Clone Name | basd3b09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472371.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 Score = 341 bits (172), Expect = 1e-90 Identities = 337/392 (85%) Strand = Plus / Plus Query: 53 ctgccgctgctggtgatctcggcgctgttcgcgcagatcagcgcgtcggatccgctgttc 112 ||||||||||| || |||| |||||| ||| |||||| |||| || |||||||||||| Sbjct: 22 ctgccgctgcttctgctctccgcgctgctcgtccagatccgcgcctccgatccgctgttc 81 Query: 113 cacgagtccttcgacgagagcttcgacgggagctggatcgtgtccggcaaggatgagtac 172 | ||| | ||||||||||||||||| ||||| ||| | | ||||| ||||| || ||| Sbjct: 82 tatgagccgttcgacgagagcttcgaggggaggtgggttctctccgggaaggacgactac 141 Query: 173 aaaggtgcatggaagcactcgaagagtgatggccatgaagactatggcctccttgttagt 232 ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 142 aaaggtgtatggaagcacgaaaagagtgatggacatgaagactatggcctgcttgttagt 201 Query: 233 gagccagccaggaaatatgccataatcaaagagcttgattaccctgttactttgaaggac 292 ||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct: 202 gagaaggccaagaaatatgccataatcaaggagcttgatgagcctgttactttgaaggat 261 Query: 293 aagacagttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgct 352 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 gggactgttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgca 321 Query: 353 tatatcaagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgat 412 ||| | |||||||| |||||||||| || | |||| | |||||||| ||||| ||||| Sbjct: 322 tatcttaagtacattcgtcctcaggatgctgcatgggatgccaaggagtttgataatgag 381 Query: 413 actccatacacaattatgtttggtcctgacaa 444 ||||| ||||| |||||||||||||||||||| Sbjct: 382 actccttacactattatgtttggtcctgacaa 413
>dbj|AK069118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D14, full insert sequence Length = 2059 Score = 341 bits (172), Expect = 1e-90 Identities = 337/392 (85%) Strand = Plus / Plus Query: 53 ctgccgctgctggtgatctcggcgctgttcgcgcagatcagcgcgtcggatccgctgttc 112 ||||||||||| || |||| |||||| ||| |||||| |||| || |||||||||||| Sbjct: 128 ctgccgctgcttctgctctccgcgctgctcgtccagatccgcgcctccgatccgctgttc 187 Query: 113 cacgagtccttcgacgagagcttcgacgggagctggatcgtgtccggcaaggatgagtac 172 | ||| | ||||||||||||||||| ||||| ||| | | ||||| ||||| || ||| Sbjct: 188 tatgagccgttcgacgagagcttcgaggggaggtgggttctctccgggaaggacgactac 247 Query: 173 aaaggtgcatggaagcactcgaagagtgatggccatgaagactatggcctccttgttagt 232 ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 248 aaaggtgtatggaagcacgaaaagagtgatggacatgaagactatggcctgcttgttagt 307 Query: 233 gagccagccaggaaatatgccataatcaaagagcttgattaccctgttactttgaaggac 292 ||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct: 308 gagaaggccaagaaatatgccataatcaaggagcttgatgagcctgttactttgaaggat 367 Query: 293 aagacagttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgct 352 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 gggactgttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgca 427 Query: 353 tatatcaagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgat 412 ||| | |||||||| |||||||||| || | |||| | |||||||| ||||| ||||| Sbjct: 428 tatcttaagtacattcgtcctcaggatgctgcatgggatgccaaggagtttgataatgag 487 Query: 413 actccatacacaattatgtttggtcctgacaa 444 ||||| ||||| |||||||||||||||||||| Sbjct: 488 actccttacactattatgtttggtcctgacaa 519
