Clone Information

BLAST Search Result

Clone Name	basd2m20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro...	120	6e-28
2	CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl...	55	5e-08
3	CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl...	54	1e-07
4	CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast...	54	1e-07
5	CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe...	53	2e-07
6	CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe...	52	3e-07
7	CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl...	52	3e-07
8	CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ...	52	3e-07
9	CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla...	51	6e-07
10	CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop...	51	6e-07
11	CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast...	51	6e-07
12	CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type...	51	6e-07
13	CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl...	51	7e-07
14	CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...	51	7e-07
15	CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop...	51	7e-07
16	CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla...	50	1e-06
17	CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast...	50	1e-06
18	CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...	50	1e-06
19	CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla...	50	1e-06
20	CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...	50	1e-06
21	CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...	50	1e-06
22	CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...	50	1e-06
23	CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...	50	1e-06
24	CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...	50	1e-06
25	CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...	50	1e-06
26	CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...	50	1e-06
27	CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...	50	1e-06
28	CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl...	50	1e-06
29	CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast...	50	1e-06
30	CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla...	50	1e-06
31	CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast...	50	1e-06
32	CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla...	50	1e-06
33	CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast...	50	1e-06
34	CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast...	50	1e-06
35	CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ...	50	1e-06
36	CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl...	49	2e-06
37	CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type...	49	2e-06
38	CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe...	49	3e-06
39	CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop...	49	4e-06
40	CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl...	49	4e-06
41	CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...	48	5e-06
42	CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...	48	6e-06
43	CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla...	47	1e-05
44	CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type...	47	1e-05
45	CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ...	47	1e-05
46	CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl...	47	1e-05
47	CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla...	47	1e-05
48	CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl...	47	1e-05
49	CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla...	47	1e-05
50	CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl...	47	1e-05
51	CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla...	47	1e-05
52	CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast...	47	1e-05
53	CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo...	46	2e-05
54	CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ...	45	3e-05
55	CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty...	45	3e-05
56	CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chlo...	45	4e-05
57	CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, ch...	44	1e-04
58	CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla...	42	3e-04
59	CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop...	42	3e-04
60	CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, ch...	42	3e-04
61	CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chlo...	41	6e-04
62	CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ...	40	0.001
63	CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop...	40	0.002
64	CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo...	39	0.003
65	CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29	37	0.009
66	CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl...	37	0.015
67	CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type...	36	0.019
68	CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla...	36	0.019
69	LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre...	36	0.025
70	CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla...	33	0.21
71	NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1 (Na(+)/K...	30	1.0
72	NLPD_SALTY (P40827) Lipoprotein nlpD precursor	30	1.4
73	NLPD_SALDU (P39700) Lipoprotein nlpD precursor	30	1.4
74	UBIE_PORGI (Q7MVR7) Menaquinone biosynthesis methyltransferase u...	30	1.4
75	NLPD_SALTI (Q56131) Lipoprotein nlpD precursor	30	1.4
76	INLA_LISMF (Q723K6) Internalin A precursor	29	2.3
77	PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EI...	29	3.0
78	CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla...	29	3.0
79	INLA_LISMO (P25146) Internalin A precursor	28	4.0
80	LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre...	28	4.0
81	C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associate...	28	5.2
82	NLPD_SHIFL (P0ADA4) Lipoprotein nlpD precursor	28	5.2
83	NLPD_ECOLI (P0ADA3) Lipoprotein nlpD precursor	28	5.2
84	YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5	28	6.8
85	THTM_ECOLI (P31142) 3-mercaptopyruvate sulfurtransferase (EC 2.8...	27	8.8
86	THTM_ECO57 (P58388) 3-mercaptopyruvate sulfurtransferase (EC 2.8...	27	8.8
87	VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)	27	8.8
88	AGLU_TETPY (O00906) Lysosomal acid alpha-glucosidase precursor (...	27	8.8
89	S3TC2_MOUSE (Q80VA5) SH3 domain and tetratricopeptide repeats-co...	27	8.8
90	VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)	27	8.8
91	IL1FA_MOUSE (Q8R459) Interleukin-1 family member 10 (IL-1F10)	27	8.8

