Clone Name | basd2m11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 101 bits (51), Expect = 5e-19 Identities = 92/107 (85%) Strand = Plus / Plus Query: 1 gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60 |||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||| Sbjct: 496 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 555 Query: 61 ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107 || || || || | ||| |||||||| || ||||||||||| ||||| Sbjct: 556 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 602
>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full insert sequence Length = 1002 Score = 101 bits (51), Expect = 5e-19 Identities = 92/107 (85%) Strand = Plus / Plus Query: 1 gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60 |||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||| Sbjct: 612 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 671 Query: 61 ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107 || || || || | ||| |||||||| || ||||||||||| ||||| Sbjct: 672 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 718
>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full insert sequence Length = 1083 Score = 101 bits (51), Expect = 5e-19 Identities = 92/107 (85%) Strand = Plus / Plus Query: 1 gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60 |||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||| Sbjct: 620 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 679 Query: 61 ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107 || || || || | ||| |||||||| || ||||||||||| ||||| Sbjct: 680 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 726
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 2e-09 Identities = 67/79 (84%) Strand = Plus / Plus Query: 29 agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88 ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| | Sbjct: 2540350 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540409 Query: 89 tnaaacagaagcatgagaa 107 | ||||||||||| ||||| Sbjct: 2540410 tgaaacagaagcacgagaa 2540428
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 69.9 bits (35), Expect = 2e-09 Identities = 67/79 (84%) Strand = Plus / Minus Query: 29 agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88 ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| | Sbjct: 129744 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 129685 Query: 89 tnaaacagaagcatgagaa 107 | ||||||||||| ||||| Sbjct: 129684 tgaaacagaagcacgagaa 129666
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 2e-09 Identities = 67/79 (84%) Strand = Plus / Plus Query: 29 agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88 ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| | Sbjct: 2540460 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540519 Query: 89 tnaaacagaagcatgagaa 107 | ||||||||||| ||||| Sbjct: 2540520 tgaaacagaagcacgagaa 2540538
>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA, complete cds Length = 990 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgtgctaaagat 32 ||||||||||||||||||| || ||||| Sbjct: 604 aatgttttgaagagcttgttcttaagat 631
>emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA gene for haemagglutinin, genomic RNA Length = 1080 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tcttgaggttccaagtctgt 52 |||||||||||||||||||| Sbjct: 468 tcttgaggttccaagtctgt 449
>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 670 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgtgctaaagat 32 ||||||||||||||||||| || ||||| Sbjct: 497 aatgttttgaagagcttgttcttaagat 524
>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 864 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgtgctaaagat 32 ||||||||||||||||||| || ||||| Sbjct: 568 aatgttttgaagagcttgttcttaagat 595
>gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds Length = 105 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 agaaatgttttgaagagctt 21 |||||||||||||||||||| Sbjct: 55 agaaatgttttgaagagctt 74
>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence Length = 884 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgtgctaaagat 32 ||||||||||||||||||| || ||||| Sbjct: 607 aatgttttgaagagcttgttcttaagat 634
>gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.261_A_13, complete sequence Length = 145618 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 agagtgggggatgctgccag 126 |||||||||||||||||||| Sbjct: 140058 agagtgggggatgctgccag 140077
>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds Length = 700 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgtgctaaagat 32 ||||||||||||||||||| || ||||| Sbjct: 516 aatgttttgaagagcttgttcttaagat 543
>gb|AY813644.1| Schistosoma japonicum SJCHGC04562 protein mRNA, complete cds Length = 504 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 gaaatgttttgaagagctt 21 ||||||||||||||||||| Sbjct: 122 gaaatgttttgaagagctt 140
