Clone Name
basd3c05
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AY106217.1| Zea mays PCO093522 mRNA sequence
333
3e-88
2 dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clon...
313
3e-82
3 dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clon...
313
3e-82
4 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
176
4e-41
5 dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D...
176
4e-41
6 dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic D...
176
4e-41
7 gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence
88
3e-14
8 gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gen...
44
0.38
9 gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
42
1.5
10 emb|BX055800.1|CNS09F7W Single read from an extremity of a full-...
42
1.5
11 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.5
12 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
42
1.5
13 emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...
42
1.5
14 emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb...
42
1.5
15 dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...
42
1.5
16 ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) ...
40
5.9
17 gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC),...
40
5.9
18 gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge...
40
5.9
19 ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM007...
40
5.9
20 ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical ...
40
5.9
21 gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC...
40
5.9
22 gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATP...
40
5.9
23 gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complet...
40
5.9
24 gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of...
40
5.9
25 emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Co...
40
5.9
26 emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Co...
40
5.9
27 emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Co...
40
5.9
28 emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Co...
40
5.9
29 gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13...
40
5.9
30 gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete ...
40
5.9
31 dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
40
5.9
32 dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
40
5.9
33 dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
40
5.9
>gb| AY106217.1 | Zea mays PCO093522 mRNA sequence
Length = 679
Score = 333 bits (168), Expect = 3e-88
Identities = 305/351 (86%), Gaps = 6/351 (1%)
Strand = Plus / Plus
Query: 96 gatgaccatcatcatcgaccagactcagttcgatgcggcggcggagaggaaggtcgcc-- 153
|||||| |||| ||| || ||| | ||| ||||||||| |||||||||||| ||| ||
Sbjct: 115 gatgacgatcaccattgaacagccccagctcgatgcggtggcggagaggaaagtccccgg 174
Query: 154 ----ggggacccgggggagctcgtgctcgacggcggcttcaccgtgccggattccaacgc 209
|| ||||| | |||||| |||||||||| ||||||| ||||||||| |||||||
Sbjct: 175 cggaggtgaccccgcggagctggtgctcgacgccggcttcgtcgtgccggacgccaacgc 234
Query: 210 cttcggccacaccttcagggactacgacgcggagtcggagcggaagaagacggtggagga 269
||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 235 cttcggcaataccttcagggactacgacgcggagtcggagcggaagcagacggtagagga 294
Query: 270 gttctaccgcgtgaaccacatcagccagacgtacgagttcgtgcggcggatgcgggacgc 329
||||||||| ||||||||| | || |||||| ||||||||||| ||||||||||| |
Sbjct: 295 gttctaccgggtgaaccacgtgaggcagacgcacgagttcgtggcgcggatgcgggcgga 354
Query: 330 gtacgcgcggctggacaggacggagatgagcatctgggagtgcatcgagctgctcaacga 389
||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 355 gtacgggcggctggacaagacggagatgggcatctgggagtgcatcgagctgctgaacga 414
Query: 390 gttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacct 440
||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 415 gttcatcgacgacagcgacccggacctggacatgccccagatcgagcacct 465
>dbj| AK103977.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full
insert sequence
Length = 1288
Score = 313 bits (158), Expect = 3e-82
Identities = 248/278 (89%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 266 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 325
Query: 225 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 284
|||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 326 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 385
Query: 285 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 344
|||||||| |||||| || || |||||| ||||||||||||| | ||||| || ||||
Sbjct: 386 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 445
Query: 345 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 404
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 505
Query: 405 cgaccccgacctcgacatgccgcagatcgagcacctcc 442
|||||| |||||||||||||||||||||||||||||||
Sbjct: 506 cgacccggacctcgacatgccgcagatcgagcacctcc 543
>dbj| AK068862.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full
insert sequence
Length = 1289
Score = 313 bits (158), Expect = 3e-82
Identities = 248/278 (89%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 267 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 326
Query: 225 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 284
|||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 327 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 386
