ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2m03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022F08, full insert sequence Length = 829 Score = 383 bits (193), Expect = e-103 Identities = 431/507 (85%), Gaps = 5/507 (0%) Strand = Plus / Plus Query: 63 ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122 |||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| Sbjct: 136 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 195 Query: 123 gagaccgaacccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgc 182 |||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 196 gagaccgagcccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgc 255 Query: 183 tgccgggaccaaatcgactggaagcgcaaatacggcaagtacaagccgattgtcgagcct 242 ||| ||||||||||||||||||| | | |||||| ||||||||||| || || ||||| Sbjct: 256 tgcaaggaccaaatcgactggaagagaagatacgggaagtacaagcctatcgttgagccg 315 Query: 243 gcaaaatgccagaagtgcagtaaacgaaacgtccggcaggcgtaccacaacgtctgtaca 302 |||||||| |||||||| | ||||| |||||||| |||||||| ||||||||||| || Sbjct: 316 gcaaaatgtcagaagtgtgggaaacggaacgtccgacaggcgtatcacaacgtctgcacg 375 Query: 303 ggttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaagcagcttgtt 362 | |||||||||||| ||||||||||| || ||||||||||| | |||||| |||||| Sbjct: 376 gcttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaaagcgcttgtc 435 Query: 363 ggaagggatgctgag-gaagaagacagtgagcgcaaagcactagaggaggccatcagata 421 ||||||||| || || ||| | || ||||||||||| | ||||||||||||||| ||| Sbjct: 436 ggaagggat-cttagtgaacaggagagtgagcgcaaggaactagaggaggccataagagg 494 Query: 422 tgctagggagagggagcgaaggacactgattcgccttatgaacaaaaataaggatgagga 481 |||||||||||||||| | | ||||| ||||||||||||||||| | | | ||| Sbjct: 495 tgctagggagagggagaggcgcacacttcttcgccttatgaacaaaggt---ggcgggga 551 Query: 482 gagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccctgt 541 |||||| || || ||||||||||| || ||| || ||| ||||| ||| ||||||||| Sbjct: 552 gagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccctgc 611 Query: 542 tgcatctcttgacgaatatgctgaaca 568 |||||| |||||||||||||||||||| Sbjct: 612 tgcatcccttgacgaatatgctgaaca 638
>ref|NM_191345.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 361 bits (182), Expect = 2e-96 Identities = 417/492 (84%), Gaps = 5/492 (1%) Strand = Plus / Plus Query: 78 cagaacagctacgcatggaagcccaacctcggccggaagatcaacgagaccgaacccggg 137 |||||| ||||||| ||||||||||||||||| | |||||||||||||||||| ||||| Sbjct: 238 cagaaccgctacgcgtggaagcccaacctcgggcagaagatcaacgagaccgagcccggc 297 Query: 138 ggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggaccaaatc 197 ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 298 ggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggaccaaatc 357 Query: 198 gactggaagcgcaaatacggcaagtacaagccgattgtcgagcctgcaaaatgccagaag 257 ||||||||| | | |||||| ||||||||||| || || ||||| |||||||| |||||| Sbjct: 358 gactggaagagaagatacgggaagtacaagcctatcgttgagccggcaaaatgtcagaag 417 Query: 258 tgcagtaaacgaaacgtccggcaggcgtaccacaacgtctgtacaggttgctccaaggag 317 || | ||||| |||||||| |||||||| ||||||||||| || | |||||||||||| Sbjct: 418 tgtgggaaacggaacgtccgacaggcgtatcacaacgtctgcacggcttgctccaaggac 477 Query: 318 cttgggatttgtgccaagtgctgcacctctgttaagcagcttgttggaagggatgctgag 377 ||||||||||| || ||||||||||| | |||||| |||||| ||||||||| || || Sbjct: 478 cttgggatttgcgcgaagtgctgcacttgtgttaaagcgcttgtcggaagggat-cttag 536 Query: 378 -gaagaagacagtgagcgcaaagcactagaggaggccatcagatatgctagggagaggga 436 ||| | || ||||||||||| | ||||||||||||||| ||| ||||||||||||||| Sbjct: 537 tgaacaggagagtgagcgcaaggaactagaggaggccataagaggtgctagggagaggga 596 Query: 437 gcgaaggacactgattcgccttatgaacaaaaataaggatgaggagagcgggccatcagt 496 | | | ||||| ||||||||||||||||| | | | ||||||||| || || || Sbjct: 597 gaggcgcacacttcttcgccttatgaacaaaggt---ggcggggagagcggaccgtcggt 653 Query: 497 tccaaagatcgcggaccgagatcgggaaggcgaccttttccctgttgcatctcttgacga 556 ||||||||| || ||| || ||| ||||| ||| ||||||||| |||||| |||||||| Sbjct: 654 tccaaagattgctgacagaagtcgtgaaggggacattttccctgctgcatcccttgacga 713 Query: 557 atatgctgaaca 568 |||||||||||| Sbjct: 714 atatgctgaaca 725
