ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_004105.3| Homo sapiens EGF-containing fibulin-like extrac... 42 0.18
2emb|AJ720134.1| Gallus gallus mRNA for hypothetical protein, clo... 42 0.18
3gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.18
4gb|AC096549.1| Homo sapiens BAC clone RP11-5K15 from 2, complete... 42 0.18
5gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromos... 42 0.18
6gb|AC152889.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 0.72
7ref|XM_507921.1| PREDICTED: Pan troglodytes similar to ring fing... 40 0.72
8emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on ch... 40 0.72
9emb|CR622689.1| full-length cDNA clone CS0DJ002YN03 of T cells (... 40 0.72
10emb|CR618394.1| full-length cDNA clone CS0DA006YB07 of Neuroblas... 40 0.72
11ref|NM_017824.4| Homo sapiens membrane-associated ring finger (C... 40 0.72
12dbj|AK000452.1| Homo sapiens cDNA FLJ20445 fis, clone KAT05170 40 0.72
13gb|BC015480.1| Homo sapiens membrane-associated ring finger (C3H... 40 0.72
14ref|NM_119067.1| Arabidopsis thaliana ANAC075; transcription fac... 38 2.9
15gb|AC162942.5| Mus musculus BAC clone RP23-80K12 from chromosome... 38 2.9
16ref|XM_466228.1| Oryza sativa (japonica cultivar-group), mRNA 38 2.9
17ref|XM_870788.1| PREDICTED: Bos taurus hypothetical protein LOC6... 38 2.9
18gb|AC127584.3| Mus musculus BAC clone RP24-126H1 from chromosome... 38 2.9
19gb|BC031341.1| Homo sapiens family with sequence similarity 101,... 38 2.9
20ref|XM_499882.1| Yarrowia lipolytica CLIB122, YALI0A08646g predi... 38 2.9
21emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 38 2.9
22ref|NM_182705.1| Homo sapiens family with sequence similarity 10... 38 2.9
23gb|AF347666.1|AF347666 Glycine max translation initiation factor... 38 2.9
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
27gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p... 38 2.9
28dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
29dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
30dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 2.9
31dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
32dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
33dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.9
34dbj|AK122093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.9
35dbj|AK105386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.9
36dbj|AK072724.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.9
37emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 38 2.9
38emb|AL732616.3| Mouse DNA sequence from clone RP23-466D3 on chro... 38 2.9

>ref|NM_004105.3| Homo sapiens EGF-containing fibulin-like extracellular matrix
          protein 1 (EFEMP1), transcript variant 1, mRNA
          Length = 2936

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 ggctgcccctccacacaacct 40
          |||||||||||||||||||||
Sbjct: 58 ggctgcccctccacacaacct 78



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>emb|AJ720134.1| Gallus gallus mRNA for hypothetical protein, clone 11d15
          Length = 747

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 51 cggctctccgccgcctccgcc 71
          |||||||||||||||||||||
Sbjct: 33 cggctctccgccgcctccgcc 53



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 48      ccacggctctccgccgcctccgccg 72
               ||||||||| |||||||||||||||
Sbjct: 3501025 ccacggctcgccgccgcctccgccg 3501001



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>gb|AC096549.1| Homo sapiens BAC clone RP11-5K15 from 2, complete sequence
          Length = 37239

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 20   ggctgcccctccacacaacct 40
            |||||||||||||||||||||
Sbjct: 9212 ggctgcccctccacacaacct 9192



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>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete
              sequence
          Length = 179661

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     cggctctccgccgcctccgcc 71
              |||||||||||||||||||||
Sbjct: 122566 cggctctccgccgcctccgcc 122546



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>gb|AC152889.1| Ornithorhynchus anatinus chromosome UNK clone OABb-513A1, complete
             sequence
          Length = 115833

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 24    gcccctccacacaaccttctccctccac 51
             |||||||||||| |||| ||||||||||
Sbjct: 96865 gcccctccacaccacctgctccctccac 96892



