ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2m11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predic... 101 5e-19
2dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 5e-19
3dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 5e-19
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 2e-09
5gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 70 2e-09
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-09
7ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G4... 40 1.5
8emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA g... 40 1.5
9gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein... 40 1.5
10gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein... 40 1.5
11gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds 40 1.5
12gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete se... 40 1.5
13gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.26... 40 1.5
14gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA... 40 1.5
15gb|AY813644.1| Schistosoma japonicum SJCHGC04562 protein mRNA, c... 38 5.9
16gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 5.9
17emb|CR352207.9| Zebrafish DNA sequence from clone CH211-110B5 in... 38 5.9
18emb|AL445242.3| Human DNA sequence from clone RP11-321E11 on chr... 38 5.9
19ref|XM_784889.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 5.9
20ref|XM_775728.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 5.9
21emb|AL161506.2|ATCHRIV18 Arabidopsis thaliana DNA chromosome 4, ... 38 5.9
22emb|BX571738.12| Zebrafish DNA sequence from clone CH211-64K10 i... 38 5.9
23gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, com... 38 5.9
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
25gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, ... 38 5.9
26gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ... 38 5.9
27gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence 38 5.9
28gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana... 38 5.9
29dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
30gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28... 38 5.9
31dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
32gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2 38 5.9
33gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome... 38 5.9
34gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome... 38 5.9 
>ref|XM_470212.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score =  101 bits (51), Expect = 5e-19
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60
           |||||||| ||||||||||||| | |||||||||||||||| |||||||| | |||||||
Sbjct: 496 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 555

                                                          
Query: 61  ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107
           || || || || | ||| |||||||| || ||||||||||| |||||
Sbjct: 556 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 602
to top
>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full
           insert sequence
          Length = 1002

 Score =  101 bits (51), Expect = 5e-19
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60
           |||||||| ||||||||||||| | |||||||||||||||| |||||||| | |||||||
Sbjct: 612 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 671

                                                          
Query: 61  ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107
           || || || || | ||| |||||||| || ||||||||||| |||||
Sbjct: 672 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 718
to top
>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full
           insert sequence
          Length = 1083

 Score =  101 bits (51), Expect = 5e-19
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaatgttttgaagagcttgtgctaaagattcttgaggttccaagtctgtcggaggaa 60
           |||||||| ||||||||||||| | |||||||||||||||| |||||||| | |||||||
Sbjct: 620 gagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaa 679

                                                          
Query: 61  ggctcgtcggtcgncaanaggaactcnctnaaacagaagcatgagaa 107
           || || || || | ||| |||||||| || ||||||||||| |||||
Sbjct: 680 ggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaa 726
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                           
Query: 29      agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88
               ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| |
Sbjct: 2540350 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540409

                                  
Query: 89      tnaaacagaagcatgagaa 107
               | ||||||||||| |||||
Sbjct: 2540410 tgaaacagaagcacgagaa 2540428
to top
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                          
Query: 29     agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88
              ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| |
Sbjct: 129744 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 129685

                                 
Query: 89     tnaaacagaagcatgagaa 107
              | ||||||||||| |||||
Sbjct: 129684 tgaaacagaagcacgagaa 129666
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                           
Query: 29      agattcttgaggttccaagtctgtcggaggaaggctcgtcggtcgncaanaggaactcnc 88
               ||||||||||||| |||||||| | ||||||||| || || || | ||| |||||||| |
Sbjct: 2540460 agattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctc 2540519

                                  
Query: 89      tnaaacagaagcatgagaa 107
               | ||||||||||| |||||
Sbjct: 2540520 tgaaacagaagcacgagaa 2540538
to top
>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA,
           complete cds
          Length = 990

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 5   aatgttttgaagagcttgtgctaaagat 32
           ||||||||||||||||||| || |||||
Sbjct: 604 aatgttttgaagagcttgttcttaagat 631
to top
>emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA gene for
           haemagglutinin, genomic RNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  tcttgaggttccaagtctgt 52
           ||||||||||||||||||||
Sbjct: 468 tcttgaggttccaagtctgt 449
to top
>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 670

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 5   aatgttttgaagagcttgtgctaaagat 32
           ||||||||||||||||||| || |||||
Sbjct: 497 aatgttttgaagagcttgttcttaagat 524
to top
>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 864

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 5   aatgttttgaagagcttgtgctaaagat 32
           ||||||||||||||||||| || |||||
Sbjct: 568 aatgttttgaagagcttgttcttaagat 595
to top
>gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds
          Length = 105

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agaaatgttttgaagagctt 21
          ||||||||||||||||||||
Sbjct: 55 agaaatgttttgaagagctt 74
to top
>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence
          Length = 884

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 5   aatgttttgaagagcttgtgctaaagat 32
           ||||||||||||||||||| || |||||
Sbjct: 607 aatgttttgaagagcttgttcttaagat 634
to top
>gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.261_A_13, complete sequence
          Length = 145618

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agagtgggggatgctgccag 126
              ||||||||||||||||||||
Sbjct: 140058 agagtgggggatgctgccag 140077
to top
>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds
          Length = 700