>gb|AY110066.1| Zea mays CL46173_1 mRNA sequence Length = 629 Score = 230 bits (116), Expect = 4e-57 Identities = 274/327 (83%) Strand = Plus / Minus Query: 141 aggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggaccaaatcgac 200 |||||||| |||||||| || ||| ||||||||||||||||||||||||| ||||||||| Sbjct: 629 aggttccgacctctgtcagaaatcnccggcgtctgccagcgctgccgggatcaaatcgac 570 Query: 201 tggaagcgcaaatacggcaagtacaagccgattgtcgagcctgcaaaatgccagaagtgc 260 ||||| |||| |||||| || |||||||| ||||| ||||| ||||||||||||||||| Sbjct: 569 tggaaacgcagatacggaaaatacaagcccattgttgagccagcaaaatgccagaagtgt 510 Query: 261 agtaaacgaaacgtccggcaggcgtaccacaacgtctgtacaggttgctccaaggagctt 320 | ||| |||||||||||||| || ||||| ||||| || | || |||||||||||| || Sbjct: 509 aataagcgaaacgtccggcaagcataccataacgtatgcagagattgctccaaggacctc 450 Query: 321 gggatttgtgccaagtgctgcacctctgttaagcagcttgttggaagggatgctgaggaa 380 || || ||||| ||||||||||| | |||||| ||||||| ||||||||||| | || Sbjct: 449 ggcatatgtgctaagtgctgcacatgtgttaacgagcttgtcggaagggatgcgaatgag 390 Query: 381 gaagacagtgagcgcaaagcactagaggaggccatcagatatgctagggagagggagcga 440 || || ||||| ||||| ||||||| ||||| ||||| ||||||||||||||| ||| Sbjct: 389 gaggaaagtgaacgcaagtcactagaagaggctgtcagaggtgctagggagagggaacga 330 Query: 441 aggacactgattcgccttatgaacaaa 467 | ||||| |||| ||||||||||| Sbjct: 329 cgtacacttcttcgtattatgaacaaa 303
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 132 cccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggac 191 ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| Sbjct: 32087110 cccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggac 32087051 Query: 192 caaatcgactggaag 206 ||||||||||||||| Sbjct: 32087050 caaatcgactggaag 32087036 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 63 ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122 |||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| Sbjct: 32087265 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 32087206 Query: 123 gagaccg 129 ||||||| Sbjct: 32087205 gagaccg 32087199 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 479 ggagagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccc 538 ||||||||| || || ||||||||||| || ||| || ||| ||||| ||| ||||||| Sbjct: 32085257 ggagagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccc 32085198 Query: 539 tgttgcatctcttgacgaatatgctgaaca 568 || |||||| |||||||||||||||||||| Sbjct: 32085197 tgctgcatcccttgacgaatatgctgaaca 32085168 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 305 ttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaa 352 |||||||||||| ||||||||||| || ||||||||||| | |||||| Sbjct: 32086650 ttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaa 32086603 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 264 aaacgaaacgtccggcaggcgtaccacaacgtctg 298 ||||| |||||||| |||||||| ||||||||||| Sbjct: 32086779 aaacggaacgtccgacaggcgtatcacaacgtctg 32086745 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 15829754 cggcggcggcgcgaggcggag 15829774
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Minus Query: 132 cccgggggcaggttccggcctctgtcggagatcaccggcgtctgccagcgctgccgggac 191 ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| Sbjct: 128924 cccggcggcaggttccgtcctttgtcggagatcaccggcgtctgccagcgctgcaaggac 128865 Query: 192 caaatcgactggaag 206 ||||||||||||||| Sbjct: 128864 caaatcgactggaag 128850 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 63 ggtcccccgaagcaccagaacagctacgcatggaagcccaacctcggccggaagatcaac 122 |||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| Sbjct: 129079 ggtcccccgaagcatcagaaccgctacgcgtggaagcccaacctcgggcagaagatcaac 129020 Query: 123 gagaccg 129 ||||||| Sbjct: 129019 gagaccg 129013 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 479 ggagagcgggccatcagttccaaagatcgcggaccgagatcgggaaggcgaccttttccc 538 ||||||||| || || ||||||||||| || ||| || ||| ||||| ||| ||||||| Sbjct: 127071 ggagagcggaccgtcggttccaaagattgctgacagaagtcgtgaaggggacattttccc 127012 Query: 539 tgttgcatctcttgacgaatatgctgaaca 568 || |||||| |||||||||||||||||||| Sbjct: 127011 tgctgcatcccttgacgaatatgctgaaca 126982 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 305 ttgctccaaggagcttgggatttgtgccaagtgctgcacctctgttaa 352 |||||||||||| ||||||||||| || ||||||||||| | |||||| Sbjct: 128464 ttgctccaaggaccttgggatttgcgcgaagtgctgcacttgtgttaa 128417 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 264 aaacgaaacgtccggcaggcgtaccacaacgtctg 298 ||||| |||||||| |||||||| ||||||||||| Sbjct: 128593 aaacggaacgtccgacaggcgtatcacaacgtctg 128559
