbjct: 346 gagaatctgcttctggtgaag 326
>gb|AC006283.6| Arabidopsis thaliana chromosome 2 clone T1B3 map mi54, complete sequence Length = 93122 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gagaatctgcttctggtgaag 175 ||||||||||||||||||||| Sbjct: 8936 gagaatctgcttctggtgaag 8956
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 taccatgaagaagtttgggaa 328 ||||||||||||||||||||| Sbjct: 16342291 taccatgaagaagtttgggaa 16342271
>gb|AY190944.1| Drosophila pseudoobscura clone DPSF01_8_E17 (D1422) genomic sequence Length = 42627 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 gttggagctgcacttaatgtcctga 42 ||||| ||||||||||||||||||| Sbjct: 1319 gttggcgctgcacttaatgtcctga 1343
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0046G12 Length = 189391 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 taccatgaagaagtttgggaa 328 ||||||||||||||||||||| Sbjct: 30838 taccatgaagaagtttgggaa 30818
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 taccatgaagaagtttgggaa 328 ||||||||||||||||||||| Sbjct: 158807 taccatgaagaagtttgggaa 158787
>dbj|AP000789.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-725K16, complete sequence Length = 195874 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 taccatgaagaagtttgggaa 328 ||||||||||||||||||||| Sbjct: 60049 taccatgaagaagtttgggaa 60029
>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence Length = 182101 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 cagcaagtattcacttcttgg 463 ||||||||||||||||||||| Sbjct: 133880 cagcaagtattcacttcttgg 133860
>gb|AC132225.3| Mus musculus BAC clone RP24-558H21 from 3, complete sequence Length = 189301 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 cagcaagtattcacttcttgg 463 ||||||||||||||||||||| Sbjct: 2079 cagcaagtattcacttcttgg 2059
>gb|AC005065.1| Homo sapiens BAC clone CTB-114B19 from 7, complete sequence Length = 83928 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 acaaaaagcaacaaaaaagagcaa 440 |||||||||||||||||| ||||| Sbjct: 16371 acaaaaagcaacaaaaaaaagcaa 16348
>emb|CR376724.12| Zebrafish DNA sequence from clone DKEY-174A16 in linkage group 3, complete sequence Length = 168199 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 attatgaagacaattcattt 142 |||||||||||||||||||| Sbjct: 123325 attatgaagacaattcattt 123344
>gb|AC024158.5| Homo sapiens chromosome 3 clone RP11-245A6 map 3p, complete sequence Length = 162042 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 ttattatgaagacaattcatttgg 144 ||||||| |||||||||||||||| Sbjct: 90820 ttattatcaagacaattcatttgg 90797
>gb|AC125224.3| Mus musculus BAC clone RP23-33N8 from 17, complete sequence Length = 195968 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 aaaaagcaacaaaaaagagcaatt 442 ||||| |||||||||||||||||| Sbjct: 27380 aaaaaacaacaaaaaagagcaatt 27357
>emb|CR847503.8| Zebrafish DNA sequence from clone DKEY-20D21 in linkage group 8, complete sequence Length = 217514 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 attatgaagacaattcattt 142 |||||||||||||||||||| Sbjct: 142522 attatgaagacaattcattt 142503
>emb|AL645820.1| Human DNA sequence from clone RP1-138O17 on chromosome X, complete sequence Length = 125787 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 6627 gaatctgcttctggtgaagg 6608
>emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chromosome X Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene and a chaperonin containing TCP1, subunit 4 (delta) (CCT4) pseudogene, complete sequence Length = 157946 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 acaaaaagcaacaaaaaaga 436 |||||||||||||||||||| Sbjct: 18568 acaaaaagcaacaaaaaaga 18549
>emb|AL138878.10| Human DNA sequence from clone RP11-288G3 on chromosome 6 Contains the 3' end of the RIOK1 gene for RIO kinase 1 (yeast), a hetergeneous riboprotein L (HNRNP L) pseudogene, a ribosomal protein S26 pseudogene and a isocitrate dehydrogenase 1 (IDH1) pseudogene, complete sequence Length = 128320 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 91432 gaatctgcttctggtgaagg 91413
