ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease in... 924 0.0
2gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown funct... 351 2e-93
3gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-r... 339 6e-90
4gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds 96 1e-16
5gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown funct... 94 6e-16
6gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sa... 52 0.002
7ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
10gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal R... 42 1.9
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
12dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
14emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, st... 42 1.9
15emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on ch... 42 1.9
16ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha ... 40 7.5
17gb|AC023280.26| Homo sapiens 12 BAC RP11-833E18 (Roswell Park Ca... 40 7.5
18gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosom... 40 7.5
19gb|AC073621.20| Homo sapiens chromosome 17, clone CTD-3073J20, c... 40 7.5
20gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chrom... 40 7.5
21dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.5
22gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene... 40 7.5
23dbj|AP000841.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 7.5
24gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.5
25gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, comp... 40 7.5
26dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 7.5
27dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 7.5
28emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chr... 40 7.5 
>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  924 bits (466), Expect = 0.0
 Identities = 494/500 (98%), Gaps = 5/500 (1%)
 Strand = Plus / Plus

                                                                       
Query: 37  catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60

                                                                       
Query: 97  tcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgca 156
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61  tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120

                                                                       
Query: 157 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180

                                                                       
Query: 217 cggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcca 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcca 240

                                                                       
Query: 277 ccgtcgacggcacctgcggcgggccatgcaagaagtactgatcggctcaggctcacatga 336
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 ccgtcgacggcacctgcggcgggccatgcaagaagtactgatc-gctcaggctcacatga 299

                                                                       
Query: 337 gactattgttccgcttggcgcctaaaataaaagctcggatgagatgaccggactcatctt 396
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gactattgtt-cgcttggcgcctaaaataaaagctcggatgagatgaccggactcatctt 358

                                                                       
Query: 397 gcctatgcgtgtgtgtgtggc---caacaatatgtatactgttccgtcgtgtctttgtca 453
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcctatgcgtgtgtgtgtggccaacaacaatatgtatactgttccgtcgtgtctttgtca 418

                                                                       
Query: 454 ccgtggtttctttctcgagaaatatcccccgtgaatattgtgcgtgtctactcaataaca 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccgtggtttctttctcgagaaatatcccccgtgaatattgtgcgtgtctactcaataaca 478

                               
Query: 514 tgaatattacttgtatttat 533
           ||||||||||||||||||||
Sbjct: 479 tgaatattacttgtatttat 498
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>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  351 bits (177), Expect = 2e-93
 Identities = 286/321 (89%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcacaagcgaagtgagagcttttgcacgaggagttcatcagcaaccatgaagggcacca 60
           ||||| || |||||||||||||| ||||||  | |||||||| |||||||||||||||||
Sbjct: 27  cgcacgagtgaagtgagagcttt-gcacgaaaacttcatcagaaaccatgaagggcacca 85

                                                                       
Query: 61  agctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtga 120
           ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 86  agctcgcggcgatcctgatcctccaggccgtcctggtcatgggactcctctcacacgtga 145

                                                                       
Query: 121 acgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtct 180
           ||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 146 acgccgattttttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtct 205

                                                                       
Query: 181 gcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgcgtggtgaccacga 240
           ||||||||||||| ||  |||| |||   |||||||||||||||||||||||| | ||||
Sbjct: 206 gcgacgacgcccaccccaagtgtccccagggctgctcggcgtgccgcgtggtgtcgacga 265

                                                                       
Query: 241 acccccagacgttccgctgcgccgacatgaaagccaccgtcgacggcacctgcggcgggc 300
            |||| | | ||  |||||||| || |||||| |||||||||||||||||||||| || |
Sbjct: 266 gccccgaaatgtggcgctgcgcggatatgaaatccaccgtcgacggcacctgcggtggac 325

                                
Query: 301 catgcaagaagtactgatcgg 321
           | |||||||||||||||||||
Sbjct: 326 cctgcaagaagtactgatcgg 346



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 359 taaaataaaagctcggatgagatgaccggactcatcttgcctatgcgtgtgtgtgtggcc 418
           |||||||||||||| |  ||||||| | |  ||||| |||||||||||||||||||||||
Sbjct: 378 taaaataaaagctcaggcgagatgagcagcgtcatcgtgcctatgcgtgtgtgtgtggcc 437

                 
Query: 419 aacaat 424
           ||||||
Sbjct: 438 aacaat 443
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>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  339 bits (171), Expect = 6e-90
 Identities = 260/289 (89%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 34  gttcatcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcc 93
           |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 73  gttcatcagcaagcatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcc 132

                                                                       
Query: 94  tggtcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaact 153
           ||||||||||  ||||||| ||||||||||||||||  ||||||| ||||||||||||||
Sbjct: 133 tggtcatggggatcctctcacacgtgaacgccgacttcttccccaagtgctgcaacaact 192

                                                                       
Query: 154 gcaggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggct 213
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||||
Sbjct: 193 gcaggtccttctccggggtcgacgtctgcgacgacgcccacccccagtgccccaagggct 252

                                                                       
Query: 214 gctcggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatga 270
           ||||||| ||||||||||||||  | | |||   | |||||||||| |||||||||||||
Sbjct: 253 gctcggcctgccgcgtggtgacgcccagccctcacaagacgttccggtgcgccgacatga 312

                                                            
Query: 271 aagccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatc 319
           |   ||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 313 agagcaccgtcgatggcacctgcggcgggccatgcaaaaagcactgatc 361



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 ggccaacaatatgtatactg 434
           ||||||||||||||||||||
Sbjct: 463 ggccaacaatatgtatactg 482
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>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 110/130 (84%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 62  gctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaa 121
           ||||| |||||| ||||| |||||||||||||||||||||||| ||||||| || | |||
Sbjct: 90  gctcgtggcgatcctgattctccaggccgtcctggtcatgggaatcctctcacaggcgaa 149

