ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 383 e-103
2ref|NM_191345.1| Oryza sativa (japonica cultivar-group), predic... 361 2e-96
3gb|AY110066.1| Zea mays CL46173_1 mRNA sequence 230 4e-57
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, comp... 46 0.13
7gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, comp... 46 0.13
8gb|AE009253.1| Agrobacterium tumefaciens str. C58 linear chromos... 44 0.52
9gb|AE008359.1| Agrobacterium tumefaciens str. C58 linear chromos... 44 0.52
10gb|CP000133.1| Rhizobium etli CFN 42, complete genome 44 0.52
11ref|XM_472230.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
12gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 42 2.1
13emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
14gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 42 2.1
15gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 2.1
16gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 2.1
17emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 ... 42 2.1
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
20dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AK103261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
23dbj|AK069457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
24gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 42 2.1
25ref|NM_106741.2| Arabidopsis thaliana RNA binding AT1G80930 mRNA... 40 8.2
26ref|NM_111089.2| Arabidopsis thaliana unknown protein AT3G02220 ... 40 8.2
27gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
28gb|BC077266.1| Xenopus laevis MGC80014 protein, mRNA (cDNA clone... 40 8.2
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.2
30ref|XM_542744.2| PREDICTED: Canis familiaris similar to chemokin... 40 8.2
31gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC... 40 8.2
32gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome... 40 8.2
33emb|AL121946.20|HSDJ357H1 Human DNA sequence from clone RP3-357H... 40 8.2
34gb|AF507019.1| Caenorhabditis remanei putative protein phosphata... 40 8.2
35gb|AY139757.1| Arabidopsis thaliana At1g80930/F23A5_23 mRNA, com... 40 8.2
36gb|AY129465.1| Homo sapiens polycystic kidney and hepatic diseas... 40 8.2
37gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
38dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 8.2
39gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 8.2
40emb|CR523550.1| Gallus gallus finished cDNA, clone ChEST859j20 40 8.2
41emb|BX649415.10| Zebrafish DNA sequence from clone RP71-84D9 in ... 40 8.2
42gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complet... 40 8.2
43emb|CR386561.1| Gallus gallus finished cDNA, clone ChEST900n1 40 8.2
44dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
46gb|BT005247.1| Arabidopsis thaliana At3g02220 mRNA, complete cds 40 8.2
47gb|BT004547.1| Arabidopsis thaliana At1g80930/F23A5_23 gene, com... 40 8.2
48gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, com... 40 8.2
49gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.2
50emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in l... 40 8.2
51dbj|AK119049.1| Arabidopsis thaliana At3g02220 mRNA for unknown ... 40 8.2
52ref|XM_310263.2| Anopheles gambiae str. PEST ENSANGP00000015213 ... 40 8.2
53gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 ... 40 8.2
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
55gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome... 40 8.2
56emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on ch... 40 8.2
57emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chr... 40 8.2

>dbj|AK099449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022F08, full
           insert sequence
          Length = 829

 Score =  383 bits (193), Expect = e-103
 Identities = 431/507 (85%), Gaps = 5/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 63  ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122
           |||||||||||||| |||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 136 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 195

                                                                       
Query: 123 gagaccgaacccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgc 182
           |||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 196 gagaccgagcccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgc 255

                                                                       
Query: 183 tgccgggaccaaatcgactggaagcgcaaatacggcaagtacaagccgattgtcgagcct 242
           |||  ||||||||||||||||||| | | |||||| ||||||||||| || || ||||| 
Sbjct: 256 tgcaaggaccaaatcgactggaagagaagatacgggaagtacaagcctatcgttgagccg 315

                                                                       
Query: 243 gcaaaatgccagaagtgcagtaaacgaaacgtccggcaggcgtaccacaacgtctgtaca 302
           |||||||| ||||||||  | ||||| |||||||| |||||||| ||||||||||| || 
Sbjct: 316 gcaaaatgtcagaagtgtgggaaacggaacgtccgacaggcgtatcacaacgtctgcacg 375

                                                                       
Query: 303 ggttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaagcagcttgtt 362
           | |||||||||||| ||||||||||| || ||||||||||| | ||||||   |||||| 
Sbjct: 376 gcttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaaagcgcttgtc 435