>gb|DQ088854.1| Uncultured bacterium eBACmed18B02 probable aminopeptidase and predicted DNA helicase II genes, complete cds Length = 3894 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 ggcatgattgtaagcaatgaacctggtt 122 ||||||||| |||| ||||||||||||| Sbjct: 919 ggcatgattttaagtaatgaacctggtt 892
>emb|CR388175.9| Zebrafish DNA sequence from clone DKEY-63B1 in linkage group 20, complete sequence Length = 207204 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 aagtttgggaaaaggtttcc 337 |||||||||||||||||||| Sbjct: 197234 aagtttgggaaaaggtttcc 197253
>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 48064 gaatctgcttctggtgaagg 48045
>gb|AC112713.3| Homo sapiens BAC clone RP11-175H11 from 4, complete sequence Length = 114398 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 614 catggatagttctgtttggtcttt 637 ||||||||| |||||||||||||| Sbjct: 42425 catggatagctctgtttggtcttt 42448
>gb|AC021561.8| Homo sapiens chromosome 18, clone RP11-766D3, complete sequence Length = 174508 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 166302 gaatctgcttctggtgaagg 166283
>gb|DQ103595.1| Arabidopsis arenosa clone BAC 28N14, complete sequence Length = 132056 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 39624 gaatctgcttctggtgaagg 39643
>gb|DQ103594.1| Capsella rubella clone BAC 8F1, complete sequence Length = 83679 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 19841 gaatctgcttctggtgaagg 19860
>ref|XM_936260.1| PREDICTED: Homo sapiens hypothetical protein LOC642117 (LOC642117), mRNA Length = 213 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 186 gaatctgcttctggtgaagg 205
>ref|XM_926850.1| PREDICTED: Homo sapiens hypothetical protein LOC643545 (LOC643545), mRNA Length = 213 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 186 gaatctgcttctggtgaagg 205
>gb|AC095015.1| Drosophila melanogaster, chromosome 3R, region 84A-84B, BAC clone BACR32J03, complete sequence Length = 190642 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 gttggagctgcacttaatgtcctg 41 ||||| |||||||||||||||||| Sbjct: 72203 gttggcgctgcacttaatgtcctg 72180
>gb|AF001905.1|AF001905 Homo sapiens cosmids E079, B0920 and A8 from Xq25 X-linked lymphoproliferative disease gene candidate region, complete sequence Length = 197620 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 119161 gaatctgcttctggtgaagg 119180
>gb|AC158511.2| Mus musculus BAC clone RP24-242G2 from chromosome 13, complete sequence Length = 143388 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 acaaaaagcaacaaaaaaga 436 |||||||||||||||||||| Sbjct: 106220 acaaaaagcaacaaaaaaga 106201
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence Length = 429825 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 gttggagctgcacttaatgtcctg 41 ||||| |||||||||||||||||| Sbjct: 151589 gttggcgctgcacttaatgtcctg 151612
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 caacatgacaaaaagcaacaaaaa 433 ||||||||||||||||| |||||| Sbjct: 21248887 caacatgacaaaaagcagcaaaaa 21248864
>gb|AC090669.9| Homo sapiens 12 BAC RP11-780K2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113027 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 agaatctgcttctggtgaag 175 |||||||||||||||||||| Sbjct: 12398 agaatctgcttctggtgaag 12379
>gb|AY190938.1| Drosophila erecta clone DERF01_37_F17 (D1421) genomic sequence Length = 44340 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 gttggagctgcacttaatgtcctg 41 ||||| |||||||||||||||||| Sbjct: 1410 gttggcgctgcacttaatgtcctg 1433
>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185405 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 gctatcgatatggaaacttgacag 83 ||||||||||| |||||||||||| Sbjct: 108003 gctatcgatattgaaacttgacag 107980
>gb|AC016562.7| Homo sapiens chromosome 5 clone CTC-484A9, complete sequence Length = 185774 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 agaatctgcttctggtgaag 175 |||||||||||||||||||| Sbjct: 84198 agaatctgcttctggtgaag 84179
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 caacatgacaaaaagcaacaaaaa 433 ||||||||||||||||| |||||| Sbjct: 44263 caacatgacaaaaagcagcaaaaa 44240
