Clone Name | basd3b05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_004105.3| Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 1, mRNA Length = 2936 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ggctgcccctccacacaacct 40 ||||||||||||||||||||| Sbjct: 58 ggctgcccctccacacaacct 78
>emb|AJ720134.1| Gallus gallus mRNA for hypothetical protein, clone 11d15 Length = 747 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 cggctctccgccgcctccgcc 71 ||||||||||||||||||||| Sbjct: 33 cggctctccgccgcctccgcc 53
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.18 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 ccacggctctccgccgcctccgccg 72 ||||||||| ||||||||||||||| Sbjct: 3501025 ccacggctcgccgccgcctccgccg 3501001
>gb|AC096549.1| Homo sapiens BAC clone RP11-5K15 from 2, complete sequence Length = 37239 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 ggctgcccctccacacaacct 40 ||||||||||||||||||||| Sbjct: 9212 ggctgcccctccacacaacct 9192
>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete sequence Length = 179661 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 cggctctccgccgcctccgcc 71 ||||||||||||||||||||| Sbjct: 122566 cggctctccgccgcctccgcc 122546
>gb|AC152889.1| Ornithorhynchus anatinus chromosome UNK clone OABb-513A1, complete sequence Length = 115833 Score = 40.1 bits (20), Expect = 0.72 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 gcccctccacacaaccttctccctccac 51 |||||||||||| |||| |||||||||| Sbjct: 96865 gcccctccacaccacctgctccctccac 96892
>ref|XM_507921.1| PREDICTED: Pan troglodytes similar to ring finger protein 153; membrane-associated RING-CH protein V (LOC450607), mRNA Length = 1053 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 118 gctctccgccgcctccgccg 137
>emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on chromosome 10 Contains the 5' end of the gene for KIAA0940 protein, a succinate dehydrogenase complex pseudogene, the 5' end of a novel gene (FLJ20445), a nucleolar protein family A member 2 pseudogene 1 (NOLA2P1) and a CpG island, complete sequence Length = 213648 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 209206 gctctccgccgcctccgccg 209225
>emb|CR622689.1| full-length cDNA clone CS0DJ002YN03 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1650 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 109 gctctccgccgcctccgccg 128
>emb|CR618394.1| full-length cDNA clone CS0DA006YB07 of Neuroblastoma of Homo sapiens (human) Length = 1502 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 78 gctctccgccgcctccgccg 97
>ref|NM_017824.4| Homo sapiens membrane-associated ring finger (C3HC4) 5 (MARCH5), mRNA Length = 3941 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 132 gctctccgccgcctccgccg 151
>dbj|AK000452.1| Homo sapiens cDNA FLJ20445 fis, clone KAT05170 Length = 1522 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 134 gctctccgccgcctccgccg 153
>gb|BC015480.1| Homo sapiens membrane-associated ring finger (C3HC4) 5, mRNA (cDNA clone MGC:8860 IMAGE:3905766), complete cds Length = 3896 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgccg 72 |||||||||||||||||||| Sbjct: 92 gctctccgccgcctccgccg 111
>ref|NM_119067.1| Arabidopsis thaliana ANAC075; transcription factor AT4G29230 (ANAC075) mRNA, complete cds Length = 1497 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 744 ctctccgccgcctccgccg 726
>gb|AC162942.5| Mus musculus BAC clone RP23-80K12 from chromosome 14, complete sequence Length = 227944 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 tgaaggccgcggctgcccctcca 32 |||||||| |||||||||||||| Sbjct: 68311 tgaaggccacggctgcccctcca 68333
>ref|XM_466228.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1488 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 120 gctctccgccgcctccgcc 138
>ref|XM_870788.1| PREDICTED: Bos taurus hypothetical protein LOC618454 (LOC618454), mRNA Length = 945 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 546 gctctccgccgcctccgcc 528
>gb|AC127584.3| Mus musculus BAC clone RP24-126H1 from chromosome 14, complete sequence Length = 154930 Score = 38.2 bits (19), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 tgaaggccgcggctgcccctcca 32 |||||||| |||||||||||||| Sbjct: 105270 tgaaggccacggctgcccctcca 105292
>gb|BC031341.1| Homo sapiens family with sequence similarity 101, member B, mRNA (cDNA clone MGC:45871 IMAGE:4908279), complete cds Length = 905 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 245 gctctccgccgcctccgcc 227
>ref|XM_499882.1| Yarrowia lipolytica CLIB122, YALI0A08646g predicted mRNA Length = 1089 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 93 ctctccgccgcctccgccg 75
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 139907 ctctccgccgcctccgccg 139889
>ref|NM_182705.1| Homo sapiens family with sequence similarity 101, member B (FAM101B), mRNA Length = 875 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 215 gctctccgccgcctccgcc 197
>gb|AF347666.1|AF347666 Glycine max translation initiation factor IF1 (infA) mRNA, complete cds; nuclear gene for chloroplast product Length = 776 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 170 ctctccgccgcctccgccg 188
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 2398942 ctctccgccgcctccgccg 2398960
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 2914713 ctctccgccgcctccgccg 2914731
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 30787783 ctctccgccgcctccgccg 30787801 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 21193235 gctctccgccgcctccgcc 21193217 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 18134900 ctctccgccgcctccgccg 18134918
>gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p11.2-p21, complete sequence Length = 156880 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 gccgcggctgcccctccac 33 ||||||||||||||||||| Sbjct: 12215 gccgcggctgcccctccac 12233
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 77352 ctctccgccgcctccgccg 77370
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 127930 ctctccgccgcctccgccg 127948
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 3865790 ctctccgccgcctccgccg 3865808
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 85000 ctctccgccgcctccgccg 85018
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 58301 ctctccgccgcctccgccg 58319
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20 Length = 129595 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 99951 gctctccgccgcctccgcc 99933
>dbj|AK122093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124K14, full insert sequence Length = 504 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 291 ctctccgccgcctccgccg 309
>dbj|AK105386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H02, full insert sequence Length = 583 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 295 ctctccgccgcctccgccg 313
>dbj|AK072724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139K17, full insert sequence Length = 1488 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gctctccgccgcctccgcc 71 ||||||||||||||||||| Sbjct: 121 gctctccgccgcctccgcc 139
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ctctccgccgcctccgccg 72 ||||||||||||||||||| Sbjct: 854886 ctctccgccgcctccgccg 854904
>emb|AL732616.3| Mouse DNA sequence from clone RP23-466D3 on chromosome 2, complete sequence Length = 123372 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 caaccttctccctccacgg 53 ||||||||||||||||||| Sbjct: 12019 caaccttctccctccacgg 12001 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 602,231 Number of Sequences: 3902068 Number of extensions: 602231 Number of successful extensions: 59130 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58488 Number of HSP's gapped (non-prelim): 642 length of query: 72 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 51 effective length of database: 17,151,101,840 effective search space: 874706193840 effective search space used: 874706193840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)