ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3b19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 165 bits (83), Expect = 2e-37 Identities = 218/263 (82%) Strand = Plus / Plus Query: 381 caaccttctggccaatttccatcgggctcttctaatgtgacatcgtctttggaccttcca 440 ||||||||||||| |||| |||| || | |||||| | |||||||||||||||| ||| Sbjct: 117691 caaccttctggcccattttcatctggtccgtctaatccggcatcgtctttggacctccca 117750 Query: 441 cctatgccagcaaatccaccacaatcagcacaatcaaaaggataccctatccatcagatg 500 ||||| |||||||||||| ||||||||||||| | ||||| || ||||||||||| ||| Sbjct: 117751 gctatgtcagcaaatccacaacaatcagcacaagcgaaaggttatcctatccatcaaatg 117810 Query: 501 cattccgcatcagcaccgcagtcatctcagtatccaaatgttaccatgcctcctcatgct 560 | | || ||||| || | ||| |||| ||| ||| || || |||| | |||||||||| | Sbjct: 117811 cctcccacatcaacaactcagacatcccagcatcaaagtgctaccctacctcctcatgtt 117870 Query: 561 cctccacagtattcaaatgttccatctcatatgccaacagtgaataatcaaccacagcaa 620 | |||||||||||||| ||||||| |||||||||| ||| ||| ||| ||||||||| Sbjct: 117871 tcatcacagtattcaaatattccatcacatatgccaatagttcatagtcagccacagcaa 117930 Query: 621 ccgttgcaaaatcctggaatgtt 643 || |||||||||||||| ||||| Sbjct: 117931 cctttgcaaaatcctggtatgtt 117953 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 43 ccatgacggcgaatcagccggcgggcgaggccctcgcgacccacatctccggcatgtccc 102 ||||| ||||||| |||||||||||||||||||||||| || ||||||||| |||||||| Sbjct: 116336 ccatggcggcgaaccagccggcgggcgaggccctcgcggccaacatctccgccatgtccc 116395 Query: 103 gcccggagatgcacgacctcatgtcccagatgaagg 138 ||||||||||| |||||||||||||||||||||||| Sbjct: 116396 gcccggagatgtacgacctcatgtcccagatgaagg 116431 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 140 catgatcgaccacgaccaggagagggtgcgccgaatgctcgtcgagaaccccgacgtcac 199 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 116565 catgatcgaccacgaccaggagagggtgcgccggatgctcgtcgacaacccggacgtcac 116624 Query: 200 ccgcgcgctcttccggg 216 |||||| |||||||||| Sbjct: 116625 ccgcgctctcttccggg 116641
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 165 bits (83), Expect = 2e-37 Identities = 218/263 (82%) Strand = Plus / Plus Query: 381 caaccttctggccaatttccatcgggctcttctaatgtgacatcgtctttggaccttcca 440 ||||||||||||| |||| |||| || | |||||| | |||||||||||||||| ||| Sbjct: 25254850 caaccttctggcccattttcatctggtccgtctaatccggcatcgtctttggacctccca 25254909 Query: 441 cctatgccagcaaatccaccacaatcagcacaatcaaaaggataccctatccatcagatg 500 ||||| |||||||||||| ||||||||||||| | ||||| || ||||||||||| ||| Sbjct: 25254910 gctatgtcagcaaatccacaacaatcagcacaagcgaaaggttatcctatccatcaaatg 25254969 Query: 501 cattccgcatcagcaccgcagtcatctcagtatccaaatgttaccatgcctcctcatgct 560 | | || ||||| || | ||| |||| ||| ||| || || |||| | |||||||||| | Sbjct: 25254970 cctcccacatcaacaactcagacatcccagcatcaaagtgctaccctacctcctcatgtt 25255029 Query: 561 cctccacagtattcaaatgttccatctcatatgccaacagtgaataatcaaccacagcaa 620 | |||||||||||||| ||||||| |||||||||| ||| ||| ||| ||||||||| Sbjct: 25255030 tcatcacagtattcaaatattccatcacatatgccaatagttcatagtcagccacagcaa 25255089 Query: 621 ccgttgcaaaatcctggaatgtt 643 || |||||||||||||| ||||| Sbjct: 25255090 cctttgcaaaatcctggtatgtt 25255112 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 43 ccatgacggcgaatcagccggcgggcgaggccctcgcgacccacatctccggcatgtccc 102 ||||| ||||||| |||||||||||||||||||||||| || ||||||||| |||||||| Sbjct: 25253495 ccatggcggcgaaccagccggcgggcgaggccctcgcggccaacatctccgccatgtccc 25253554 Query: 103 gcccggagatgcacgacctcatgtcccagatgaagg 138 ||||||||||| |||||||||||||||||||||||| Sbjct: 25253555 gcccggagatgtacgacctcatgtcccagatgaagg 25253590 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 140 catgatcgaccacgaccaggagagggtgcgccgaatgctcgtcgagaaccccgacgtcac 199 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 25253724 catgatcgaccacgaccaggagagggtgcgccggatgctcgtcgacaacccggacgtcac 25253783 Query: 200 ccgcgcgctcttccggg 216 |||||| |||||||||| Sbjct: 25253784 ccgcgctctcttccggg 25253800
>gb|AC102603.11| Mus musculus chromosome 14, clone RP23-385I17, complete sequence Length = 204565 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 377 tttgcaaccttctggccaatttccat 402 |||||||||||||||||| ||||||| Sbjct: 167419 tttgcaaccttctggccagtttccat 167394
