Clone Name | basd2m03 |
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Clone Library Name | barley_pub |
>CI085_RAT (Q68FU5) Protein C9orf85 homolog| Length = 155 Score = 87.0 bits (214), Expect = 4e-17 Identities = 41/112 (36%), Positives = 67/112 (59%) Frame = +3 Query: 57 RTGPPKHQNSYAWKPNLGRKINETEPGGRFRPLSEITGVCQRCRDQIDWKRKYGKYKPIV 236 R+ P KHQN++ +K + K +T+ GVCQRC++ ++W+ KY KYKP+ Sbjct: 10 RSRPQKHQNTFTFKNDKFDKSVQTKKINA----KLHDGVCQRCKEVLEWRVKYSKYKPLS 65 Query: 237 EPAKCQKCSKRNVRQAYHNVCTGCSKELGICAKCCTSVKQLVGRDAEEEDSE 392 +P KC KC ++ V+ +YH +C C+ +L +CAKC + ++ + E E SE Sbjct: 66 KPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVIPFNKEPEPSE 117
>CI085_HUMAN (Q96MD7) Protein C9orf85| Length = 179 Score = 85.9 bits (211), Expect = 8e-17 Identities = 38/94 (40%), Positives = 60/94 (63%) Frame = +3 Query: 57 RTGPPKHQNSYAWKPNLGRKINETEPGGRFRPLSEITGVCQRCRDQIDWKRKYGKYKPIV 236 R+ P KHQN++++K + K +T+ GVCQRC++ ++W+ KY KYKP+ Sbjct: 10 RSRPQKHQNTFSFKNDKFDKSVQTKKINA----KLHDGVCQRCKEVLEWRVKYSKYKPLS 65 Query: 237 EPAKCQKCSKRNVRQAYHNVCTGCSKELGICAKC 338 +P KC KC ++ V+ +YH +C C+ EL +CAKC Sbjct: 66 KPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKC 99
>CI085_MOUSE (Q9CQ90) Protein C9orf85 homolog| Length = 155 Score = 85.5 bits (210), Expect = 1e-16 Identities = 38/94 (40%), Positives = 59/94 (62%) Frame = +3 Query: 57 RTGPPKHQNSYAWKPNLGRKINETEPGGRFRPLSEITGVCQRCRDQIDWKRKYGKYKPIV 236 R+ P KHQN++ +K + K +T+ GVCQRC++ ++W+ KY KYKP+ Sbjct: 10 RSRPQKHQNTFTFKNDKFDKSVQTKKINA----KLHDGVCQRCKEVLEWRVKYSKYKPLS 65 Query: 237 EPAKCQKCSKRNVRQAYHNVCTGCSKELGICAKC 338 +P KC KC ++ V+ +YH +C C+ EL +CAKC Sbjct: 66 KPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKC 99
>HEMO_PIG (P50828) Hemopexin precursor (Hyaluronidase) (EC 3.2.1.35)| Length = 459 Score = 32.7 bits (73), Expect = 0.83 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -2 Query: 253 WHFAGSTIGLYLPYLRFQ--SIWSRQRWQTPVISDRGRNLPPGSVSLIFR 110 W F ST+ + L F+ S+W+ Q W +IS+R +N P SV FR Sbjct: 56 WGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISERWKN-APSSVDAAFR 104
>CWC24_KLULA (Q6CSS6) Pre-mRNA-splicing factor CWC24| Length = 229 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = +3 Query: 93 WKPNLGRKINETEPGGRFRPLSEITGVCQRCRDQIDWKRKYGKYKPIVEPAK---CQKCS 263 WK N K++ET+ + L EI C C K++Y P+V C C Sbjct: 144 WKLNTDWKVDETQEKEVLKELEEIPFRCFLC------KKEY--TSPVVTKCNHYFCSSCF 195 Query: 264 KRNVRQAYHNVCTGCSKELGICAKCCTSVKQLV 362 + ++ + + C C KE AK T +++L+ Sbjct: 196 MKQMKVSTN--CPICGKETEGAAKMATKLRKLL 226