                                                                       
Query: 363 ggaagggatgctgag-gaagaagacagtgagcgcaaagcactagaggaggccatcagata 421
           ||||||||| || || ||| | || ||||||||||| | ||||||||||||||| |||  
Sbjct: 436 ggaagggat-cttagtgaacaggagagtgagcgcaaggaactagaggaggccataagagg 494

                                                                       
Query: 422 tgctagggagagggagcgaaggacactgattcgccttatgaacaaaaataaggatgagga 481
           |||||||||||||||| |  | |||||  |||||||||||||||||  |   |  | |||
Sbjct: 495 tgctagggagagggagaggcgcacacttcttcgccttatgaacaaaggt---ggcgggga 551

                                                                       
Query: 482 gagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccctgt 541
           |||||| || || ||||||||||| || ||| ||  ||| ||||| ||| ||||||||| 
Sbjct: 552 gagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccctgc 611

                                      
Query: 542 tgcatctcttgacgaatatgctgaaca 568
           |||||| ||||||||||||||||||||
Sbjct: 612 tgcatcccttgacgaatatgctgaaca 638



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>ref|NM_191345.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score =  361 bits (182), Expect = 2e-96
 Identities = 417/492 (84%), Gaps = 5/492 (1%)
 Strand = Plus / Plus

                                                                       
Query: 78  cagaacagctacgcatggaagcccaacctcggccggaagatcaacgagaccgaacccggg 137
           |||||| ||||||| ||||||||||||||||| | |||||||||||||||||| ||||| 
Sbjct: 238 cagaaccgctacgcgtggaagcccaacctcgggcagaagatcaacgagaccgagcccggc 297

                                                                       
Query: 138 ggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggaccaaatc 197
           ||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 298 ggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggaccaaatc 357

                                                                       
Query: 198 gactggaagcgcaaatacggcaagtacaagccgattgtcgagcctgcaaaatgccagaag 257
           ||||||||| | | |||||| ||||||||||| || || ||||| |||||||| ||||||
Sbjct: 358 gactggaagagaagatacgggaagtacaagcctatcgttgagccggcaaaatgtcagaag 417

                                                                       
Query: 258 tgcagtaaacgaaacgtccggcaggcgtaccacaacgtctgtacaggttgctccaaggag 317
           ||  | ||||| |||||||| |||||||| ||||||||||| || | |||||||||||| 
Sbjct: 418 tgtgggaaacggaacgtccgacaggcgtatcacaacgtctgcacggcttgctccaaggac 477

                                                                       
Query: 318 cttgggatttgtgccaagtgctgcacctctgttaagcagcttgttggaagggatgctgag 377
           ||||||||||| || ||||||||||| | ||||||   |||||| ||||||||| || ||
Sbjct: 478 cttgggatttgcgcgaagtgctgcacttgtgttaaagcgcttgtcggaagggat-cttag 536

                                                                       
Query: 378 -gaagaagacagtgagcgcaaagcactagaggaggccatcagatatgctagggagaggga 436
            ||| | || ||||||||||| | ||||||||||||||| |||  |||||||||||||||
Sbjct: 537 tgaacaggagagtgagcgcaaggaactagaggaggccataagaggtgctagggagaggga 596

                                                                       
Query: 437 gcgaaggacactgattcgccttatgaacaaaaataaggatgaggagagcgggccatcagt 496
           | |  | |||||  |||||||||||||||||  |   |  | ||||||||| || || ||
Sbjct: 597 gaggcgcacacttcttcgccttatgaacaaaggt---ggcggggagagcggaccgtcggt 653

                                                                       
Query: 497 tccaaagatcgcggaccgagatcgggaaggcgaccttttccctgttgcatctcttgacga 556
           ||||||||| || ||| ||  ||| ||||| ||| ||||||||| |||||| ||||||||
Sbjct: 654 tccaaagattgctgacagaagtcgtgaaggggacattttccctgctgcatcccttgacga 713

                       
Query: 557 atatgctgaaca 568
           ||||||||||||
Sbjct: 714 atatgctgaaca 725



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>gb|AY110066.1| Zea mays CL46173_1 mRNA sequence
          Length = 629