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>ref|XM_507921.1| PREDICTED: Pan troglodytes similar to ring finger protein 153;
           membrane-associated RING-CH protein V (LOC450607), mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gctctccgccgcctccgccg 72
           ||||||||||||||||||||
Sbjct: 118 gctctccgccgcctccgccg 137



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>emb|AL158040.14| Human DNA sequence from clone RP11-360G10 on chromosome 10 Contains the
              5' end of the gene for KIAA0940 protein, a succinate
              dehydrogenase complex pseudogene, the 5' end of a novel
              gene (FLJ20445), a nucleolar protein family A member 2
              pseudogene 1 (NOLA2P1) and a CpG island, complete sequence
          Length = 213648

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gctctccgccgcctccgccg 72
              ||||||||||||||||||||
Sbjct: 209206 gctctccgccgcctccgccg 209225



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>emb|CR622689.1| full-length cDNA clone CS0DJ002YN03 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1650

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gctctccgccgcctccgccg 72
           ||||||||||||||||||||
Sbjct: 109 gctctccgccgcctccgccg 128



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>emb|CR618394.1| full-length cDNA clone CS0DA006YB07 of Neuroblastoma of Homo
          sapiens (human)
          Length = 1502

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 gctctccgccgcctccgccg 72
          ||||||||||||||||||||
Sbjct: 78 gctctccgccgcctccgccg 97



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>ref|NM_017824.4| Homo sapiens membrane-associated ring finger (C3HC4) 5 (MARCH5),
           mRNA
          Length = 3941

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gctctccgccgcctccgccg 72
           ||||||||||||||||||||
Sbjct: 132 gctctccgccgcctccgccg 151



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>dbj|AK000452.1| Homo sapiens cDNA FLJ20445 fis, clone KAT05170
          Length = 1522

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gctctccgccgcctccgccg 72
           ||||||||||||||||||||
Sbjct: 134 gctctccgccgcctccgccg 153



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>gb|BC015480.1| Homo sapiens membrane-associated ring finger (C3HC4) 5, mRNA (cDNA
           clone MGC:8860 IMAGE:3905766), complete cds
          Length = 3896

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  gctctccgccgcctccgccg 72
           ||||||||||||||||||||
Sbjct: 92  gctctccgccgcctccgccg 111



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>ref|NM_119067.1| Arabidopsis thaliana ANAC075; transcription factor AT4G29230
           (ANAC075) mRNA, complete cds
          Length = 1497

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  ctctccgccgcctccgccg 72
           |||||||||||||||||||
Sbjct: 744 ctctccgccgcctccgccg 726



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>gb|AC162942.5| Mus musculus BAC clone RP23-80K12 from chromosome 14, complete sequence
          Length = 227944

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 10    tgaaggccgcggctgcccctcca 32
             |||||||| ||||||||||||||
Sbjct: 68311 tgaaggccacggctgcccctcca 68333



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>ref|XM_466228.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 53  gctctccgccgcctccgcc 71
           |||||||||||||||||||
Sbjct: 120 gctctccgccgcctccgcc 138



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>ref|XM_870788.1| PREDICTED: Bos taurus hypothetical protein LOC618454 (LOC618454),
           mRNA
          Length = 945

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  gctctccgccgcctccgcc 71
           |||||||||||||||||||
Sbjct: 546 gctctccgccgcctccgcc 528



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>gb|AC127584.3| Mus musculus BAC clone RP24-126H1 from chromosome 14, complete sequence
          Length = 154930

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 10     tgaaggccgcggctgcccctcca 32
              |||||||| ||||||||||||||
Sbjct: 105270 tgaaggccacggctgcccctcca 105292



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>gb|BC031341.1| Homo sapiens family with sequence similarity 101, member B, mRNA
           (cDNA clone MGC:45871 IMAGE:4908279), complete cds
          Length = 905

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  gctctccgccgcctccgcc 71
           |||||||||||||||||||
Sbjct: 245 gctctccgccgcctccgcc 227



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>ref|XM_499882.1| Yarrowia lipolytica CLIB122, YALI0A08646g predicted mRNA
          Length = 1089