>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score =  120 bits (302), Expect = 6e-28
 Identities = 63/113 (55%), Positives = 77/113 (68%)
 Frame = +1

Query: 70  MAALAPTKMLGTRLDFAGSSRYATAAPTAGAQKIVSLFDRFNXXXXXXXXXXXVATSSAG 249
           MA+L  ++MLGT L+F   SR  ++AP A +         F+           V+ +S  
Sbjct: 1   MASLGVSEMLGTPLNFRAVSR--SSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETS-- 56

Query: 250 IDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
             DELAKWYGPDRRI+LP+GLLDRSE+PEYLNGEV GDYGYDPFGLGKKPE+F
Sbjct: 57  --DELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENF 107

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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 34/91 (37%), Positives = 40/91 (43%)
 Frame = +1

Query: 136 ATAAPTAGAQKIVSLFDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLL 315
           A+ A TA +  +V                  VA  SA        WYGPDR  YL     
Sbjct: 2   ASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPF-- 59

Query: 316 DRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
             ++ P YLNGE PGDYG+D  GL   PE F
Sbjct: 60  -SAQTPSYLNGEFPGDYGWDTAGLSADPEAF 89

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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 27/46 (58%), Positives = 29/46 (63%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR +YL  G L   E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 27/46 (58%), Positives = 29/46 (63%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR +YL  G L   E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 25/46 (54%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR +YL        E P YL GE PGDYG+D  GL   PE+F
Sbjct: 58  WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENF 100

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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 28/56 (50%), Positives = 32/56 (57%)
 Frame = +1

Query: 241 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           +A ID   + WYGPDR +YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 55  AASID---SPWYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 104

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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 28/56 (50%), Positives = 32/56 (57%)
 Frame = +1

Query: 241 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           +A ID   + WYGPDR +YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 55  AASID---SPWYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 104

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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 25/46 (54%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL       ++ P YLNGE PGDYG+D  GL   PE F
Sbjct: 50  WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAF 92

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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 24/46 (52%), Positives = 27/46 (58%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        ++P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 24/46 (52%), Positives = 27/46 (58%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        ++P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 28/58 (48%), Positives = 31/58 (53%)
 Frame = +1

Query: 235 TSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           T  A + D  + WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 38  TVKAPVSD--SPWYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETF 90

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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +1

Query: 268 KWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           ++YGPDR  +L  G    ++ PEYL GE PGDYG+D  GL   P+ F
Sbjct: 32  EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTF 76

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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 50  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE F
Sbjct: 50  WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 35/95 (36%), Positives = 41/95 (43%)
 Frame = +1

Query: 124 SSRYATAAPTAGAQKIVSLFDRFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLP 303
           +S  A ++P AG  K V L    +              S A      + WYGPDR  YL 
Sbjct: 3   ASTTALSSPFAG--KAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLG 60

Query: 304 NGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
                  E P YL GE PGDYG+D  GL   PE F
Sbjct: 61  PF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR +YL  G L   E P YL GE PGDYG+D  GL   PE F
Sbjct: 45  WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 87

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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 46  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 88

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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 50  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 53  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 95

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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 29  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 71

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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 48  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 90

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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/46 (52%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 48  WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 90

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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 47  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 89

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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/46 (52%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 47  WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 89

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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 52  WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 94

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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/46 (54%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 39  WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 81

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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR +YL  G L  S  P YL GE PGDYG+D  GL   PE F
Sbjct: 48  WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETF 90

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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 27/56 (48%), Positives = 31/56 (55%)
 Frame = +1

Query: 241 SAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           SAGI+     WYGPDR  +L       +  P YL GE PGDYG+D  GL   PE F
Sbjct: 34  SAGIE-----WYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETF 81

