ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd3b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT21_ORYSA (P94029) Metallothionein-like protein type 2 36 0.041
2SOX14_DROME (P40656) Putative transcription factor SOX-14 30 3.8
3FOXL2_HUMAN (P58012) Forkhead box protein L2 28 8.6
4SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like prot... 28 8.6
5MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) 28 8.6

>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = +3

Query: 78  MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 191
           MYP M E V+TT    Q ++MGVA SKG+    EA AA
Sbjct: 25  MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -1

Query: 277 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 98
           P+P  DST             PH  PPFS + +    P P    TP  +  +  A +  P
Sbjct: 42  PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88

Query: 97  SSI 89
           +++
Sbjct: 89  AAV 91



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>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/68 (33%), Positives = 26/68 (38%)
 Frame = -1

Query: 286 PSMPSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVV 107
           P+ P P      H   H L     P   PP   AAA   G   L  A+P T A    A  
Sbjct: 281 PAAPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPG--QLSPASPATAAPPAPA-- 336

Query: 106 LTPSSIPG 83
             P+S PG
Sbjct: 337 --PTSAPG 342



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>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 283 SMPSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPL 161
           S+P   + ST H    G QVQ G   H P+S    S  GP+
Sbjct: 641 SVPGTFLQSTAHSPA-GNQVQAGKQSHIPYSQQRPSGPGPM 680



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>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)|
          Length = 76

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 81  YPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAAE 194
           YP ++E   T+  +   +V+GVA  K   P F  AAAE
Sbjct: 21  YPDLEE---TSTAAQPTVVLGVAPEKKAAPEFVEAAAE 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,595,753
Number of Sequences: 219361
Number of extensions: 811904
Number of successful extensions: 2336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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