>LIP_STAEQ (Q5HKP6) Lipase precursor (EC 3.1.1.3) (Glycerol ester hydrolase)| Length = 688 Score = 30.8 bits (68), Expect = 3.2 Identities = 23/118 (19%), Positives = 48/118 (40%) Frame = +3 Query: 171 VCQRCRDQIDWKRKYGKYKPIVEPAKCQKCSKRNVRQAYHNVCTGCSKELGICAKCCTSV 350 V ++ ++ + +K+ + KP E + +K + N Q H+ ++++ T Sbjct: 112 VVEQNKENEAFVKKHSEEKPQQEQVELEKHASEN-NQTLHSKAAQSNEDVK------TKP 164 Query: 351 KQLVGRDAEEEDSERKXXXXXXXXXXXXXXXXXXXXMNKNKDEESGPSVPKIADRDRE 524 QL A++EDS+++ N++KD +S V K D + Sbjct: 165 SQLDNTTAQQEDSQKENLSKQDTQSSKTTDLLRATGQNQSKDSQSTEEVNKEVKNDTQ 222
>ETV3_MOUSE (Q8R4Z4) ETS translocation variant 3 (ETS-domain transcriptional| repressor PE1) (PE-1) (Mitogenic Ets transcriptional suppressor) Length = 513 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Frame = +2 Query: 50 VEANWSPEAPEQLRMEAQPRP---------EDQRDRTRGQVPASVGDHRRLPALPGPNRL 202 ++ PE P Q ++ QP P E + + RG VPAS R+ P + Sbjct: 330 LQCQMHPEEPSQFSIKLQPPPAGRKNRERVESREEAVRGSVPASAPVPSRIKVEPATEKD 389 Query: 203 EAQIRQ 220 +RQ Sbjct: 390 PDSLRQ 395
>TRX_DROME (P20659) Protein trithorax| Length = 3726 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 13/53 (24%) Frame = +3 Query: 246 KCQKCSKRNVRQAYHNVCTGCSKEL------GICAKC-------CTSVKQLVG 365 KCQKC K YH+ C G SK L IC C T V + VG Sbjct: 1359 KCQKCQKN-----YHSTCLGTSKRLLGADRPLICVNCLKCKSCSTTKVSKFVG 1406
>STB4_YEAST (P50104) Probable transcriptional regulatory protein STB4| Length = 949 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 141 RFRPLSEITGVCQRCRDQIDWKRKYGKYKPIVEPAKCQKCSKRNVRQAYHNVCTGCSKEL 320 RFR ++ I ++ GK + V+ A C+ C KR V+ +N C CSK Sbjct: 52 RFREMTAIGNTDDALDTSTAASKENGKGRLRVQKA-CELCKKRKVKCDGNNPCLNCSKHQ 110 Query: 321 GIC 329 C Sbjct: 111 KEC 113
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 13/53 (24%) Frame = +3 Query: 246 KCQKCSKRNVRQAYHNVCTGCSKEL------GICAKC-------CTSVKQLVG 365 KCQKC K YH+ C G SK L IC C T V + VG Sbjct: 1346 KCQKCQKN-----YHSTCLGTSKRLLGADRPLICVNCLKCKSCATTKVSKFVG 1393
>VAL2_TYLCA (P36280) AL2 protein (C2 protein)| Length = 135 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 65 SPEAPEQLRMEAQPRPEDQRDRTRGQVPASVGDHRRLPAL 184 +P+AP QL QPR D + Q S+GD + LP L Sbjct: 83 APQAPVQL----QPRHHSSPDTVQSQPEESIGDTQMLPGL 118
>CATL_BRUPA (O17473) Cathepsin L-like precursor (EC 3.4.22.15)| Length = 395 Score = 29.6 bits (65), Expect = 7.0 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +3 Query: 177 QRCRDQIDWKRKYGKYKPIVEPAKCQKC---SKRNVRQAYHNVCTG 305 +R DQ+DW+ K G P+ +C C + +AYH TG Sbjct: 180 ERLPDQVDWRTK-GAVTPVRNQGECGSCYAFATAAALEAYHKQMTG 224