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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 25/46 (54%), Positives = 28/46 (60%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR +YL  G    S  P YL+GE PGDYG+D  GL   PE F
Sbjct: 49  WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETF 91

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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE P DYG+D  GL   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETF 93

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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D  GL   P  F
Sbjct: 50  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATF 92

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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 24/46 (52%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGP+R  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 51  WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 93

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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL        E P YL GE PGDYG+D   L   PE F
Sbjct: 51  WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETF 93

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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 21  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 63

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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%)
 Frame = +1

Query: 232 ATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           A  S+G++     +YGP+R  +L  G    +  P YL GE PGDYG+D  GL   PE F
Sbjct: 28  APKSSGVE-----FYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETF 79

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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/58 (46%), Positives = 30/58 (51%)
 Frame = +1

Query: 235 TSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           + SAG D     WYG DR  +L        E P YLNGE  GDYG+D  GL   PE F
Sbjct: 43  SKSAGSD---TIWYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETF 94

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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        + P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 50  WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 50  WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 92

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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 49  WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETF 91

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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +1

Query: 280 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           PDR ++ P      S  PE+L+G +PGD+G+DP GLG  PE
Sbjct: 63  PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPE 98

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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYGPDR  YL  G       P YL GE PGDYG+D   +   PE F
Sbjct: 50  WYGPDRPKYL--GPFSEG-TPSYLTGEFPGDYGWDTAAVSADPETF 92

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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 22/46 (47%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           WYG DR  +L        + P YL GE PGDYG+D  GL   PE F
Sbjct: 48  WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETF 90

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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/46 (50%), Positives = 25/46 (54%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           W+GPD   YL        E P YL GE PGDYG+D  GL   PE F
Sbjct: 12  WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 54

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>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +1

Query: 265 AKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           AK    DR ++ P      ++ PEYL+G + GDYG+DPFGLGK  E
Sbjct: 45  AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAE 85

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>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast|
           precursor (CAB-10A) (LHCP)
          Length = 256

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 331 PEYLNGEVPGDYGYDPFGLGKKP 399
           PE+L+G +PGDYG+DP GLGK P
Sbjct: 68  PEWLDGSLPGDYGFDPLGLGKDP 90

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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +1

Query: 280 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           PDR ++ P      S  P +L+G +PGD+G+DP GL   PE
Sbjct: 63  PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPE 98

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>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 331 PEYLNGEVPGDYGYDPFGLGKKP 399
           PE+L+G +PGD+G+DP GLGK P
Sbjct: 73  PEWLDGSLPGDFGFDPLGLGKDP 95

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>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast|
           precursor (CAB-10B) (LHCP)
          Length = 256

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 331 PEYLNGEVPGDYGYDPFGLGKKP 399
           PE+L+G +PGD+G+DP GLGK P
Sbjct: 68  PEWLDGSLPGDFGFDPLGLGKDP 90

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>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 283 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           DR ++ P  +      P++L+G + GDYG+DPFGLGK  E
Sbjct: 54  DRPLWYPGAIS-----PDWLDGSLVGDYGFDPFGLGKPAE 88

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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 325 EVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           E P YL GE PGDYG+D  GL   PE F
Sbjct: 5   EPPSYLTGEFPGDYGWDTAGLSADPETF 32

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>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 325 EVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           E P YL GE PGDYG+D  GL   PE F
Sbjct: 68  EWPSYLTGEFPGDYGWDTAGLSAYPETF 95

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>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 283 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           DR ++ P      +  PE+L+G + GD G+DPFGLGK  E
Sbjct: 55  DRLVWFPG-----ANPPEWLDGSMIGDRGFDPFGLGKPAE 89

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>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 292 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           ++LPN     +  PE+L+G +PGD G+DP GL K  E
Sbjct: 51  LWLPN-----TTRPEWLDGSLPGDRGFDPLGLSKPSE 82

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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 331 PEYLNGEVPGDYGYDPFGLGKKP 399
           P YL+G  PGD+G+D  GLG+ P
Sbjct: 56  PSYLDGSAPGDFGFDSLGLGEVP 78