 Score =  230 bits (116), Expect = 4e-57
 Identities = 274/327 (83%)
 Strand = Plus / Minus

                                                                       
Query: 141 aggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggaccaaatcgac 200
           |||||||| |||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 629 aggttccgacctctgtcagaaatcnccggcgtctgccagcgctgccgggatcaaatcgac 570

                                                                       
Query: 201 tggaagcgcaaatacggcaagtacaagccgattgtcgagcctgcaaaatgccagaagtgc 260
           ||||| |||| |||||| || |||||||| ||||| ||||| ||||||||||||||||| 
Sbjct: 569 tggaaacgcagatacggaaaatacaagcccattgttgagccagcaaaatgccagaagtgt 510

                                                                       
Query: 261 agtaaacgaaacgtccggcaggcgtaccacaacgtctgtacaggttgctccaaggagctt 320
           | ||| |||||||||||||| || ||||| ||||| || | || |||||||||||| || 
Sbjct: 509 aataagcgaaacgtccggcaagcataccataacgtatgcagagattgctccaaggacctc 450

                                                                       
Query: 321 gggatttgtgccaagtgctgcacctctgttaagcagcttgttggaagggatgctgaggaa 380
           || || ||||| ||||||||||| | ||||||  ||||||| |||||||||||  | || 
Sbjct: 449 ggcatatgtgctaagtgctgcacatgtgttaacgagcttgtcggaagggatgcgaatgag 390

                                                                       
Query: 381 gaagacagtgagcgcaaagcactagaggaggccatcagatatgctagggagagggagcga 440
           || || ||||| |||||  ||||||| |||||  |||||  ||||||||||||||| |||
Sbjct: 389 gaggaaagtgaacgcaagtcactagaagaggctgtcagaggtgctagggagagggaacga 330

                                      
Query: 441 aggacactgattcgccttatgaacaaa 467
            | |||||  ||||  |||||||||||
Sbjct: 329 cgtacacttcttcgtattatgaacaaa 303



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Minus

                                                                            
Query: 132      cccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggac 191
                ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||
Sbjct: 32087110 cccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggac 32087051

                               
Query: 192      caaatcgactggaag 206
                |||||||||||||||
Sbjct: 32087050 caaatcgactggaag 32087036



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                            
Query: 63       ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122
                |||||||||||||| |||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 32087265 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 32087206

                       
Query: 123      gagaccg 129
                |||||||
Sbjct: 32087205 gagaccg 32087199



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                            
Query: 479      ggagagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccc 538
                ||||||||| || || ||||||||||| || ||| ||  ||| ||||| ||| |||||||
Sbjct: 32085257 ggagagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccc 32085198

                                              
Query: 539      tgttgcatctcttgacgaatatgctgaaca 568
                || |||||| ||||||||||||||||||||
Sbjct: 32085197 tgctgcatcccttgacgaatatgctgaaca 32085168



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 305      ttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaa 352
                |||||||||||| ||||||||||| || ||||||||||| | ||||||
Sbjct: 32086650 ttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaa 32086603



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 264      aaacgaaacgtccggcaggcgtaccacaacgtctg 298
                ||||| |||||||| |||||||| |||||||||||
Sbjct: 32086779 aaacggaacgtccgacaggcgtatcacaacgtctg 32086745



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 24       cggcggcggcgcgaggcggag 44
                |||||||||||||||||||||
Sbjct: 15829754 cggcggcggcgcgaggcggag 15829774



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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0512C01
          Length = 176261

 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Minus

                                                                          
Query: 132    cccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggac 191
              ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||
Sbjct: 128924 cccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggac 128865

                             
Query: 192    caaatcgactggaag 206
              |||||||||||||||
Sbjct: 128864 caaatcgactggaag 128850



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                          
Query: 63     ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122
              |||||||||||||| |||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 129079 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 129020

                     
Query: 123    gagaccg 129
              |||||||
Sbjct: 129019 gagaccg 129013



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                          
Query: 479    ggagagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccc 538
              ||||||||| || || ||||||||||| || ||| ||  ||| ||||| ||| |||||||
Sbjct: 127071 ggagagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccc 127012