                                                                       
Query: 122 cgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctg 181
           |||||   | ||||| |  |||||| |||||||||||| |||||| |||| ||  |||||
Sbjct: 150 cgccg---agttcccgaaatgctgcgacaactgcaggttcttctcgggggccgtggtctg 206

                     
Query: 182 cgacgacgcc 191
           ||||||||||
Sbjct: 207 cgacgacgcc 216
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>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 100/117 (85%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 75  ctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaacgccgactatttc 134
           |||||||| ||||||||||||||||||||| ||||||| || | ||||||||   | |||
Sbjct: 82  ctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccg---agttc 138

                                                                    
Query: 135 cccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctgcgacgacgcc 191
           |||| ||||||| |||||||||||| |||||| |||| ||  |||||||| ||||||
Sbjct: 139 cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195
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>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 79    tcctccaggccgtcctggtcatgggagtcctctc 112
             ||||||||||| |||||||||||||| |||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctc 71843



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 200   gtgccccaccggctgctcggcgtgccgc 227
             ||||||| ||||||||||||||||||||
Sbjct: 72072 gtgccccgccggctgctcggcgtgccgc 72099
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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 81  ctccaggccgtcctggtcatggg 103
           |||||||||||||||||||||||
Sbjct: 34  ctccaggccgtcctggtcatggg 56
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 81      ctccaggccgtcctggtcatggg 103
               |||||||||||||||||||||||
Sbjct: 1757697 ctccaggccgtcctggtcatggg 1757675
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 81     ctccaggccgtcctggtcatggg 103
              |||||||||||||||||||||||
Sbjct: 100040 ctccaggccgtcctggtcatggg 100018
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>gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal RNA gene, partial
           sequence
          Length = 518

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 caggtccttctccggggtcga 175
           |||||||||||||||||||||
Sbjct: 156 caggtccttctccggggtcga 176
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 406     tgtgtgtgtggccaacaatat 426
               |||||||||||||||||||||
Sbjct: 1152429 tgtgtgtgtggccaacaatat 1152449
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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0660D08
          Length = 146915

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    tgtgtgtgtggccaacaatat 426
              |||||||||||||||||||||
Sbjct: 128652 tgtgtgtgtggccaacaatat 128672
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>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0542E10
          Length = 146196

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 406  tgtgtgtgtggccaacaatat 426
            |||||||||||||||||||||
Sbjct: 4382 tgtgtgtgtggccaacaatat 4402
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>emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, strain C99
          Length = 421

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 155 caggtccttctccggggtcga 175
           |||||||||||||||||||||
Sbjct: 343 caggtccttctccggggtcga 323
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>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete
              sequence
          Length = 190641

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 93     ctggtcatgggagtcctctcg 113
              |||||||||||||||||||||
Sbjct: 102410 ctggtcatgggagtcctctcg 102390
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>ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA
          Length = 4920

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  ccgcagtgccccaccggctg 214
            ||||||||||||||||||||
Sbjct: 4690 ccgcagtgccccaccggctg 4709
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>gb|AC023280.26| Homo sapiens 12 BAC RP11-833E18 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 25605

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 510  aacatgaatattacttgtat 529
            ||||||||||||||||||||
Sbjct: 9748 aacatgaatattacttgtat 9729
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>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete
             sequence
          Length = 178904

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   tgcctatgcgtgtgtgtgtg 415
             ||||||||||||||||||||
Sbjct: 63274 tgcctatgcgtgtgtgtgtg 63255
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>gb|AC073621.20| Homo sapiens chromosome 17, clone CTD-3073J20, complete sequence
          Length = 141048

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    tgcctatgcgtgtgtgtgtg 415
              ||||||||||||||||||||
Sbjct: 109702 tgcctatgcgtgtgtgtgtg 109683
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>gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chromosome unknown,
             complete sequence
          Length = 172771

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   tatgcgtgtgtgtgtggcca 419
             ||||||||||||||||||||
Sbjct: 67874 tatgcgtgtgtgtgtggcca 67893
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    gttccgctgcgccgacatga 270
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692
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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  gttccgctgcgccgacatga 270
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347
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>dbj|AP000841.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-89J9, complete
             sequence
          Length = 103177

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   tgcctatgcgtgtgtgtgtg 415
             ||||||||||||||||||||
Sbjct: 15070 tgcctatgcgtgtgtgtgtg 15051
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    ccggctgctcggcgtgccgc 227
              ||||||||||||||||||||
Sbjct: 369417 ccggctgctcggcgtgccgc 369398
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>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence
          Length = 176325

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    tgcctatgcgtgtgtgtgtg 415
              ||||||||||||||||||||
Sbjct: 134621 tgcctatgcgtgtgtgtgtg 134602
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>dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-215C1, complete
              sequences
          Length = 150724

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    tgcctatgcgtgtgtgtgtg 415
              ||||||||||||||||||||
Sbjct: 127465 tgcctatgcgtgtgtgtgtg 127484
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>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete
            sequences
          Length = 172173

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  tgcctatgcgtgtgtgtgtg 415
            ||||||||||||||||||||
Sbjct: 9236 tgcctatgcgtgtgtgtgtg 9255
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>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete
              sequence
          Length = 174638

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    tgcctatgcgtgtgtgtgtg 415
              ||||||||||||||||||||
Sbjct: 113003 tgcctatgcgtgtgtgtgtg 112984


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,263,820
Number of Sequences: 3902068
Number of extensions: 13263820
Number of successful extensions: 133641
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133393
Number of HSP's gapped (non-prelim): 242
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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