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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 268 KWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           ++YGPD      +G   + + P    GE PGDYG+D  GL   PE F
Sbjct: 56  QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETF 98

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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +1

Query: 187 RFNXXXXXXXXXXXVATSSAGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDY 366
           R N             TSS  ++ +  +W        LP GL      P+YL G + GD 
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFKVEAKKGEW--------LP-GLAS----PDYLTGSLAGDN 75

Query: 367 GYDPFGLGKKPED 405
           G+DP GL + PE+
Sbjct: 76  GFDPLGLAEDPEN 88

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>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 292 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           ++ PN L      P +LNGE  GD G+DP GL   P+ F
Sbjct: 4   LWFPNTL-----APSWLNGEYYGDRGFDPAGLAADPDTF 37



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 283 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDF 408
           +R ++ PN +      P YL GE  GD G+DP GL   P  F
Sbjct: 370 ERELWFPNIV-----PPRYLTGEAYGDKGFDPAGLAADPVTF 406



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 292 IYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           ++ PN     +E P  L GE P D G+DP  L   P+
Sbjct: 189 LWFPN-----AEPPALLTGEYPADRGFDPLNLAADPD 220

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>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 337 YLNGEVPGDYGYDPFGL 387
           YL+G +PGD+G+DP GL
Sbjct: 65  YLDGRLPGDFGFDPLGL 81

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>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1181

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATILLVWARSQRTS 409
           +SP+ T   G    P+ +   R    TST +  ETTAT  ++  RS+RT+
Sbjct: 177 SSPTHTREEGRMHTPSPAGAPRTISPTSTEKDSETTATYRMLEPRSERTA 226

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>NLPD_SALTY (P40827) Lipoprotein nlpD precursor|
          Length = 377

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 349
           N P+GT +T   T PT S T     STST+
Sbjct: 223 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 252

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>NLPD_SALDU (P39700) Lipoprotein nlpD precursor|
          Length = 377

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 349
           N P+GT +T   T PT S T     STST+
Sbjct: 223 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 252

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>UBIE_PORGI (Q7MVR7) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 245

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -3

Query: 372 VAVVSGNLAVEVLRHLRPVKEAVGQVDPPVRAVPLGE 262
           VA  +G+LA+E+ RH+  VK+  G VD  +  + +GE
Sbjct: 65  VATGTGDLAIEICRHIPSVKQVTG-VDLSLEMMRIGE 100

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>NLPD_SALTI (Q56131) Lipoprotein nlpD precursor|
          Length = 373

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 349
           N P+GT +T   T PT S T     STST+
Sbjct: 219 NKPAGTVVTAPVTAPTVSTTEPNASSTSTS 248

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>INLA_LISMF (Q723K6) Internalin A precursor|
          Length = 800

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATI 376
           N+P  T   G +T P+A++ G    +TST     TT+T+
Sbjct: 716 NTPPTTNNGGNTTPPSANIPGSNTSNTSTGNSASTTSTM 754

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>PTW3C_BACSU (P39816) Putative PTS system glucosamine-specific EIICBA component|
           [Includes: Glucosamine permease IIC component (PTS
           system glucosamine-specific EIIC component);
           Glucosamine-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (PTS
          Length = 631

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 170 IFCAPAVGAAVAYLEEPAKSSRVPSILVGAS 78
           IFC PAV  A+ +   P K   +  +++ A+
Sbjct: 252 IFCLPAVALAIIHTARPEKKKMISGVMISAA 282

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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/44 (43%), Positives = 19/44 (43%)
 Frame = +1

Query: 271 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPE 402
           WYGPDR  YL        E P YL GE  G    DP    K  E
Sbjct: 48  WYGPDRVKYLGP---FSGEAPSYLTGEFHG-LSADPETFAKNRE 87

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>INLA_LISMO (P25146) Internalin A precursor|
          Length = 800