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 281 bits (142), Expect = 1e-72 Identities = 238/270 (88%) Strand = Plus / Minus Query: 175 aggtgcatggaagcactcgaagagtgatggccatgaagactatggcctccttgttagtga 234 ||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 78803 aggtgtatggaagcacgaaaagagtgatggacatgaagactatggcctgcttgttagtga 78744 Query: 235 gccagccaggaaatatgccataatcaaagagcttgattaccctgttactttgaaggacaa 294 | |||| |||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct: 78743 gaaggccaagaaatatgccataatcaaggagcttgatgagcctgttactttgaaggatgg 78684 Query: 295 gacagttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgctta 354 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 78683 gactgttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgcata 78624 Query: 355 tatcaagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgatac 414 | | |||||||| |||||||||| || | |||| | |||||||| ||||| ||||| || Sbjct: 78623 tcttaagtacattcgtcctcaggatgctgcatgggatgccaaggagtttgataatgagac 78564 Query: 415 tccatacacaattatgtttggtcctgacaa 444 ||| ||||| |||||||||||||||||||| Sbjct: 78563 tccttacactattatgtttggtcctgacaa 78534 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 122 ttcgacgagagcttcgacgggagctggatcgtgtccggcaaggatgagtacaaaggt 178 ||||||||||||||||| ||||| ||| | | ||||| ||||| || ||||||||| Sbjct: 79801 ttcgacgagagcttcgaggggaggtgggttctctccgggaaggacgactacaaaggt 79745
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 281 bits (142), Expect = 1e-72 Identities = 238/270 (88%) Strand = Plus / Minus Query: 175 aggtgcatggaagcactcgaagagtgatggccatgaagactatggcctccttgttagtga 234 ||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 19923995 aggtgtatggaagcacgaaaagagtgatggacatgaagactatggcctgcttgttagtga 19923936 Query: 235 gccagccaggaaatatgccataatcaaagagcttgattaccctgttactttgaaggacaa 294 | |||| |||||||||||||||||| ||||||||| | ||||||||||||||||| Sbjct: 19923935 gaaggccaagaaatatgccataatcaaggagcttgatgagcctgttactttgaaggatgg 19923876 Query: 295 gacagttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgctta 354 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 19923875 gactgttgtcctgcagtttgaagtgaggcttcagaatggccttgagtgtggaggtgcata 19923816 Query: 355 tatcaagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgatac 414 | | |||||||| |||||||||| || | |||| | |||||||| ||||| ||||| || Sbjct: 19923815 tcttaagtacattcgtcctcaggatgctgcatgggatgccaaggagtttgataatgagac 19923756 Query: 415 tccatacacaattatgtttggtcctgacaa 444 ||| ||||| |||||||||||||||||||| Sbjct: 19923755 tccttacactattatgtttggtcctgacaa 19923726 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 122 ttcgacgagagcttcgacgggagctggatcgtgtccggcaaggatgagtacaaaggt 178 ||||||||||||||||| ||||| ||| | | ||||| ||||| || ||||||||| Sbjct: 19924993 ttcgacgagagcttcgaggggaggtgggttctctccgggaaggacgactacaaaggt 19924937
>emb|X77569.1|ZMCNXRNA Z.mays CNX mRNA Length = 1559 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 359 aagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgatactcca 418 ||||||||||| ||||||| || |||||| | |||||||| ||||| ||||| |||||| Sbjct: 8 aagtacatccgccctcaggatgctggatgggatgccaaggagtttgataatgagactcca 67 Query: 419 tacacaattatgtttggtcc 438 ||||| |||||||||||||| Sbjct: 68 tacactattatgtttggtcc 87
>dbj|AB196933.1| Glycine max Gm cnx-1 mRNA for calnexin, complete cds Length = 1786 Score = 79.8 bits (40), Expect = 7e-12 Identities = 103/124 (83%) Strand = Plus / Plus Query: 146 tggatcgtgtccggcaaggatgagtacaaaggtgcatggaagcactcgaagagtgatggc 205 ||||| || |||| |||||| || ||||| |||| |||||||| | ||||||||||| Sbjct: 247 tggattgtatccgacaaggaggattacaatggtgtctggaagcatgccaagagtgatggg 306 Query: 206 catgaagactatggcctccttgttagtgagccagccaggaaatatgccataatcaaagag 265 ||||| || ||||| || ||||||||||| | ||||||||||||||| ||| ||||||| Sbjct: 307 catgatgattatggacttcttgttagtgaacaagccaggaaatatgctatagtcaaagaa 366 Query: 266 cttg 269 |||| Sbjct: 367 cttg 370
>gb|AY112482.1| Zea mays CL2224_1 mRNA sequence Length = 1661 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 359 aagtacatccgtcctcaggctgtgggatggaacgccaaggactttgacaatgatactcca 418 ||||||||||| ||||||| || |||||| | |||||||| ||||| ||||| |||||| Sbjct: 8 aagtacatccgccctcaggatgctggatgggatgccaaggagtttgataatgagactcca 67 Query: 419 tacacaattatgtttggtcc 438 ||||| |||||||||||||| Sbjct: 68 tacactattatgtttggtcc 87