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 182 cgagaaccccgacgtcacccgcgcgc 207 |||||||||||||| ||||||||||| Sbjct: 3212667 cgagaaccccgacgacacccgcgcgc 3212692
>gb|BT010229.1| Drosophila melanogaster RE64695 full insert cDNA Length = 1242 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 366 aatcaacagaatttgcaaccttctgg 391 ||||||||||||| |||||||||||| Sbjct: 554 aatcaacagaattggcaaccttctgg 579
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 366 aatcaacagaatttgcaaccttctgg 391 ||||||||||||| |||||||||||| Sbjct: 20173 aatcaacagaattggcaaccttctgg 20148
>gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165014 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 catgtcccagatgaaggccatg 143 |||||||||||||||||||||| Sbjct: 41162 catgtcccagatgaaggccatg 41183
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187555 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 366 aatcaacagaatttgcaaccttctgg 391 ||||||||||||| |||||||||||| Sbjct: 74778 aatcaacagaattggcaaccttctgg 74753
>ref|NM_139931.2| Drosophila melanogaster CG8005-RA (CG8005), mRNA Length = 1225 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 366 aatcaacagaatttgcaaccttctgg 391 ||||||||||||| |||||||||||| Sbjct: 554 aatcaacagaattggcaaccttctgg 579
>ref|NM_132224.1| Drosophila melanogaster G5 CG10763-RA (Gbeta5), mRNA Length = 1561 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 catgtcccagatgaaggccatg 143 |||||||||||||||||||||| Sbjct: 828 catgtcccagatgaaggccatg 807
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 catgatcgaccacgaccaggag 161 |||||||||||||||||||||| Sbjct: 1697918 catgatcgaccacgaccaggag 1697897
>gb|AC084374.21| Homo sapiens 12q BAC RP11-134O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122602 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatca 610 |||||||||||||||||||||| Sbjct: 120086 atatgccaacagtgaataatca 120107
>gb|BT004841.1| Drosophila melanogaster RH17413 full insert cDNA Length = 1564 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 catgtcccagatgaaggccatg 143 |||||||||||||||||||||| Sbjct: 829 catgtcccagatgaaggccatg 808
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 366 aatcaacagaatttgcaaccttctgg 391 ||||||||||||| |||||||||||| Sbjct: 147289 aatcaacagaattggcaaccttctgg 147314
>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete sequence Length = 299153 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 catgtcccagatgaaggccatg 143 |||||||||||||||||||||| Sbjct: 35267 catgtcccagatgaaggccatg 35288
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 175 tgctcgtcgagaaccccgacgt 196 |||||||||||||||||||||| Sbjct: 1662314 tgctcgtcgagaaccccgacgt 1662335
>gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosome 14, complete sequence Length = 216861 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 377 tttgcaaccttctggccaatttccat 402 |||||||||||||||||| ||||||| Sbjct: 208563 tttgcaaccttctggccagtttccat 208588
>gb|AC167421.2| Mus musculus BAC clone RP23-143K19 from chromosome 3, complete sequence Length = 194311 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 taaagctacaacacaagatca 334 ||||||||||||||||||||| Sbjct: 10929 taaagctacaacacaagatca 10909
>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence Length = 172081 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 taaagctacaacacaagatca 334 ||||||||||||||||||||| Sbjct: 54114 taaagctacaacacaagatca 54134
>gb|AC185523.2| Pan troglodytes chromosome X clone PTB-124O20 map human ortholog p11.3, complete sequence Length = 209530 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 175888 atatgccaacagtgaataatc 175908
>ref|XM_988518.1| PREDICTED: Mus musculus hypothetical protein LOC671688 (LOC671688), mRNA Length = 896 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 286 ccggccgctcccctcctcccgcgcg 310
>ref|XM_988194.1| PREDICTED: Mus musculus hypothetical protein LOC676214 (LOC676214), mRNA Length = 1073 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 463 ccggccgctcccctcctcccgcgcg 487