                                            
Query: 539    tgttgcatctcttgacgaatatgctgaaca 568
              || |||||| ||||||||||||||||||||
Sbjct: 127011 tgctgcatcccttgacgaatatgctgaaca 126982



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 305    ttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaa 352
              |||||||||||| ||||||||||| || ||||||||||| | ||||||
Sbjct: 128464 ttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaa 128417



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 264    aaacgaaacgtccggcaggcgtaccacaacgtctg 298
              ||||| |||||||| |||||||| |||||||||||
Sbjct: 128593 aaacggaacgtccgacaggcgtatcacaacgtctg 128559



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>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence
          Length = 197019

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 305  ttgctccaaggagcttgggattt 327
            |||||||||||||||||||||||
Sbjct: 5076 ttgctccaaggagcttgggattt 5054



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>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence
          Length = 203773

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 305   ttgctccaaggagcttgggattt 327
             |||||||||||||||||||||||
Sbjct: 78118 ttgctccaaggagcttgggattt 78096



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>gb|AE009253.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 23 of 187
             of the complete sequence
          Length = 13802

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 200   ctggaagcgcaaatacggcaag 221
             ||||||||||||||||||||||
Sbjct: 12091 ctggaagcgcaaatacggcaag 12112



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>gb|AE008359.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 163 of
            187 of the complete sequence
          Length = 12046

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 200  ctggaagcgcaaatacggcaag 221
            ||||||||||||||||||||||
Sbjct: 9142 ctggaagcgcaaatacggcaag 9121



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 200     ctggaagcgcaaatacggcaag 221
               ||||||||||||||||||||||
Sbjct: 2142191 ctggaagcgcaaatacggcaag 2142170



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>ref|XM_472230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 258

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 24  cggcggcggcgcgaggcggag 44
           |||||||||||||||||||||
Sbjct: 179 cggcggcggcgcgaggcggag 199



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>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 363    ggaagggatgctgaggaagaa 383
              |||||||||||||||||||||
Sbjct: 170197 ggaagggatgctgaggaagaa 170177



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>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03,
             complete sequence
          Length = 130910

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    cggcggcggcgcgaggcggag 44
             |||||||||||||||||||||
Sbjct: 74471 cggcggcggcgcgaggcggag 74491



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>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    ggaagggatgctgaggaagaa 383
              |||||||||||||||||||||
Sbjct: 157596 ggaagggatgctgaggaagaa 157616



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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 375    gaggaagaagacagtgagcgcaaag 399
              ||||||||||| |||||||||||||
Sbjct: 427216 gaggaagaagaaagtgagcgcaaag 427240



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 375     gaggaagaagacagtgagcgcaaag 399
               ||||||||||| |||||||||||||
Sbjct: 1832600 gaggaagaagaaagtgagcgcaaag 1832576



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>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2,
             complete sequence
          Length = 146757

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   tccaaggagcttgggatttgt 329
             |||||||||||||||||||||
Sbjct: 12211 tccaaggagcttgggatttgt 12191



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 24       cggcggcggcgcgaggcggag 44
                |||||||||||||||||||||
Sbjct: 18606605 cggcggcggcgcgaggcggag 18606625



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 24       cggcggcggcgcgaggcggag 44
                |||||||||||||||||||||
Sbjct: 15408634 cggcggcggcgcgaggcggag 15408654



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>dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1096D03
          Length = 184422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    cggcggcggcgcgaggcggag 44
             |||||||||||||||||||||
Sbjct: 57423 cggcggcggcgcgaggcggag 57443



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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1299_A11
          Length = 160099

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    cggcggcggcgcgaggcggag 44
             |||||||||||||||||||||
Sbjct: 57926 cggcggcggcgcgaggcggag 57946



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>dbj|AK103261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124D08, full
           insert sequence
          Length = 2161

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 24  cggcggcggcgcgaggcggag 44
           |||||||||||||||||||||
Sbjct: 243 cggcggcggcgcgaggcggag 223



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>dbj|AK069457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019M11, full
           insert sequence
          Length = 1508

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 24  cggcggcggcgcgaggcggag 44
           |||||||||||||||||||||
Sbjct: 244 cggcggcggcgcgaggcggag 224



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>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   ggaagggatgctgaggaagaa 383
             |||||||||||||||||||||
Sbjct: 56710 ggaagggatgctgaggaagaa 56730