>gb|U20502.1|GMU20502 Glycine max calnexin mRNA, complete cds Length = 1919 Score = 79.8 bits (40), Expect = 7e-12 Identities = 103/124 (83%) Strand = Plus / Plus Query: 146 tggatcgtgtccggcaaggatgagtacaaaggtgcatggaagcactcgaagagtgatggc 205 ||||| || |||| |||||| || ||||| |||| |||||||| | ||||||||||| Sbjct: 187 tggattgtatccgacaaggaggattacaatggtgtctggaagcatgccaagagtgatggg 246 Query: 206 catgaagactatggcctccttgttagtgagccagccaggaaatatgccataatcaaagag 265 ||||| || ||||| || ||||||||||| | ||||||||||||||| ||| ||||||| Sbjct: 247 catgatgattatggacttcttgttagtgaacaagccaggaaatatgctatagtcaaagaa 306 Query: 266 cttg 269 |||| Sbjct: 307 cttg 310
>emb|Y17329.1|PSA17329 Pisum sativum mRNA for calnexin Length = 1951 Score = 75.8 bits (38), Expect = 1e-10 Identities = 104/126 (82%) Strand = Plus / Plus Query: 146 tggatcgtgtccggcaaggatgagtacaaaggtgcatggaagcactcgaagagtgatggc 205 |||||||| || |||||||| || ||||| |||| ||||||||| || |||||||| || Sbjct: 190 tggatcgtatctggcaaggaggaatacaatggtgtatggaagcattcaaagagtgaaggg 249 Query: 206 catgaagactatggcctccttgttagtgagccagccaggaaatatgccataatcaaagag 265 ||||| || | ||| || ||||| ||||| ||||| ||||| ||||| ||| | |||||| Sbjct: 250 catgatgattttggacttcttgtcagtgaaccagcaaggaagtatgctatagttaaagag 309 Query: 266 cttgat 271 |||||| Sbjct: 310 cttgat 315
>ref|NM_125573.2| Arabidopsis thaliana calcium ion binding AT5G61790 mRNA, complete cds Length = 1998 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 429 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 471
>gb|AY561519.1| Danio rerio acidic ribosomal protein P1 (rplP1) mRNA, complete cds Length = 498 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctggtg 67 ||||||||||||||||||||||| Sbjct: 301 tgctcctgctgccgctgctggtg 323
>gb|AC141864.7| Medicago truncatula clone mth2-21o24, complete sequence Length = 106571 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Minus Query: 393 ccaaggactttgacaatgatactccatacacaattatgtttggtcctgacaagtg 447 ||||||| |||||||| ||| |||| || | || |||||||||||||||||||| Sbjct: 100655 ccaaggaatttgacaacgattctccctattctatcatgtttggtcctgacaagtg 100601
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence Length = 117358 Score = 46.1 bits (23), Expect = 0.098 Identities = 32/35 (91%) Strand = Plus / Plus Query: 326 cagaatggccttgagtgtggaggtgcttatatcaa 360 |||||||||||||| ||||| ||||| |||||||| Sbjct: 90034 cagaatggccttgaatgtggtggtgcatatatcaa 90068 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 182 tggaagcactcgaagagtgatggccatgaagactatggcctccttgttagtgagccagcc 241 |||||||| || |||||||| || || || || | ||| || ||||||||||| ||||| Sbjct: 89890 tggaagcattctaagagtgaggggcacgacgattttggacttcttgttagtgaaccagca 89949 Query: 242 aggaaatatgccataatcaaagagcttga 270 ||||| || |||||| | ||||| ||||| Sbjct: 89950 aggaagtacgccatagttaaagaacttga 89978
>gb|AY050777.1| Arabidopsis thaliana At5g61790 mRNA sequence Length = 1908 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 425 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 467
>emb|Z18242.1|ATCALHOM Arabidopsis thaliana calnexin homolog Length = 1858 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 402 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 444
>gb|AY114669.1| Arabidopsis thaliana calnexin-like protein precursor (At5g61790) mRNA, complete cds Length = 1671 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 316 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 358
>gb|AY065007.1| Arabidopsis thaliana AT5g61790/mac9_90 mRNA sequence Length = 1910 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 427 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 469
>gb|AY059880.1| Arabidopsis thaliana calnexin homolog precursor (MAC9.11) mRNA, complete cds Length = 1919 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 427 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 469