>ref|XM_898427.2| PREDICTED: Mus musculus hypothetical LOC624685 (LOC624685), mRNA Length = 4789 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 3313 ccggccgctcccctcctcccgcgcg 3337
>emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 on chromosome Xq21.1 Contains the P2RY10 gene for purinergic receptor P2Y G-protein coupled 10, complete sequence Length = 128011 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 113766 atatgccaacagtgaataatc 113746
>emb|AL731768.3| Human DNA sequence from clone RP13-324D24 on chromosome X, complete sequence Length = 68444 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 42089 atatgccaacagtgaataatc 42069
>emb|AL591409.3| Human DNA sequence from clone RP11-161K18 on chromosome X, complete sequence Length = 133516 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 45406 atatgccaacagtgaataatc 45426
>emb|AL590364.5| Human DNA sequence from clone RP11-342D14 on chromosome X Contains the 3' end of a novel gene, complete sequence Length = 65644 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 25972 atatgccaacagtgaataatc 25992
>emb|AL445986.14| Human DNA sequence from clone RP11-310F24 on chromosome 9 Contains a CpG island, complete sequence Length = 120873 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 114908 atatgccaacagtgaataatc 114928
>emb|AL355587.14| Human DNA sequence from clone RP11-561H23 on chromosome 10 Contains the 3' end of a novel gene (KIAA1136) (FLJ37801) and a CpG island, complete sequence Length = 130039 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 98409 atatgccaacagtgaataatc 98389
>emb|AL354737.12| Human DNA sequence from clone RP11-569H20 on chromosome X, complete sequence Length = 172991 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 30253 atatgccaacagtgaataatc 30273
>gb|AC124153.2| Homo sapiens chromosome 3 clone RP11-21D1, complete sequence Length = 165693 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 112390 atatgccaacagtgaataatc 112370
>emb|AL022718.1|HS1052M9 Human DNA sequence from clone RP5-1052M9 on chromosome Xq25 Contains a testis expressed sequence 13 (TEX13) pseudogene, the SH2D1A gene for Duncan's disease (lymphoproliferative syndrome) SH2 domain protein 1A and the 3' end of the ODZ1 gene for odz odd Oz/ten-m homolog 1 (Drosophila), complete sequence Length = 134245 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 10508 atatgccaacagtgaataatc 10528
>gb|AC087238.25| Homo sapiens 12 BAC RP11-174M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175998 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 99458 atatgccaacagtgaataatc 99438
>gb|AC114978.2| Homo sapiens chromosome 5 clone RP11-512I16, complete sequence Length = 40890 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 39216 atatgccaacagtgaataatc 39196
>gb|AC087315.21| Homo sapiens 12p BAC RP11-626A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154443 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 49009 atatgccaacagtgaataatc 49029
>gb|AC089985.14| Homo sapiens 12q BAC RP11-798P24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146779 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 97645 atatgccaacagtgaataatc 97665
>dbj|AK154950.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630112K10 product:hypothetical protein, full insert sequence Length = 3719 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 450 ccggccgctcccctcctcccgcgcg 426
>gb|AC008883.6| Homo sapiens chromosome 5 clone CTD-2215E18, complete sequence Length = 127144 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 99222 atatgccaacagtgaataatc 99242
>gb|AC016555.6| Homo sapiens chromosome 5 clone CTC-358I24, complete sequence Length = 154848 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 4500 atatgccaacagtgaataatc 4480
>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence Length = 179513 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 39384 atatgccaacagtgaataatc 39364
