Clone Name | basd2m22 |
---|---|
Clone Library Name | barley_pub |
>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor Length = 498 Score = 924 bits (466), Expect = 0.0 Identities = 494/500 (98%), Gaps = 5/500 (1%) Strand = Plus / Plus Query: 37 catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 96 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60 Query: 97 tcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgca 156 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120 Query: 157 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180 Query: 217 cggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcca 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcca 240 Query: 277 ccgtcgacggcacctgcggcgggccatgcaagaagtactgatcggctcaggctcacatga 336 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 241 ccgtcgacggcacctgcggcgggccatgcaagaagtactgatc-gctcaggctcacatga 299 Query: 337 gactattgttccgcttggcgcctaaaataaaagctcggatgagatgaccggactcatctt 396 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 gactattgtt-cgcttggcgcctaaaataaaagctcggatgagatgaccggactcatctt 358 Query: 397 gcctatgcgtgtgtgtgtggc---caacaatatgtatactgttccgtcgtgtctttgtca 453 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 359 gcctatgcgtgtgtgtgtggccaacaacaatatgtatactgttccgtcgtgtctttgtca 418 Query: 454 ccgtggtttctttctcgagaaatatcccccgtgaatattgtgcgtgtctactcaataaca 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 ccgtggtttctttctcgagaaatatcccccgtgaatattgtgcgtgtctactcaataaca 478 Query: 514 tgaatattacttgtatttat 533 |||||||||||||||||||| Sbjct: 479 tgaatattacttgtatttat 498
>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA, complete cds Length = 520 Score = 351 bits (177), Expect = 2e-93 Identities = 286/321 (89%), Gaps = 1/321 (0%) Strand = Plus / Plus Query: 1 cgcacaagcgaagtgagagcttttgcacgaggagttcatcagcaaccatgaagggcacca 60 ||||| || |||||||||||||| |||||| | |||||||| ||||||||||||||||| Sbjct: 27 cgcacgagtgaagtgagagcttt-gcacgaaaacttcatcagaaaccatgaagggcacca 85 Query: 61 agctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtga 120 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 86 agctcgcggcgatcctgatcctccaggccgtcctggtcatgggactcctctcacacgtga 145 Query: 121 acgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtct 180 ||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 146 acgccgattttttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtct 205 Query: 181 gcgacgacgcccatccgcagtgccccaccggctgctcggcgtgccgcgtggtgaccacga 240 ||||||||||||| || |||| ||| |||||||||||||||||||||||| | |||| Sbjct: 206 gcgacgacgcccaccccaagtgtccccagggctgctcggcgtgccgcgtggtgtcgacga 265 Query: 241 acccccagacgttccgctgcgccgacatgaaagccaccgtcgacggcacctgcggcgggc 300 |||| | | || |||||||| || |||||| |||||||||||||||||||||| || | Sbjct: 266 gccccgaaatgtggcgctgcgcggatatgaaatccaccgtcgacggcacctgcggtggac 325 Query: 301 catgcaagaagtactgatcgg 321 | ||||||||||||||||||| Sbjct: 326 cctgcaagaagtactgatcgg 346 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 359 taaaataaaagctcggatgagatgaccggactcatcttgcctatgcgtgtgtgtgtggcc 418 |||||||||||||| | ||||||| | | ||||| ||||||||||||||||||||||| Sbjct: 378 taaaataaaagctcaggcgagatgagcagcgtcatcgtgcctatgcgtgtgtgtgtggcc 437 Query: 419 aacaat 424 |||||| Sbjct: 438 aacaat 443
>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein (wrsi5-1) mRNA, complete cds Length = 608 Score = 339 bits (171), Expect = 6e-90 Identities = 260/289 (89%), Gaps = 3/289 (1%) Strand = Plus / Plus Query: 34 gttcatcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcc 93 |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct: 73 gttcatcagcaagcatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcc 132 Query: 94 tggtcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaact 153 |||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||| Sbjct: 133 tggtcatggggatcctctcacacgtgaacgccgacttcttccccaagtgctgcaacaact 192 Query: 154 gcaggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggct 213 |||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| Sbjct: 193 gcaggtccttctccggggtcgacgtctgcgacgacgcccacccccagtgccccaagggct 252 Query: 214 gctcggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatga 270 ||||||| |||||||||||||| | | ||| | |||||||||| ||||||||||||| Sbjct: 253 gctcggcctgccgcgtggtgacgcccagccctcacaagacgttccggtgcgccgacatga 312 Query: 271 aagccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatc 319 | ||||||||| ||||||||||||||||||||||| ||| ||||||| Sbjct: 313 agagcaccgtcgatggcacctgcggcgggccatgcaaaaagcactgatc 361 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ggccaacaatatgtatactg 434 |||||||||||||||||||| Sbjct: 463 ggccaacaatatgtatactg 482
>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds Length = 585 Score = 95.6 bits (48), Expect = 1e-16 Identities = 110/130 (84%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 62 gctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaa 121 ||||| |||||| ||||| |||||||||||||||||||||||| ||||||| || | ||| Sbjct: 90 gctcgtggcgatcctgattctccaggccgtcctggtcatgggaatcctctcacaggcgaa 149 Query: 122 cgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctg 181 ||||| | ||||| | |||||| |||||||||||| |||||| |||| || ||||| Sbjct: 150 cgccg---agttcccgaaatgctgcgacaactgcaggttcttctcgggggccgtggtctg 206 Query: 182 cgacgacgcc 191 |||||||||| Sbjct: 207 cgacgacgcc 216