>ref|NM_200029.1| Danio rerio ribosomal protein, large, P1 (rplp1), mRNA Length = 520 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctggtg 67 ||||||||||||||||||||||| Sbjct: 325 tgctcctgctgccgctgctggtg 347
>gb|AY086864.1| Arabidopsis thaliana clone 2869 mRNA, complete sequence Length = 1897 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Plus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 429 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 471
>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9 Length = 57246 Score = 46.1 bits (23), Expect = 0.098 Identities = 38/43 (88%) Strand = Plus / Minus Query: 335 cttgagtgtggaggtgcttatatcaagtacatccgtcctcagg 377 ||||||||||| |||||||| | |||||| |||||||||||| Sbjct: 34363 cttgagtgtggtggtgcttacttgaagtacctccgtcctcagg 34321
>gb|BC062852.1| Danio rerio ribosomal protein, large, P1, mRNA (cDNA clone MGC:77776 IMAGE:7001140), complete cds Length = 520 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctggtg 67 ||||||||||||||||||||||| Sbjct: 325 tgctcctgctgccgctgctggtg 347
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 60 tgctggtgatctcggcgctgttcgcg 85 |||||| ||||||||||||||||||| Sbjct: 2281277 tgctggcgatctcggcgctgttcgcg 2281252
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 gtgctcctgctgccgctgctg 64 ||||||||||||||||||||| Sbjct: 423232 gtgctcctgctgccgctgctg 423212
>gb|AY810791.1| Schistosoma japonicum SJCHGC06234 protein mRNA, partial cds Length = 846 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 tacacaattatgtttggtcctgacaagtg 447 |||||||||||||| ||||| |||||||| Sbjct: 529 tacacaattatgttcggtcccgacaagtg 557
>emb|Z22181.2|CEZK632 Caenorhabditis elegans Cosmid ZK632, complete sequence Length = 36000 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 422 acaattatgtttggtcctgacaagtgcgg 450 ||||||||||| || |||||||||||||| Sbjct: 19456 acaattatgttcggacctgacaagtgcgg 19428
>gb|AY861215.1| Cottus gobio microsatellite Cott348 sequence Length = 549 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctggtgat 69 |||||||||||| |||||||||||| Sbjct: 338 tgctcctgctgctgctgctggtgat 362
>gb|AC105101.8| Homo sapiens chromosome 18, clone RP11-246E12, complete sequence Length = 172626 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 agccagccaggaaatatgcca 254 ||||||||||||||||||||| Sbjct: 107495 agccagccaggaaatatgcca 107515
>ref|NM_066775.3| Caenorhabditis elegans ZK632.6 (Calnexin) mRNA, complete cds Length = 2122 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 422 acaattatgtttggtcctgacaagtgcgg 450 ||||||||||| || |||||||||||||| Sbjct: 538 acaattatgttcggacctgacaagtgcgg 566
>gb|AF030342.1|AF030342 Schistosoma japonicum calcium-binding protein Sj66 mRNA, complete cds Length = 2159 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 tacacaattatgtttggtcctgacaagtg 447 |||||||||||||| ||||| |||||||| Sbjct: 522 tacacaattatgttcggtcccgacaagtg 550
>gb|AF025955.1|AF025955 Schistosoma japonicum calcium-binding protein Sj66 precursor, mRNA, complete cds Length = 2156 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 419 tacacaattatgtttggtcctgacaagtg 447 |||||||||||||| ||||| |||||||| Sbjct: 523 tacacaattatgttcggtcccgacaagtg 551
>gb|AY450929.1| Chlamydomonas reinhardtii minus agglutinin (SAD1) gene, complete cds Length = 19311 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 41 gcggtgctcctgctgccgctgctgg 65 |||||||| |||||||||||||||| Sbjct: 8561 gcggtgctgctgctgccgctgctgg 8537
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 43 ggtgctcctgctgccgctgctggtgatct 71 |||||| |||||| ||||||||||||||| Sbjct: 740068 ggtgctgctgctgtcgctgctggtgatct 740096
>dbj|D78590.1| Rana rugosa mRNA for calnexin, complete cds Length = 2142 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 423 caattatgtttggtcctgacaagtg 447 |||| |||||||||||||||||||| Sbjct: 642 caatcatgtttggtcctgacaagtg 666