>REC8L_HUMAN (O95072) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)| Length = 547 Score = 29.6 bits (65), Expect = 7.0 Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 24/114 (21%) Frame = +2 Query: 62 WSPEA-------PEQLRMEAQPRPEDQRDRTRGQVPASVGDHRRLPAL-------PGPNR 199 W P A PE+LR+ A P PE R VP RR L P + Sbjct: 264 WEPGALLMEVTPPEELRLPAPPSPE-----RRPPVPPPPRRRRRRRLLFWDKETQISPEK 318 Query: 200 LEAQIRQVQADCRACKMPEVQ*TKRPAGVPQRLYRL----------LQGAWDLC 331 + Q+ Q +A C C P VQ +R P L+R L G W C Sbjct: 319 FQEQL-QTRAHCWEC--PMVQPPERTIRGPAELFRTPTLSGWLPPELLGLWTHC 369
>AT2B4_HUMAN (P23634) Plasma membrane calcium-transporting ATPase 4 (EC 3.6.3.8)| (PMCA4) (Plasma membrane calcium pump isoform 4) (Plasma membrane calcium ATPase isoform 4) Length = 1241 Score = 29.6 bits (65), Expect = 7.0 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = +2 Query: 83 QLRMEAQPRPEDQRDRTRGQVPASVGDHRRLPALPG 190 +LR+ A+ P D+ +G + ++VG+HR++ A+ G Sbjct: 749 KLRVLARSSPTDKHTLVKGIIDSTVGEHRQVVAVTG 784
>CRCB1_STRR6 (Q8DPG7) Protein crcB homolog 1| Length = 109 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 479 LILIFVHKANQCPSLPLPSISDGLL*CFALTVFFLSIPSNKL 354 L+ F + NQ LPL ++ LL CF + VF+ + S ++ Sbjct: 15 LVRYFFSRYNQASKLPLGTLIANLLGCFLIGVFYNHVESKEV 56
>CRCB1_STRPN (Q97QC5) Protein crcB homolog 1| Length = 109 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 479 LILIFVHKANQCPSLPLPSISDGLL*CFALTVFFLSIPSNKL 354 L+ F + NQ LPL ++ LL CF + VF+ + S ++ Sbjct: 15 LVRYFFSRYNQASKLPLGTLIANLLGCFLIGVFYNHVESKEV 56
>CNG19_ARATH (Q9LDR2) Putative cyclic nucleotide-gated ion channel 19 (Cyclic| nucleotide-binding transporter 2) Length = 729 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = -2 Query: 583 PFCTACSAYSSRDA----TGKRSPSRSRSAIFG 497 P+CT C +Y +R A T + S SR R+ ++G Sbjct: 106 PYCTTCPSYYNRQAAQLHTSRVSASRFRTVLYG 138
>SLT11_YARLI (Q6C3L4) Pre-mRNA-splicing factor SLT11| Length = 356 Score = 29.3 bits (64), Expect = 9.2 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 13/74 (17%) Frame = +3 Query: 156 SEITGVCQRCRDQIDW----KRKYGKY-----KPIV----EPAKCQKCSKRNVRQAYHNV 296 +E+ VC +C + K KYG +P +P + QK S R + NV Sbjct: 16 TEVPAVCTQCLGANPYIRMTKEKYGAECKMCTRPFTVFRWQPERAQKGSSRG-KPLKTNV 74 Query: 297 CTGCSKELGICAKC 338 C CS++ C C Sbjct: 75 CLTCSRQKNCCQSC 88
>ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar autoantigen 36| homolog) Length = 315 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 228 PIVEPAKCQKCSKRNVRQAYHNVCTGCSKELGICAKC 338 P P +C KC K+ +A+ C + L ICA+C Sbjct: 33 PCNAPMECDKCEKKQKSRAFCYFCQSIQR-LPICAQC 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,289,693 Number of Sequences: 219361 Number of extensions: 1880238 Number of successful extensions: 6412 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6021 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6405 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)