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>ref|NM_106741.2| Arabidopsis thaliana RNA binding AT1G80930 mRNA, complete cds
          Length = 3256

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  gatgagtctgatgaagaaga 602
            ||||||||||||||||||||
Sbjct: 2090 gatgagtctgatgaagaaga 2109



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>ref|NM_111089.2| Arabidopsis thaliana unknown protein AT3G02220 mRNA, complete cds
          Length = 879

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226
           |||| |||||| |||||||||||||| |||||
Sbjct: 216 atcgcctggaaacgcaaatacggcaaatacaa 247



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>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02,
              complete sequence
          Length = 148265

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     cggcggcggcgcgaggcgga 43
              ||||||||||||||||||||
Sbjct: 115826 cggcggcggcgcgaggcgga 115807



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>gb|BC077266.1| Xenopus laevis MGC80014 protein, mRNA (cDNA clone MGC:80014
           IMAGE:3398932), complete cds
          Length = 3176

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 gtctgccagcgctgccggga 190
           ||||||||||||||||||||
Sbjct: 236 gtctgccagcgctgccggga 255



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 23       ccggcggcggcgcgaggcggagnagat 49
                |||||| ||||||||||||||| ||||
Sbjct: 12360090 ccggcgacggcgcgaggcggaggagat 12360064



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>ref|XM_542744.2| PREDICTED: Canis familiaris similar to chemokine-like factor
           superfamily 8 (LOC485625), mRNA
          Length = 529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 369 gatgctgaggaagaagacagtgag 392
           |||| |||||||||||||||||||
Sbjct: 270 gatgatgaggaagaagacagtgag 247



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>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence,
             complete sequence
          Length = 94369

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 195   atcgactggaagcgcaaatacggcaagtacaa 226
             |||| |||||| |||||||||||||| |||||
Sbjct: 61582 atcgcctggaaacgcaaatacggcaaatacaa 61613



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>gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome 10, complete
            sequence
          Length = 166393

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 574  tacagaagggatgagtctga 593
            ||||||||||||||||||||
Sbjct: 9303 tacagaagggatgagtctga 9322



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>emb|AL121946.20|HSDJ357H1 Human DNA sequence from clone RP3-357H1 on chromosome 6p12.1-12.3
              Contains part of the PKHD1 gene for polycystic kidney and
              hepatic disease 1 (autosomal recessive) (TIG multiple
              domains-1, FCYT, ARPKD) and a CpG island, complete sequence
          Length = 138961

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    ggatgctgaggaagaagaca 387
              ||||||||||||||||||||
Sbjct: 126640 ggatgctgaggaagaagaca 126621



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>gb|AF507019.1| Caenorhabditis remanei putative protein phosphatase FEM-2 (fem-2)
            mRNA, complete cds
          Length = 1796

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  gatgagtctgatgaagaaga 602
            ||||||||||||||||||||
Sbjct: 1426 gatgagtctgatgaagaaga 1445



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>gb|AY139757.1| Arabidopsis thaliana At1g80930/F23A5_23 mRNA, complete cds
          Length = 3057

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  gatgagtctgatgaagaaga 602
            ||||||||||||||||||||
Sbjct: 2052 gatgagtctgatgaagaaga 2071



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>gb|AY129465.1| Homo sapiens polycystic kidney and hepatic disease 1 (PKHD1) gene,
              complete cds, alternatively spliced
          Length = 469514

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    ggatgctgaggaagaagaca 387
              ||||||||||||||||||||
Sbjct: 123205 ggatgctgaggaagaagaca 123224



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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 23    ccggcggcggcgcgaggcggagnagat 49
             |||||| ||||||||||||||| ||||
Sbjct: 19108 ccggcgacggcgcgaggcggaggagat 19082



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     acctcggccggaagatcaac 122
               ||||||||||||||||||||
Sbjct: 4069530 acctcggccggaagatcaac 4069549



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 145     tccggcctctgtcggagatcaccggcgt 172
               |||||| ||||||| |||||||||||||
Sbjct: 1550703 tccggcatctgtcgcagatcaccggcgt 1550730