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 5   aatgttttgaagagcttgtgctaaagat 32
           ||||||||||||||||||| || |||||
Sbjct: 516 aatgttttgaagagcttgttcttaagat 543
to top
>gb|AY813644.1| Schistosoma japonicum SJCHGC04562 protein mRNA, complete cds
          Length = 504

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 3   gaaatgttttgaagagctt 21
           |||||||||||||||||||
Sbjct: 122 gaaatgttttgaagagctt 140
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     gagcttgtgctaaagattc 34
              |||||||||||||||||||
Sbjct: 486823 gagcttgtgctaaagattc 486841
to top
>emb|CR352207.9| Zebrafish DNA sequence from clone CH211-110B5 in linkage group 7,
             complete sequence
          Length = 180005

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    aaacagaagcatgagaaga 109
             |||||||||||||||||||
Sbjct: 66958 aaacagaagcatgagaaga 66976
to top
>emb|AL445242.3| Human DNA sequence from clone RP11-321E11 on chromosome 13, complete
             sequence
          Length = 160177

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gaagagcttgtgctaaaga 31
             |||||||||||||||||||
Sbjct: 10168 gaagagcttgtgctaaaga 10186
to top
>ref|XM_784889.1| PREDICTED: Strongylocentrotus purpuratus similar to Gamma-tubulin
           complex component 3 (GCP-3) (Spindle pole body protein
           Spc98 homolog) (hSpc98) (hGCP3) (h104p) (LOC585048),
           partial mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 46  agtctgtcggaggaaggct 64
           |||||||||||||||||||
Sbjct: 83  agtctgtcggaggaaggct 101
to top
>ref|XM_775728.1| PREDICTED: Strongylocentrotus purpuratus similar to Gamma-tubulin
           complex component 3 (GCP-3) (Spindle pole body protein
           Spc98 homolog) (hSpc98) (hGCP3) (h104p) (LOC575318),
           partial mRNA
          Length = 2064

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 46  agtctgtcggaggaaggct 64
           |||||||||||||||||||
Sbjct: 458 agtctgtcggaggaaggct 476
to top
>emb|AL161506.2|ATCHRIV18 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18
          Length = 197064

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     aaacagaagcatgagaaga 109
              |||||||||||||||||||
Sbjct: 183048 aaacagaagcatgagaaga 183066
to top
>emb|BX571738.12| Zebrafish DNA sequence from clone CH211-64K10 in linkage group 16,
             complete sequence
          Length = 141217

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    agagcttgtgctaaagatt 33
             |||||||||||||||||||
Sbjct: 31617 agagcttgtgctaaagatt 31635
to top
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence
          Length = 169944

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 19     cttgtgctaaagattcttgaggt 41
              ||||| |||||||||||||||||
Sbjct: 100850 cttgttctaaagattcttgaggt 100828
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 28      aagattcttgaggttccaa 46
               |||||||||||||||||||
Sbjct: 5879976 aagattcttgaggttccaa 5879958
to top
>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence
          Length = 146101

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 95     agaagcatgagaagagtgg 113
              |||||||||||||||||||
Sbjct: 100723 agaagcatgagaagagtgg 100741
to top
>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence
          Length = 208592

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    agtgggggatgctgccagt 127
              |||||||||||||||||||
Sbjct: 183253 agtgggggatgctgccagt 183235
to top
>gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence
          Length = 172660

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    agaagcatgagaagagtgg 113
             |||||||||||||||||||
Sbjct: 81039 agaagcatgagaagagtgg 81021
to top
>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome
            I, complete sequence
          Length = 122543

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 5    aatgttttgaagagcttgt 23
            |||||||||||||||||||
Sbjct: 8312 aatgttttgaagagcttgt 8330
to top
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0073I05
          Length = 182291

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aagattcttgaggttccaa 46
             |||||||||||||||||||
Sbjct: 67086 aagattcttgaggttccaa 67068
to top
>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete
              sequence
          Length = 131692

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      aatgttttgaagagcttgt 23
              |||||||||||||||||||
Sbjct: 124548 aatgttttgaagagcttgt 124566
to top
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0556A11
          Length = 138096

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aagattcttgaggttccaa 46
              |||||||||||||||||||
Sbjct: 134121 aagattcttgaggttccaa 134103
to top
>gb|AF147259.1|F10A2 Arabidopsis thaliana BAC F10A2
          Length = 123080

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    aaacagaagcatgagaaga 109
             |||||||||||||||||||
Sbjct: 47966 aaacagaagcatgagaaga 47984
to top
>gb|AC124387.5| Mus musculus BAC clone RP24-426N3 from chromosome 13, complete sequence
          Length = 159689

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    gcatgagaagagtggggga 117
             |||||||||||||||||||
Sbjct: 52120 gcatgagaagagtggggga 52138
to top
>gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome 13, complete sequence
          Length = 219890

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    gcatgagaagagtggggga 117
             |||||||||||||||||||
Sbjct: 26936 gcatgagaagagtggggga 26918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,016,388
Number of Sequences: 3902068
Number of extensions: 1016388
Number of successful extensions: 61046
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60921
Number of HSP's gapped (non-prelim): 125
length of query: 127
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 106
effective length of database: 17,151,101,840
effective search space: 1818016795040
effective search space used: 1818016795040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top