ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd3b16 |
|---|---|
| Clone Library Name | barley_pub |
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 32.0 bits (71), Expect = 0.70 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = -2 Query: 199 PPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAPRL*GPRTS 62 PP A+ + R Q S H P+ S RP P GRP P L RT+ Sbjct: 72 PPAAAESPSMHRKQELDSSHPPKQSGRP-PDPGRPAQPGLSKSRTT 116
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 199 PPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 PP PA PS S + PS S P + + PSP P+ P Sbjct: 147 PPSPAPPSPSPPVPPSPSPPVPPSPAPPSPTPPSPSPP 184 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/39 (43%), Positives = 18/39 (46%) Frame = -2 Query: 202 SPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 SPP PA PS S PS S P PSP P+ P Sbjct: 120 SPPSPAPPSPSPPAPPSPSPPSPAPPLPPSPAPPSPSPP 158 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -2 Query: 202 SPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 +PP PA PS PS S P + S PSP P +P Sbjct: 112 APPSPAPPSPPSPAPPSPSPPAPPSPSPPSPAPPLPPSP 150 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 199 PPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 PP PA PS + + PS + P + + PSP P +P Sbjct: 199 PPSPAPPSPAPPVPPSPAPPSPPSPAPPSPPSPAPPSP 236
>CPXM2_HUMAN (Q8N436) Carboxypeptidase-like protein X2 precursor| Length = 756 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -2 Query: 202 SPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 SPPLPA P W +P R RA+ + +AP Sbjct: 58 SPPLPAGPGEEWERRPQEPRPPKRATKPKKAPKREKSAP 96
>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) Length = 1055 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = -2 Query: 211 WARSPPLPAQPSASWRLQPSRSRHQPRASSRPSP--WEGRPT 92 W+ PP P P +WR QP + P P W G PT Sbjct: 960 WSHGPPPPGMPPPAWR--------QPALLAPPGPPNWLGPPT 993
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P+R RH+ R+SS S Sbjct: 239 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPARRRHRSRSSSNSS 282
>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 346 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -2 Query: 220 RPLWARSPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAPRL*GPRT 65 RP ++P ++PS P+ PR PWE RP+ GP T Sbjct: 70 RPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPWEARPSPGLPVGPAT 121
>IF2_GLOVI (Q7NH85) Translation initiation factor IF-2| Length = 925 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -2 Query: 220 RPLWARSPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 +P+ +PP PA+P+ + P + QP RP P P+ P Sbjct: 216 QPVRPPAPPAPAKPTPAPAPAPRPTAEQPSEPRRPQPPAQPPSRP 260
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P R RH+ R+SS S Sbjct: 261 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P R RH+ R+SS S Sbjct: 261 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P R RH+ R+SS S Sbjct: 261 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P R RH+ R+SS S Sbjct: 261 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQ---------PSRSRHQPRASSRPS 113 P+W RSPP + S S R + P R RH+ R+SS S Sbjct: 261 PMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -2 Query: 217 PLWARSPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAP 86 P +A PPLP P+A + P QP + P P P P Sbjct: 487 PDFAAPPPLPPPPAADYPTLPPPPLSQPTRGAPPPPPPPPPGPP 530
>PGCB_HUMAN (Q96GW7) Brevican core protein precursor (Brain-enriched| hyaluronan-binding protein) (BEHAB protein) Length = 911 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/54 (35%), Positives = 22/54 (40%) Frame = -2 Query: 208 ARSPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPTAPRL*GPRTSCLTCP 47 A P PA S P+R+ QP AS P PR+ GP T L P Sbjct: 493 ASLPTEPAAQEESLSQAPARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTP 546
>DMRT1_MOUSE (Q9QZ59) Doublesex- and mab-3-related transcription factor 1| Length = 374 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -2 Query: 202 SPPLPAQPSASWRLQPSRSRHQPRASSRPSPWEGRPT 92 +P +PAQ W+++ S SRH + R + G P+ Sbjct: 260 APYVPAQTGNQWQMKTSESRHPVSSQYRMHSYYGPPS 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.301 0.119 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,817,720 Number of Sequences: 219361 Number of extensions: 425199 Number of successful extensions: 1213 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1208 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits)