>dbj|AK039704.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330091H04 product:unclassifiable, full insert sequence Length = 1933 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 457 ccggccgctcccctcctcccgcgcg 481
>gb|AC008766.4|AC008766 Homo sapiens chromosome 5 clone CTD-2004A9, complete sequence Length = 147530 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 94795 atatgccaacagtgaataatc 94775
>gb|AC010105.12| Homo sapiens BAC clone RP11-563E24 from 2, complete sequence Length = 193320 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 112031 atatgccaacagtgaataatc 112051
>emb|AL049829.4|CNS0000B Human chromosome 14 DNA sequence BAC R-124D2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196292 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 5993 atatgccaacagtgaataatc 6013
>dbj|AP002795.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-715G18, complete sequence Length = 165240 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 136024 atatgccaacagtgaataatc 136004
>emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-368P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155692 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 104031 atatgccaacagtgaataatc 104051
>emb|AL772228.5| Mouse DNA sequence from clone RP23-236D1 on chromosome 4, complete sequence Length = 167555 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 16 ccggccgctcccctgctcccgcgcg 40 |||||||||||||| |||||||||| Sbjct: 75213 ccggccgctcccctcctcccgcgcg 75189
>emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-244E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157827 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataatc 609 ||||||||||||||||||||| Sbjct: 21153 atatgccaacagtgaataatc 21133
>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster, partial sequence Length = 24637 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgtcgagaaccccgacgtca 198 |||||||||||||||||||| Sbjct: 17819 cgtcgagaaccccgacgtca 17800
>emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 in linkage group 6, complete sequence Length = 223513 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cacaatcagcacaatcaaaa 479 |||||||||||||||||||| Sbjct: 134926 cacaatcagcacaatcaaaa 134945
>emb|AL596268.5| Human DNA sequence from clone RP11-504E21 on chromosome X Contains a MAGE family pseudogene, complete sequence Length = 113335 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 84748 atatgccaacagtgaataat 84729
>emb|AL359545.12| Human DNA sequence from clone RP13-42E14 on chromosome Xq13.1-13.3 Contains the 3' end of the ABCB7 gene for ATP-binding cassette sub-family B (MDR/TAP) member 7, complete sequence Length = 127243 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 tatgccaacagtgaataatc 609 |||||||||||||||||||| Sbjct: 64878 tatgccaacagtgaataatc 64859
>emb|AL035700.13|HS75K24 Human DNA sequence from clone RP1-75K24 on chromosome 6q13-15, complete sequence Length = 80279 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 agtattcaaatgttccatct 587 |||||||||||||||||||| Sbjct: 61642 agtattcaaatgttccatct 61623
>emb|AL031885.3|HS510B21 Human DNA sequence from clone RP3-510B21 on chromosome 6p11.2-12.3 Contains a pseudogene similar to CLNS1B (chloride channel, nucleotide-sensitive, 1B), complete sequence Length = 108994 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 104404 atatgccaacagtgaataat 104423
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 17 cggccgctcccctgctcccgcgcgcgcc 44 |||||| |||||||||||||| |||||| Sbjct: 102047 cggccgttcccctgctcccgcccgcgcc 102020
>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5, complete sequence Length = 122930 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 gtcagcagttgctcagataactcc 301 ||||||||||| |||||||||||| Sbjct: 93983 gtcagcagttgttcagataactcc 93960
>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51070 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 20304 atatgccaacagtgaataat 20285