>ref|NM_188415.1| Oryza sativa (japonica cultivar-group), Ozsa8141 predicted mRNA Length = 963 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 499 tgctcctgctgccgctgctg 480
>ref|XM_469996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 432 tgctcctgctgccgctgctg 451
>ref|NM_001030620.1| Gallus gallus calnexin (CANX), mRNA Length = 3173 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 413 actccatacacaattatgtttggtcctgacaa 444 ||||||||||| || |||||||| |||||||| Sbjct: 627 actccatacacgatcatgtttggccctgacaa 658
>ref|XM_589913.2| PREDICTED: Bos taurus similar to CGI-01 protein isoform 1, transcript variant 1 (LOC512401), mRNA Length = 885 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gctcctgctgccgctgctgg 65 |||||||||||||||||||| Sbjct: 337 gctcctgctgccgctgctgg 356
>ref|XM_878613.1| PREDICTED: Bos taurus similar to CGI-01 protein isoform 1, transcript variant 3 (LOC512401), mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gctcctgctgccgctgctgg 65 |||||||||||||||||||| Sbjct: 346 gctcctgctgccgctgctgg 365
>ref|XM_866494.1| PREDICTED: Bos taurus similar to CGI-01 protein isoform 1, transcript variant 2 (LOC512401), mRNA Length = 1185 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gctcctgctgccgctgctgg 65 |||||||||||||||||||| Sbjct: 637 gctcctgctgccgctgctgg 656
>ref|XM_590876.2| PREDICTED: Bos taurus similar to GDNF family receptor alpha 3 preproprotein (LOC540009), mRNA Length = 1392 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 44 tgctcctgctgccgctgctg 63
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 33261261 tgctcctgctgccgctgctg 33261280
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 17777 tgctcctgctgccgctgctg 17796
>ref|XM_851897.1| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 8 (LOC490941), mRNA Length = 3332 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 320 tgctcctgctgccgctgctg 301
>ref|XM_851856.1| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 7 (LOC490941), mRNA Length = 3783 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 771 tgctcctgctgccgctgctg 752
>ref|XM_851817.1| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 6 (LOC490941), mRNA Length = 3185 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 320 tgctcctgctgccgctgctg 301
>ref|XM_851773.1| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 5 (LOC490941), mRNA Length = 3329 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 320 tgctcctgctgccgctgctg 301
>ref|XM_851732.1| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 4 (LOC490941), mRNA Length = 3675 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 717 tgctcctgctgccgctgctg 698
>ref|XM_548064.2| PREDICTED: Canis familiaris similar to Histone deacetylase 5 (HD5) (Antigen NY-CO-9), transcript variant 1 (LOC490941), mRNA Length = 3729 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 717 tgctcctgctgccgctgctg 698
>ref|XM_850054.1| PREDICTED: Canis familiaris similar to solute carrier family 27 member 3 (LOC612311), mRNA Length = 1953 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 26 tgctcctgctgccgctgctg 45
>emb|AL589906.3| Human DNA sequence from clone RP11-113N19 on chromosome 6 Contains the 5' part of a novel gene, complete sequence Length = 41280 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 4980 tgctcctgctgccgctgctg 4999
>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two novel genes and three putative novel pseudogenes, complete sequence Length = 189319 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gccagccaggaaatatgcca 254 |||||||||||||||||||| Sbjct: 16003 gccagccaggaaatatgcca 15984
