ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2n06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_754008.1| Ustilago maydis 521 hypothetical protein (UM029... 38 1.9
2gb|AY841792.1| Triticum aestivum cysteine protease (CP) mRNA, co... 36 7.5
3gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 36 7.5
4gb|AF034211.1| Desulfovibrio vulgaris vulgaris insertion sequenc... 36 7.5

>ref|XM_754008.1| Ustilago maydis 521 hypothetical protein (UM02954.1) partial mRNA
          Length = 5052

 Score = 38.2 bits (19), Expect = 1.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  gtggaaggccaagttcggg 31
           |||||||||||||||||||
Sbjct: 169 gtggaaggccaagttcggg 151



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>gb|AY841792.1| Triticum aestivum cysteine protease (CP) mRNA, complete cds
          Length = 1525

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 25  gttcgggaagacctacag 42
           ||||||||||||||||||
Sbjct: 270 gttcgggaagacctacag 287



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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 13      gtggaaggccaagttcgg 30
               ||||||||||||||||||
Sbjct: 2090111 gtggaaggccaagttcgg 2090094



 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     gtggaaggccaagttcgg 30
              ||||||||||||||||||
Sbjct: 628507 gtggaaggccaagttcgg 628524



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>gb|AF034211.1| Desulfovibrio vulgaris vulgaris insertion sequence ISD1 transposase
           gene, complete cds
          Length = 1208

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 13  gtggaaggccaagttcgg 30
           ||||||||||||||||||
Sbjct: 196 gtggaaggccaagttcgg 213


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 166,675
Number of Sequences: 3902068
Number of extensions: 166675
Number of successful extensions: 47359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47323
Number of HSP's gapped (non-prelim): 36
length of query: 54
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 34
effective length of database: 17,155,003,908
effective search space: 583270132872
effective search space used: 583270132872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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