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 54 ctctccgccgcctccgccg 72
          |||||||||||||||||||
Sbjct: 93 ctctccgccgcctccgccg 75



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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     ctctccgccgcctccgccg 72
              |||||||||||||||||||
Sbjct: 139907 ctctccgccgcctccgccg 139889



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>ref|NM_182705.1| Homo sapiens family with sequence similarity 101, member B
           (FAM101B), mRNA
          Length = 875

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  gctctccgccgcctccgcc 71
           |||||||||||||||||||
Sbjct: 215 gctctccgccgcctccgcc 197



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>gb|AF347666.1|AF347666 Glycine max translation initiation factor IF1 (infA) mRNA, complete
           cds; nuclear gene for chloroplast product
          Length = 776

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ctctccgccgcctccgccg 72
           |||||||||||||||||||
Sbjct: 170 ctctccgccgcctccgccg 188



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 54      ctctccgccgcctccgccg 72
               |||||||||||||||||||
Sbjct: 2398942 ctctccgccgcctccgccg 2398960



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 54      ctctccgccgcctccgccg 72
               |||||||||||||||||||
Sbjct: 2914713 ctctccgccgcctccgccg 2914731



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 54       ctctccgccgcctccgccg 72
                |||||||||||||||||||
Sbjct: 30787783 ctctccgccgcctccgccg 30787801



 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 53       gctctccgccgcctccgcc 71
                |||||||||||||||||||
Sbjct: 21193235 gctctccgccgcctccgcc 21193217



 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 54       ctctccgccgcctccgccg 72
                |||||||||||||||||||
Sbjct: 18134900 ctctccgccgcctccgccg 18134918



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>gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p11.2-p21, complete sequence
          Length = 156880

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    gccgcggctgcccctccac 33
             |||||||||||||||||||
Sbjct: 12215 gccgcggctgcccctccac 12233



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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0095O23
          Length = 159792

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ctctccgccgcctccgccg 72
             |||||||||||||||||||
Sbjct: 77352 ctctccgccgcctccgccg 77370



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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0487D09
          Length = 161531

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     ctctccgccgcctccgccg 72
              |||||||||||||||||||
Sbjct: 127930 ctctccgccgcctccgccg 127948



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 54      ctctccgccgcctccgccg 72
               |||||||||||||||||||
Sbjct: 3865790 ctctccgccgcctccgccg 3865808



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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0050B07
          Length = 142134

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ctctccgccgcctccgccg 72
             |||||||||||||||||||
Sbjct: 85000 ctctccgccgcctccgccg 85018



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>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0047E05
          Length = 184323

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ctctccgccgcctccgccg 72
             |||||||||||||||||||
Sbjct: 58301 ctctccgccgcctccgccg 58319



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>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    gctctccgccgcctccgcc 71
             |||||||||||||||||||
Sbjct: 99951 gctctccgccgcctccgcc 99933



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>dbj|AK122093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124K14, full
           insert sequence
          Length = 504

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ctctccgccgcctccgccg 72
           |||||||||||||||||||
Sbjct: 291 ctctccgccgcctccgccg 309



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>dbj|AK105386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H02, full
           insert sequence
          Length = 583

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ctctccgccgcctccgccg 72
           |||||||||||||||||||
Sbjct: 295 ctctccgccgcctccgccg 313



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>dbj|AK072724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139K17, full
           insert sequence
          Length = 1488

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 53  gctctccgccgcctccgcc 71
           |||||||||||||||||||
Sbjct: 121 gctctccgccgcctccgcc 139



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     ctctccgccgcctccgccg 72
              |||||||||||||||||||
Sbjct: 854886 ctctccgccgcctccgccg 854904



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>emb|AL732616.3| Mouse DNA sequence from clone RP23-466D3 on chromosome 2, complete
             sequence
          Length = 123372

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    caaccttctccctccacgg 53
             |||||||||||||||||||
Sbjct: 12019 caaccttctccctccacgg 12001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 602,231
Number of Sequences: 3902068
Number of extensions: 602231
Number of successful extensions: 59130
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58488
Number of HSP's gapped (non-prelim): 642
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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