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctcctgctgccgctgctggt 66 |||||||||||||||||||| Sbjct: 235411 ctcctgctgccgctgctggt 235392 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctcctgctgccgctgctggt 66 |||||||||||||||||||| Sbjct: 235306 ctcctgctgccgctgctggt 235287
>gb|AY974334.1| Plutella xylostella pheromone biosynthesis activating neuropeptide receptor mRNA, complete cds Length = 1017 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 ggtgatctcggcgctgttcgcgcagatc 91 ||||||||||| ||||| |||||||||| Sbjct: 648 ggtgatctcggtgctgtacgcgcagatc 675
>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence Length = 190809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gaggggaggaggatgacgggaggg 37 |||||||||||||||| ||||||| Sbjct: 44923 gaggggaggaggatgaggggaggg 44946
>emb|AJ719429.1| Gallus gallus mRNA for hypothetical protein, clone 2d15 Length = 3173 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 413 actccatacacaattatgtttggtcctgacaa 444 ||||||||||| || |||||||| |||||||| Sbjct: 627 actccatacacgatcatgtttggccctgacaa 658
>emb|CR860060.1| Pongo pygmaeus mRNA; cDNA DKFZp469O086 (from clone DKFZp469O086) Length = 625 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ctgctgccgctgctggtgat 69 |||||||||||||||||||| Sbjct: 588 ctgctgccgctgctggtgat 569
>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown, complete sequence Length = 188107 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ggggaggaggatgacgggag 35 |||||||||||||||||||| Sbjct: 179773 ggggaggaggatgacgggag 179754
>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173558 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtgatct 71 ||||||||| |||||||||||||| Sbjct: 112543 tcctgctgcggctgctggtgatct 112520
>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173386 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtgatct 71 ||||||||| |||||||||||||| Sbjct: 17472 tcctgctgcggctgctggtgatct 17449
>gb|AC093106.3| Homo sapiens chromosome 7 clone CTD-2502H6, complete sequence Length = 177806 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 caggctgtgggatggaacgc 393 |||||||||||||||||||| Sbjct: 48619 caggctgtgggatggaacgc 48600
>gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, complete sequence Length = 181733 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gctcctgctgccgctgctgg 65 |||||||||||||||||||| Sbjct: 115829 gctcctgctgccgctgctgg 115848
>ref|NM_139733.2| Drosophila melanogaster CG5537-RA (CG5537), mRNA Length = 1106 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtgatct 71 ||||||||| |||||||||||||| Sbjct: 189 tcctgctgcggctgctggtgatct 166
>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence Length = 193553 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ctcaggctgtgggatggaac 391 |||||||||||||||||||| Sbjct: 181374 ctcaggctgtgggatggaac 181355
>gb|AY069484.1| Drosophila melanogaster LD21741 full length cDNA Length = 1114 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtgatct 71 ||||||||| |||||||||||||| Sbjct: 179 tcctgctgcggctgctggtgatct 156
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acgagtccttcgacgagagc 133 |||||||||||||||||||| Sbjct: 606372 acgagtccttcgacgagagc 606391
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 33351771 tgctcctgctgccgctgctg 33351790
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 gcggtgctcctgctgccgctgctg 64 ||||||||| |||||||||||||| Sbjct: 4174930 gcggtgctcgtgctgccgctgctg 4174907
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 6139874 tgctcctgctgccgctgctg 6139893
>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone BACR04G19, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 104567 tgctcctgctgccgctgctg 104548
>dbj|AB091476.1| Closterium peracerosum-strigosum-littorale complex CpMADS1 mRNA for MADS-box protein CpMADS1, partial cds Length = 696 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 407 tgctcctgctgccgctgctg 388