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gagcttgtgctaaagattc 34 ||||||||||||||||||| Sbjct: 486823 gagcttgtgctaaagattc 486841
>emb|CR352207.9| Zebrafish DNA sequence from clone CH211-110B5 in linkage group 7, complete sequence Length = 180005 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 aaacagaagcatgagaaga 109 ||||||||||||||||||| Sbjct: 66958 aaacagaagcatgagaaga 66976
>emb|AL445242.3| Human DNA sequence from clone RP11-321E11 on chromosome 13, complete sequence Length = 160177 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gaagagcttgtgctaaaga 31 ||||||||||||||||||| Sbjct: 10168 gaagagcttgtgctaaaga 10186
>ref|XM_784889.1| PREDICTED: Strongylocentrotus purpuratus similar to Gamma-tubulin complex component 3 (GCP-3) (Spindle pole body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p) (LOC585048), partial mRNA Length = 951 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 agtctgtcggaggaaggct 64 ||||||||||||||||||| Sbjct: 83 agtctgtcggaggaaggct 101
>ref|XM_775728.1| PREDICTED: Strongylocentrotus purpuratus similar to Gamma-tubulin complex component 3 (GCP-3) (Spindle pole body protein Spc98 homolog) (hSpc98) (hGCP3) (h104p) (LOC575318), partial mRNA Length = 2064 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 agtctgtcggaggaaggct 64 ||||||||||||||||||| Sbjct: 458 agtctgtcggaggaaggct 476
>emb|AL161506.2|ATCHRIV18 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18 Length = 197064 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 aaacagaagcatgagaaga 109 ||||||||||||||||||| Sbjct: 183048 aaacagaagcatgagaaga 183066
>emb|BX571738.12| Zebrafish DNA sequence from clone CH211-64K10 in linkage group 16, complete sequence Length = 141217 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agagcttgtgctaaagatt 33 ||||||||||||||||||| Sbjct: 31617 agagcttgtgctaaagatt 31635
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 cttgtgctaaagattcttgaggt 41 ||||| ||||||||||||||||| Sbjct: 100850 cttgttctaaagattcttgaggt 100828
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aagattcttgaggttccaa 46 ||||||||||||||||||| Sbjct: 5879976 aagattcttgaggttccaa 5879958
>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence Length = 146101 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 agaagcatgagaagagtgg 113 ||||||||||||||||||| Sbjct: 100723 agaagcatgagaagagtgg 100741
>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence Length = 208592 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 agtgggggatgctgccagt 127 ||||||||||||||||||| Sbjct: 183253 agtgggggatgctgccagt 183235
>gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence Length = 172660 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 agaagcatgagaagagtgg 113 ||||||||||||||||||| Sbjct: 81039 agaagcatgagaagagtgg 81021
>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome I, complete sequence Length = 122543 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgt 23 ||||||||||||||||||| Sbjct: 8312 aatgttttgaagagcttgt 8330
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aagattcttgaggttccaa 46 ||||||||||||||||||| Sbjct: 67086 aagattcttgaggttccaa 67068
>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete sequence Length = 131692 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 aatgttttgaagagcttgt 23 ||||||||||||||||||| Sbjct: 124548 aatgttttgaagagcttgt 124566
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aagattcttgaggttccaa 46 ||||||||||||||||||| Sbjct: 134121 aagattcttgaggttccaa 134103
>gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2 Length = 123080 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 aaacagaagcatgagaaga 109 ||||||||||||||||||| Sbjct: 47966 aaacagaagcatgagaaga 47984
>gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome 13, complete sequence Length = 159689 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 gcatgagaagagtggggga 117 ||||||||||||||||||| Sbjct: 52120 gcatgagaagagtggggga 52138
>gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome 13, complete sequence Length = 219890 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 gcatgagaagagtggggga 117 ||||||||||||||||||| Sbjct: 26936 gcatgagaagagtggggga 26918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,016,388 Number of Sequences: 3902068 Number of extensions: 1016388 Number of successful extensions: 61046 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60921 Number of HSP's gapped (non-prelim): 125 length of query: 127 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 106 effective length of database: 17,151,101,840 effective search space: 1818016795040 effective search space used: 1818016795040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)