>emb|CR391988.6| Zebrafish DNA sequence from clone CH211-107O23 in linkage group 18, complete sequence Length = 60360 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gctttgagaaactaactttt 238 |||||||||||||||||||| Sbjct: 2507 gctttgagaaactaactttt 2526
>emb|BX901926.19| Zebrafish DNA sequence from clone CH211-195N20 in linkage group 1, complete sequence Length = 204799 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgacaaaaagcaacaaaaaa 434 |||||||||||||||||||| Sbjct: 129063 tgacaaaaagcaacaaaaaa 129082
>gb|AE003673.3| Drosophila melanogaster chromosome 3R, section 11 of 118 of the complete sequence Length = 308146 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 gttggagctgcacttaatgtcctg 41 ||||| |||||||||||||||||| Sbjct: 127063 gttggcgctgcacttaatgtcctg 127040
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 gctatcgatatggaaacttgacag 83 ||||||||||| |||||||||||| Sbjct: 225048 gctatcgatattgaaacttgacag 225025
>gb|AC005549.1|AC005549 Homo sapiens chromosome 17, clone hRPK.215_E_13, complete sequence Length = 147416 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 atttgcatacatcttcattt 588 |||||||||||||||||||| Sbjct: 138363 atttgcatacatcttcattt 138344
>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete sequence Length = 117646 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ggttgaagctggtttatttt 522 |||||||||||||||||||| Sbjct: 24571 ggttgaagctggtttatttt 24552
>emb|CT030664.5| Mouse DNA sequence from clone RP23-357K7 on chromosome 13, complete sequence Length = 192064 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 acaaaaagcaacaaaaaaga 436 |||||||||||||||||||| Sbjct: 164897 acaaaaagcaacaaaaaaga 164878
>gb|AC124737.5| Mus musculus BAC clone RP23-330K22 from 13, complete sequence Length = 188023 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 acaaaaagcaacaaaaaaga 436 |||||||||||||||||||| Sbjct: 163308 acaaaaagcaacaaaaaaga 163327
>emb|CT009635.18| Mouse DNA sequence from clone RP23-109E18 on chromosome 17, complete sequence Length = 216634 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 aaaaagcaacaaaaaagagcaatt 442 ||||| |||||||||||||||||| Sbjct: 64465 aaaaaacaacaaaaaagagcaatt 64488
>gb|AC001656.1|DMAC001656 Drosophila melanogaster (P1 DS00397 (D18)) DNA sequence, complete sequence Length = 3773 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 gttggagctgcacttaatgtcctg 41 ||||| |||||||||||||||||| Sbjct: 886 gttggcgctgcacttaatgtcctg 863
>dbj|AP004499.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16N13, TM0031, complete sequence Length = 97191 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 acaaaaagcaacaaaaaagagcaa 440 ||||||||||||||| |||||||| Sbjct: 21197 acaaaaagcaacaaagaagagcaa 21220
>emb|Z72519.1|HSJ13817A Human DNA sequence from cosmid J138O17, between markers DXS6791 and DXS8038 on chromosome X contains EST CA repeat and an endogenous retroviral like element Length = 125787 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 119161 gaatctgcttctggtgaagg 119180
>emb|AL390025.1| Human DNA sequence from clone RP3-336K20 on chromosome 6 Contains a pseudogene similar to hetergeneous riboprotein L (HNRNP L), to Ribosomal protein S26, a pseudogene similar to isocitrate dehydrogenase (NADP+), STSs and GSSs, complete sequence Length = 52747 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gaatctgcttctggtgaagg 176 |||||||||||||||||||| Sbjct: 15847 gaatctgcttctggtgaagg 15828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,414,437 Number of Sequences: 3902068 Number of extensions: 6414437 Number of successful extensions: 125652 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125370 Number of HSP's gapped (non-prelim): 278 length of query: 701 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 678 effective length of database: 17,143,297,704 effective search space: 11623155843312 effective search space used: 11623155843312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)