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence Length = 162694 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 caggctgtgggatggaacgc 393 |||||||||||||||||||| Sbjct: 135637 caggctgtgggatggaacgc 135618
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cggcgctgttcgcgcagatc 91 |||||||||||||||||||| Sbjct: 896622 cggcgctgttcgcgcagatc 896603
>gb|AY116644.1| Streptomyces viridifaciens amino acid aminotransfease gene, partial cds; ketol-acid reductioisomerase, acetolactate synthetase small subunit, acetolactate synthetase large subunit, complete cds; azoxy antibiotic valanimycin gene cluster, complete sequence; and putative transferase, and putative secreted protein genes, complete cds Length = 24613 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtg 67 |||||||||||||||||||| Sbjct: 22965 tcctgctgccgctgctggtg 22946
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tgacgggagggcgcgcggtg 46 |||||||||||||||||||| Sbjct: 1842453 tgacgggagggcgcgcggtg 1842434 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gcgcgcggtgctcctgctgc 56 |||||||||||||||||||| Sbjct: 1648289 gcgcgcggtgctcctgctgc 1648308 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 gcgcgcggtgctcctgctgccgct 60 ||||||| |||||||||||||||| Sbjct: 1030294 gcgcgcgctgctcctgctgccgct 1030317
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 2072 tgctcctgctgccgctgctg 2091
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 164231 tgctcctgctgccgctgctg 164250
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 gcggtgctcctgctgccgctgctg 64 ||||||||| |||||||||||||| Sbjct: 84944 gcggtgctcgtgctgccgctgctg 84921
>dbj|AK120776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009G15, full insert sequence Length = 1343 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 677 tgctcctgctgccgctgctg 658
>dbj|AK109099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A12, full insert sequence Length = 1237 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 173 tgctcctgctgccgctgctg 154
>dbj|AK070086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040E15, full insert sequence Length = 2100 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 gcggtgctcctgctgccgctgctg 64 ||||||||| |||||||||||||| Sbjct: 281 gcggtgctcgtgctgccgctgctg 304
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctgccgctgctggtgatct 71 |||||||||||||||||||| Sbjct: 1758869 gctgccgctgctggtgatct 1758850
>dbj|AK063386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G09, full insert sequence Length = 2760 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 gcggtgctcctgctgccgctgctg 64 ||||||||| |||||||||||||| Sbjct: 92 gcggtgctcgtgctgccgctgctg 115
>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete sequence Length = 284268 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcctgctgccgctgctggtgatct 71 ||||||||| |||||||||||||| Sbjct: 281780 tcctgctgcggctgctggtgatct 281757
>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete sequence Length = 299331 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgctcctgctgccgctgctg 64 |||||||||||||||||||| Sbjct: 157044 tgctcctgctgccgctgctg 157025
>gb|AC132321.2| Mus musculus BAC clone RP24-261H23 from 8, complete sequence Length = 173138 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ggaggggaggaggatgacgggagg 36 ||||||||||||||||| |||||| Sbjct: 123506 ggaggggaggaggatgaggggagg 123529 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,515,814 Number of Sequences: 3902068 Number of extensions: 3515814 Number of successful extensions: 82403 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81701 Number of HSP's gapped (non-prelim): 702 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)