>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA, complete cds Length = 564 Score = 93.7 bits (47), Expect = 6e-16 Identities = 100/117 (85%), Gaps = 3/117 (2%) Strand = Plus / Plus Query: 75 ctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaacgccgactatttc 134 |||||||| ||||||||||||||||||||| ||||||| || | |||||||| | ||| Sbjct: 82 ctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccg---agttc 138 Query: 135 cccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctgcgacgacgcc 191 |||| ||||||| |||||||||||| |||||| |||| || |||||||| |||||| Sbjct: 139 cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 79 tcctccaggccgtcctggtcatgggagtcctctc 112 ||||||||||| |||||||||||||| ||||||| Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctc 71843 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 gtgccccaccggctgctcggcgtgccgc 227 ||||||| |||||||||||||||||||| Sbjct: 72072 gtgccccgccggctgctcggcgtgccgc 72099
>ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 306 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 81 ctccaggccgtcctggtcatggg 103 ||||||||||||||||||||||| Sbjct: 34 ctccaggccgtcctggtcatggg 56
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 81 ctccaggccgtcctggtcatggg 103 ||||||||||||||||||||||| Sbjct: 1757697 ctccaggccgtcctggtcatggg 1757675
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 81 ctccaggccgtcctggtcatggg 103 ||||||||||||||||||||||| Sbjct: 100040 ctccaggccgtcctggtcatggg 100018
>gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal RNA gene, partial sequence Length = 518 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 caggtccttctccggggtcga 175 ||||||||||||||||||||| Sbjct: 156 caggtccttctccggggtcga 176
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tgtgtgtgtggccaacaatat 426 ||||||||||||||||||||| Sbjct: 1152429 tgtgtgtgtggccaacaatat 1152449
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tgtgtgtgtggccaacaatat 426 ||||||||||||||||||||| Sbjct: 128652 tgtgtgtgtggccaacaatat 128672
>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0542E10 Length = 146196 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tgtgtgtgtggccaacaatat 426 ||||||||||||||||||||| Sbjct: 4382 tgtgtgtgtggccaacaatat 4402
>emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, strain C99 Length = 421 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 caggtccttctccggggtcga 175 ||||||||||||||||||||| Sbjct: 343 caggtccttctccggggtcga 323
>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete sequence Length = 190641 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ctggtcatgggagtcctctcg 113 ||||||||||||||||||||| Sbjct: 102410 ctggtcatgggagtcctctcg 102390
>ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA Length = 4920 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccgcagtgccccaccggctg 214 |||||||||||||||||||| Sbjct: 4690 ccgcagtgccccaccggctg 4709
>gb|AC023280.26| Homo sapiens 12 BAC RP11-833E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 25605 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 aacatgaatattacttgtat 529 |||||||||||||||||||| Sbjct: 9748 aacatgaatattacttgtat 9729
>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete sequence Length = 178904 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 63274 tgcctatgcgtgtgtgtgtg 63255
>gb|AC073621.20| Homo sapiens chromosome 17, clone CTD-3073J20, complete sequence Length = 141048 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 109702 tgcctatgcgtgtgtgtgtg 109683
>gb|AC161614.4| Pan troglodytes BAC clone CH251-575E11 from chromosome unknown, complete sequence Length = 172771 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 tatgcgtgtgtgtgtggcca 419 |||||||||||||||||||| Sbjct: 67874 tatgcgtgtgtgtgtggcca 67893
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gttccgctgcgccgacatga 270 |||||||||||||||||||| Sbjct: 807673 gttccgctgcgccgacatga 807692
>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF), panthotenate metabolism flavoprotein (dfp), deoxyuridine-triphosphatase (dut), putative sensor protein (bdfA), GalF-like (galF), hypothetical protein genes, complete cds; putative helicase 2 gene, partial cds; and unknown genes Length = 13289 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gttccgctgcgccgacatga 270 |||||||||||||||||||| Sbjct: 8366 gttccgctgcgccgacatga 8347
>dbj|AP000841.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-89J9, complete sequence Length = 103177 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 15070 tgcctatgcgtgtgtgtgtg 15051
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ccggctgctcggcgtgccgc 227 |||||||||||||||||||| Sbjct: 369417 ccggctgctcggcgtgccgc 369398
>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence Length = 176325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 134621 tgcctatgcgtgtgtgtgtg 134602
>dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-215C1, complete sequences Length = 150724 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 127465 tgcctatgcgtgtgtgtgtg 127484
>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete sequences Length = 172173 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 9236 tgcctatgcgtgtgtgtgtg 9255
>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete sequence Length = 174638 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tgcctatgcgtgtgtgtgtg 415 |||||||||||||||||||| Sbjct: 113003 tgcctatgcgtgtgtgtgtg 112984 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,263,820 Number of Sequences: 3902068 Number of extensions: 13263820 Number of successful extensions: 133641 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133393 Number of HSP's gapped (non-prelim): 242 length of query: 553 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 530 effective length of database: 17,143,297,704 effective search space: 9085947783120 effective search space used: 9085947783120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)