>gb|AC117569.3| Homo sapiens chromosome 18, clone RP11-784B15, complete sequence Length = 176898 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 117838 atatgccaacagtgaataat 117857
>gb|AC080006.11| Homo sapiens 3 BAC RP11-789N15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110483 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 tatgccaacagtgaataatc 609 |||||||||||||||||||| Sbjct: 24838 tatgccaacagtgaataatc 24857
>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence Length = 159942 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 18731 atatgccaacagtgaataat 18750
>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence Length = 194297 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 38769 atatgccaacagtgaataat 38788
>gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, complete sequence Length = 174147 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 100821 atatgccaacagtgaataat 100840
>gb|AC016178.9| Homo sapiens chromosome 8, clone RP11-259L23, complete sequence Length = 171035 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 tcatatgccaacagtgaata 606 |||||||||||||||||||| Sbjct: 30239 tcatatgccaacagtgaata 30258
>gb|AC074349.6| Homo sapiens BAC clone RP11-703G6 from 4, complete sequence Length = 176467 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 74116 atatgccaacagtgaataat 74135
>gb|AC079232.7| Homo sapiens BAC clone RP11-360H22 from 4, complete sequence Length = 169281 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 161313 atatgccaacagtgaataat 161332
>gb|AC018709.9| Homo sapiens BAC clone RP11-215A19 from 4, complete sequence Length = 161013 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 atatgccaacagtgaataat 608 |||||||||||||||||||| Sbjct: 97354 atatgccaacagtgaataat 97373
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gtcatctcagtatccaaatg 540 |||||||||||||||||||| Sbjct: 14631198 gtcatctcagtatccaaatg 14631179
>gb|AC003029.5| Homo sapiens 12 PAC RP3-462E2 (Roswell Park Cancer institute Human PAC Library) complete sequence Length = 137830 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 tgcctcagcctcacttgcctacca 366 |||||| ||||||||||||||||| Sbjct: 69712 tgcctcggcctcacttgcctacca 69689
>gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complete sequence Length = 167519 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 tatgccaacagtgaataatc 609 |||||||||||||||||||| Sbjct: 105697 tatgccaacagtgaataatc 105678
>gb|AC140060.3| Homo sapiens 12 BAC RP11-199A1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51708 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ttgctcagataactccttct 305 |||||||||||||||||||| Sbjct: 35811 ttgctcagataactccttct 35792
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cgcgcgcgccatgacggcga 54 |||||||||||||||||||| Sbjct: 3417007 cgcgcgcgccatgacggcga 3416988
>emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in linkage group 5, complete sequence Length = 191256 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 gtcagcagttgctcagataactcc 301 ||||||||||| |||||||||||| Sbjct: 34584 gtcagcagttgttcagataactcc 34607
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gtcatctcagtatccaaatg 540 |||||||||||||||||||| Sbjct: 52865 gtcatctcagtatccaaatg 52846
>gb|AE005127.1| Halobacterium sp. NRC-1 section 158 of 170 of the complete genome Length = 10420 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 89 ctccggcatgtcccgcccggagatgcacgacc 120 ||||||||| | |||||||||||||| ||||| Sbjct: 7352 ctccggcatcttccgcccggagatgctcgacc 7383
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgtcgagaaccccgacgtca 198 |||||||||||||||||||| Sbjct: 27173 cgtcgagaaccccgacgtca 27154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,425,317 Number of Sequences: 3902068 Number of extensions: 5425317 Number of successful extensions: 121119 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120640 Number of HSP's gapped (non-prelim): 479 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