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTATI 376
           N+P  T   G +T P+A++ G    +TST     TT+T+
Sbjct: 716 NTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTM 754

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>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 322 SEVPEYLNGEVPGDYGYDPFGLGKKP 399
           ++ P +L GE P D G+DP  +   P
Sbjct: 166 AQPPAHLTGEYPADRGFDPLSVAADP 191

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>C8AP2_HUMAN (Q9UKL3) CASP8-associated protein 2 (FLICE-associated huge protein)|
          Length = 1982

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 336 LRHLRPVKEAVGQVDPPVRAV 274
           L HLRP+ EA+  ++ PVR V
Sbjct: 847 LNHLRPIPEAISPLNSPVRPV 867

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>NLPD_SHIFL (P0ADA4) Lipoprotein nlpD precursor|
          Length = 379

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 349
           N P+ T +T   T PTAS T     STST+
Sbjct: 225 NKPTATTVTAPVTVPTASTTEPTVSSTSTS 254

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>NLPD_ECOLI (P0ADA3) Lipoprotein nlpD precursor|
          Length = 379

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTA 349
           N P+ T +T   T PTAS T     STST+
Sbjct: 225 NKPTATTVTAPVTVPTASTTEPTVSSTSTS 254

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>YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5|
          Length = 1216

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 260 NSPSGTALTGGSTCPTASLTGRRCRSTSTARFPETTAT 373
           ++P  TA T  ST P+A+LT       ST++ PET+ T
Sbjct: 825 STPLETASTSQST-PSATLTSTTENIPSTSKIPETSTT 861

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>THTM_ECOLI (P31142) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)|
           (Rhodanese-like protein) (MST)
          Length = 280

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 283 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYD 375
           D R+  P G  DR+   EYLNG +PG   +D
Sbjct: 24  DARMASP-GQEDRNVAQEYLNGHIPGAVFFD 53

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>THTM_ECO57 (P58388) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)|
           (Rhodanese-like protein) (MST)
          Length = 280

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 283 DRRIYLPNGLLDRSEVPEYLNGEVPGDYGYD 375
           D R+  P G  DR+   EYLNG +PG   +D
Sbjct: 24  DARMASP-GQEDRNVAQEYLNGHIPGAVFFD 53

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>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 383

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 79  APPLPQAQGWEGEGACSRGACSAL 8
           APPLP AQG  G G  + G  +A+
Sbjct: 209 APPLPTAQGTSGGGTGAPGLAAAI 232

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>AGLU_TETPY (O00906) Lysosomal acid alpha-glucosidase precursor (EC 3.2.1.20)|
           (Acid maltase)
          Length = 923

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = +1

Query: 301 PNGL-LDRSEVPEYLNGEV--------PGDYGYDPFGLGKKPEDF 408
           P+G  +D +E   ++NGE+        PGD   +P  LG   EDF
Sbjct: 449 PSGFWIDMNEFSNFINGEISEDQNCIMPGDTTTNPNYLGNSVEDF 493

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>S3TC2_MOUSE (Q80VA5) SH3 domain and tetratricopeptide repeats-containing|
           protein 2
          Length = 1289

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 70  LPQAQGWEGEGACSRGACSALV 5
           LP+ + W G G   RG C AL+
Sbjct: 255 LPRKRDWTGSGQIGRGRCKALM 276

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>VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 379

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 79  APPLPQAQGWEGEGACSRGACSAL 8
           APPLP AQG  G GA + G  +A+
Sbjct: 206 APPLPAAQGPGGGGAGAPGLAAAI 229

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>IL1FA_MOUSE (Q8R459) Interleukin-1 family member 10 (IL-1F10)|
          Length = 152

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 274 YGPDRRIYLPNGLLDRSEVPEYL 342
           Y P++   LPN  LDRS+VP +L
Sbjct: 37  YSPEKVCILPNRGLDRSKVPIFL 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,847,589
Number of Sequences: 219361
Number of extensions: 715417
Number of successful extensions: 1929
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result