ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3b23 |
|---|---|
| Clone Library Name | barley_pub |
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1199 Score = 33.9 bits (76), Expect = 0.34 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP+G Sbjct: 99 QIHFEGSGAQVMGPMG 114
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 33.5 bits (75), Expect = 0.45 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP+G Sbjct: 99 QIHFKGSGAQIVGPMG 114
>TRY1_CHICK (Q90627) Trypsin I-P1 precursor (EC 3.4.21.4)| Length = 248 Score = 33.5 bits (75), Expect = 0.45 Identities = 28/103 (27%), Positives = 44/103 (42%) Frame = +3 Query: 177 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 356 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 357 TSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEEPQLSSAYK 485 ++M I +GG + QG GG + G G+ + A K Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGIGCAQK 225
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRHLLTKLKA 103 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_FLV (P10273) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT)] (Fragment) Length = 128 Score = 32.7 bits (73), Expect = 0.76 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G + L+ G++ K+ + G +THSF+ EC P GR LLT ++A Sbjct: 43 GPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPEC-PYPLLGRDLLTKLKA 101 Query: 372 IMRDSGGNCNLQGPIG 419 + +G N+ GP G Sbjct: 102 QIHFTGEGANVVGPRG 117
>TRY2_CHICK (Q90628) Trypsin I-P38 precursor (EC 3.4.21.4)| Length = 248 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/92 (28%), Positives = 40/92 (43%) Frame = +3 Query: 177 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 356 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 357 TSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSG 452 ++M I +GG + QG GG + G G Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPVVCNGQLQG 214
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 198 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 371 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 372 IMRDSGGNCNLQGPIG 419 + G + GP G Sbjct: 99 QIHFEGSGAQVVGPKG 114
>DHE3_DROME (P54385) Glutamate dehydrogenase, mitochondrial precursor (EC| 1.4.1.3) (GDH) Length = 562 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = +3 Query: 213 QAVLISGSSNGKS-----------NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLLT 359 QA +I+ ++NG + N+ V+P+ Y G +T SF ++ +YGRL Sbjct: 389 QAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRL-- 446 Query: 360 SMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEE 461 + N +L + SI R+ N V+E Sbjct: 447 ---TFKYERESNYHLLASVQQSIERIINDESVQE 477
>PURL_AGRT5 (Q8UEB0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 775 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +3 Query: 354 LTSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEEPQLSSAYK 485 L +RA + +G +C L G GGS ++G VE +L AY+ Sbjct: 716 LDKVRAAAKAAGVSCPLIGTTGGSTVKLGTARAVEIKELHLAYE 759 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,170,537 Number of Sequences: 219361 Number of extensions: 1018341 Number of successful extensions: 3046 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3046 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