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>emb|CR523550.1| Gallus gallus finished cDNA, clone ChEST859j20
          Length = 1409

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 530 ccttttccctgttgcatctcttga 553
           ||||| ||||||||||||||||||
Sbjct: 861 cctttgccctgttgcatctcttga 884



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>emb|BX649415.10| Zebrafish DNA sequence from clone RP71-84D9 in linkage group 17,
            complete sequence
          Length = 119427

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  tgcaaaatgccagaagtgca 261
            ||||||||||||||||||||
Sbjct: 2784 tgcaaaatgccagaagtgca 2765



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>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence
          Length = 176629

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ccaaggagcttgggatttgt 329
              ||||||||||||||||||||
Sbjct: 100486 ccaaggagcttgggatttgt 100467



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>emb|CR386561.1| Gallus gallus finished cDNA, clone ChEST900n1
          Length = 1028

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 530 ccttttccctgttgcatctcttga 553
           ||||| ||||||||||||||||||
Sbjct: 608 cctttgccctgttgcatctcttga 631



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       cggcggcggcgcgaggcgga 43
                ||||||||||||||||||||
Sbjct: 11779058 cggcggcggcgcgaggcgga 11779077



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 23       ccggcggcggcgcgaggcggagnagat 49
                |||||| ||||||||||||||| ||||
Sbjct: 12356853 ccggcgacggcgcgaggcggaggagat 12356827



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>gb|BT005247.1| Arabidopsis thaliana At3g02220 mRNA, complete cds
          Length = 684

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226
           |||| |||||| |||||||||||||| |||||
Sbjct: 148 atcgcctggaaacgcaaatacggcaaatacaa 179



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>gb|BT004547.1| Arabidopsis thaliana At1g80930/F23A5_23 gene, complete cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  gatgagtctgatgaagaaga 602
            ||||||||||||||||||||
Sbjct: 1879 gatgagtctgatgaagaaga 1898



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>gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, complete sequence
          Length = 167578

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   cagcttgttggaagggatgc 373
             ||||||||||||||||||||
Sbjct: 47233 cagcttgttggaagggatgc 47214



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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 23     ccggcggcggcgcgaggcggagnagat 49
              |||||| ||||||||||||||| ||||
Sbjct: 129623 ccggcgacggcgcgaggcggaggagat 129597



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>emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in linkage group 17, complete
              sequence
          Length = 205011

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    tgcaaaatgccagaagtgca 261
              ||||||||||||||||||||
Sbjct: 137688 tgcaaaatgccagaagtgca 137669



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>dbj|AK119049.1| Arabidopsis thaliana At3g02220 mRNA for unknown protein, complete
           cds, clone: RAFL21-38-C15
          Length = 835

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226
           |||| |||||| |||||||||||||| |||||
Sbjct: 172 atcgcctggaaacgcaaatacggcaaatacaa 203



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>ref|XM_310263.2| Anopheles gambiae str. PEST ENSANGP00000015213
           (ENSANGG00000012724), partial mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226
           ||||||||||||  ||||||| ||||||||||
Sbjct: 157 atcgactggaagatcaaataccgcaagtacaa 188



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>gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence
          Length = 109694

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   gatgagtctgatgaagaaga 602
             ||||||||||||||||||||
Sbjct: 90959 gatgagtctgatgaagaaga 90940



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       cggcggcggcgcgaggcgga 43
                ||||||||||||||||||||
Sbjct: 11857469 cggcggcggcgcgaggcgga 11857488



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>gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome 10, complete sequence
          Length = 163869

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    tacagaagggatgagtctga 593
              ||||||||||||||||||||
Sbjct: 124728 tacagaagggatgagtctga 124747



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>emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on chromosome 11, complete
              sequence
          Length = 144136

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    tggaagggatgctgaggaag 381
              ||||||||||||||||||||
Sbjct: 133918 tggaagggatgctgaggaag 133937



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>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete
             sequence
          Length = 110275

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   tggaagggatgctgaggaag 381
             ||||||||||||||||||||
Sbjct: 93658 tggaagggatgctgaggaag 93677


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,719,837
Number of Sequences: 3902068
Number of extensions: 4719837
Number of successful extensions: 85393
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84764
Number of HSP's gapped (non-prelim): 629
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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