Query: 285 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 344
|||||||| |||||| || || |||||| ||||||||||||| | ||||| || ||||
Sbjct: 387 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 446
Query: 345 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 404
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 506
Query: 405 cgaccccgacctcgacatgccgcagatcgagcacctcc 442
|||||| |||||||||||||||||||||||||||||||
Sbjct: 507 cgacccggacctcgacatgccgcagatcgagcacctcc 544
>dbj| AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 176 bits (89), Expect = 4e-41
Identities = 119/129 (92%)
Strand = Plus / Plus
Query: 314 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
||||||||||||| | ||||| || |||||| |||||||||| | |||||||||||||
Sbjct: 21132448 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 21132507
Query: 374 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21132508 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 21132567
Query: 434 agcacctcc 442
|||||||||
Sbjct: 21132568 agcacctcc 21132576
Score = 87.7 bits (44), Expect = 3e-14
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 21131065 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 21131124
Query: 225 cagg 228
||||
Sbjct: 21131125 cagg 21131128
Score = 69.9 bits (35), Expect = 7e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 241 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 21132241 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 21132299
>dbj| AP003762.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0456F09
Length = 141336
Score = 176 bits (89), Expect = 4e-41
Identities = 119/129 (92%)
Strand = Plus / Plus
Query: 314 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
||||||||||||| | ||||| || |||||| |||||||||| | |||||||||||||
Sbjct: 31109 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 31168
Query: 374 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31169 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 31228
Query: 434 agcacctcc 442
|||||||||
Sbjct: 31229 agcacctcc 31237
Score = 87.7 bits (44), Expect = 3e-14
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 29726 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 29785
Query: 225 cagg 228
||||
Sbjct: 29786 cagg 29789
Score = 69.9 bits (35), Expect = 7e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 241 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 30902 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 30960
>dbj| AP003713.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528E12
Length = 139750
Score = 176 bits (89), Expect = 4e-41
Identities = 119/129 (92%)
Strand = Plus / Plus
Query: 314 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 373
||||||||||||| | ||||| || |||||| |||||||||| | |||||||||||||
Sbjct: 129449 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 129508
Query: 374 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129509 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 129568
Query: 434 agcacctcc 442
|||||||||
Sbjct: 129569 agcacctcc 129577
Score = 87.7 bits (44), Expect = 3e-14
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 224
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 128066 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 128125
Query: 225 cagg 228
||||
Sbjct: 128126 cagg 128129
Score = 69.9 bits (35), Expect = 7e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 241 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 299
||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 129242 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 129300
>gb| BT018941.1 | Zea mays clone Contig87.F mRNA sequence
Length = 783
Score = 87.7 bits (44), Expect = 3e-14
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 385 aacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacct 440
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 775 aacgagttcatcgacgacagcgacccggacctggacatgccccagatcgagcacct 720
>gb| DQ324854.1 | Azospirillum brasilense putative anti-sigma E gene, complete cds
Length = 696
Score = 44.1 bits (22), Expect = 0.38
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 172 gtgctcgacggcggcttcaccg 193
||||||||||||||||||||||
Sbjct: 508 gtgctcgacggcggcttcaccg 529
>gb| CP000152.1 | Burkholderia sp. 383 chromosome 2, complete sequence
Length = 3587082
Score = 42.1 bits (21), Expect = 1.5
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 165 ggagctcgtgctcgacggcggcttcaccg 193
|||||||||| ||||||||||||| ||||
Sbjct: 1658588 ggagctcgtgatcgacggcggctttaccg 1658616
>emb| BX055800.1 |CNS09F7W Single read from an extremity of a full-length cDNA clone made from
Anopheles gambiae total adult females. 3-PRIME end of
clone FK0AAC34CC07 of strain 6-9 of Anopheles gambiae
(African malaria mosquito)
Length = 641
Score = 42.1 bits (21), Expect = 1.5
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 102 catcatcatcgaccagactcagttc 126
||||||||||||||||| |||||||
Sbjct: 414 catcatcatcgaccagaatcagttc 438
>dbj| AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 1.5
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 ctccgccgctctcgctgccgcgaga 64
|||||||||||| ||||||||||||
Sbjct: 10056850 ctccgccgctcttgctgccgcgaga 10056826
>gb| DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 1.5
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 ctccgccgctctcgctgccgcgaga 64
|||||||||||| ||||||||||||
Sbjct: 10056735 ctccgccgctcttgctgccgcgaga 10056711
>emb| AL731739.4 |CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 145890
Score = 42.1 bits (21), Expect = 1.5
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 ctccgccgctctcgctgccgcgaga 64
|||||||||||| ||||||||||||
Sbjct: 105771 ctccgccgctcttgctgccgcgaga 105795
>emb| AL732642.4 |CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 132906
Score = 42.1 bits (21), Expect = 1.5
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 ctccgccgctctcgctgccgcgaga 64
|||||||||||| ||||||||||||
Sbjct: 1224 ctccgccgctcttgctgccgcgaga 1248
>dbj| AP006840.1 | Symbiobacterium thermophilum IAM 14863 DNA, complete genome
Length = 3566135
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 255 gaagacggtggaggagttcta 275
|||||||||||||||||||||
Sbjct: 3065647 gaagacggtggaggagttcta 3065627
>ref| NM_111903.1 | Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds
Length = 1350
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 67 gcggaagaagacggtggagg 48
>gb| DQ022656.1 | Azospirillum brasilense OxyR (oxyR), AhpC (ahpC), and AhpF (ahpF)
genes, complete cds; and oxidoreductase gene, partial cds
Length = 4471
Score = 40.1 bits (20), Expect = 5.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 389 agttcatcgacgacagcgaccccgacct 416
|||||||||||| ||||||| |||||||
Sbjct: 1444 agttcatcgacgtcagcgacgccgacct 1471
>gb| AY261359.1 | Bovine herpesvirus 5 strain SV507/99, complete genome
Length = 138390
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 324 ggacgcgtacgcgcggctgg 343
||||||||||||||||||||
Sbjct: 33662 ggacgcgtacgcgcggctgg 33681
>ref| XM_751823.1 | Ustilago maydis 521 hypothetical protein (UM00769.1) partial mRNA
Length = 993
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 tgcatcgagctgctcaacga 389
||||||||||||||||||||
Sbjct: 307 tgcatcgagctgctcaacga 326
>ref| XM_382977.1 | Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02801.1)
partial mRNA
Length = 2130
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ggcggcggagaggaaggtcg 151
||||||||||||||||||||
Sbjct: 1629 ggcggcggagaggaaggtcg 1610
>gb| AC011708.8 |ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 79087 gcggaagaagacggtggagg 79068
>gb| AY035125.1 | Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
mRNA, complete cds
Length = 1368
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 67 gcggaagaagacggtggagg 48
>gb| AC175207.2 | Sporobolomyces roseus clone JGIBAIF-9L20, complete sequence
Length = 36012
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 251 ggaagaagacggtggaggag 270
||||||||||||||||||||
Sbjct: 29296 ggaagaagacggtggaggag 29277
>gb| AE005984.1 | Caulobacter crescentus CB15 section 310 of 359 of the complete genome
Length = 10212
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcgatgcggcggcggagagg 144
||||||||||||||||||||
Sbjct: 5804 tcgatgcggcggcggagagg 5785
>emb| BX822291.1 |CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB26ZH03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 54 gcggaagaagacggtggagg 35
>emb| BX824893.1 |CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1303
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 52 gcggaagaagacggtggagg 33
>emb| BX824371.1 |CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1276
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 52 gcggaagaagacggtggagg 33
>emb| BX823288.1 |CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS1ZF02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1311
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 53 gcggaagaagacggtggagg 34
>gb| AC011560.6 |AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
sequence
Length = 118107
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 10036 gcggaagaagacggtggagg 10017
>gb| AY085010.1 | Arabidopsis thaliana clone 124334 mRNA, complete sequence
Length = 1350
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gcggaagaagacggtggagg 268
||||||||||||||||||||
Sbjct: 67 gcggaagaagacggtggagg 48
>dbj| BA000045.2 | Gloeobacter violaceus PCC 7421 DNA, complete genome
Length = 4659019
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 176 tcgacggcggcttcaccgtg 195
||||||||||||||||||||
Sbjct: 4447233 tcgacggcggcttcaccgtg 4447214
>dbj| BA000012.4 | Mesorhizobium loti MAFF303099 DNA, complete genome
Length = 7036071
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 ctcgacggcggcttcaccgt 194
||||||||||||||||||||
Sbjct: 1339723 ctcgacggcggcttcaccgt 1339704
>dbj| AP006627.1 | Bacillus clausii KSM-K16 DNA, complete genome
Length = 4303871
Score = 40.1 bits (20), Expect = 5.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 377 agctgctcaacgagttcatc 396
||||||||||||||||||||
Sbjct: 1933990 agctgctcaacgagttcatc 1933971
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,444,983
Number of Sequences: 3902068
Number of extensions: 2444983
Number of successful extensions: 56912
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56381
Number of HSP's gapped (non-prelim): 531
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)