>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence Length = 197019 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 305 ttgctccaaggagcttgggattt 327 ||||||||||||||||||||||| Sbjct: 5076 ttgctccaaggagcttgggattt 5054
>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence Length = 203773 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 305 ttgctccaaggagcttgggattt 327 ||||||||||||||||||||||| Sbjct: 78118 ttgctccaaggagcttgggattt 78096
>gb|AE009253.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 23 of 187 of the complete sequence Length = 13802 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ctggaagcgcaaatacggcaag 221 |||||||||||||||||||||| Sbjct: 12091 ctggaagcgcaaatacggcaag 12112
>gb|AE008359.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 163 of 187 of the complete sequence Length = 12046 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 ctggaagcgcaaatacggcaag 221 |||||||||||||||||||||| Sbjct: 9142 ctggaagcgcaaatacggcaag 9121
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 ctggaagcgcaaatacggcaag 221 |||||||||||||||||||||| Sbjct: 2142191 ctggaagcgcaaatacggcaag 2142170
>ref|XM_472230.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 258 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 179 cggcggcggcgcgaggcggag 199
>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence Length = 200979 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 ggaagggatgctgaggaagaa 383 ||||||||||||||||||||| Sbjct: 170197 ggaagggatgctgaggaagaa 170177
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 74471 cggcggcggcgcgaggcggag 74491
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence Length = 170969 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 ggaagggatgctgaggaagaa 383 ||||||||||||||||||||| Sbjct: 157596 ggaagggatgctgaggaagaa 157616
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 gaggaagaagacagtgagcgcaaag 399 ||||||||||| ||||||||||||| Sbjct: 427216 gaggaagaagaaagtgagcgcaaag 427240
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 375 gaggaagaagacagtgagcgcaaag 399 ||||||||||| ||||||||||||| Sbjct: 1832600 gaggaagaagaaagtgagcgcaaag 1832576
>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2, complete sequence Length = 146757 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 tccaaggagcttgggatttgt 329 ||||||||||||||||||||| Sbjct: 12211 tccaaggagcttgggatttgt 12191
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 18606605 cggcggcggcgcgaggcggag 18606625
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 15408634 cggcggcggcgcgaggcggag 15408654
>dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096D03 Length = 184422 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 57423 cggcggcggcgcgaggcggag 57443
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 57926 cggcggcggcgcgaggcggag 57946
>dbj|AK103261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124D08, full insert sequence Length = 2161 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 243 cggcggcggcgcgaggcggag 223
>dbj|AK069457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019M11, full insert sequence Length = 1508 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgcgaggcggag 44 ||||||||||||||||||||| Sbjct: 244 cggcggcggcgcgaggcggag 224
>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence Length = 87978 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 ggaagggatgctgaggaagaa 383 ||||||||||||||||||||| Sbjct: 56710 ggaagggatgctgaggaagaa 56730
>ref|NM_106741.2| Arabidopsis thaliana RNA binding AT1G80930 mRNA, complete cds Length = 3256 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 gatgagtctgatgaagaaga 602 |||||||||||||||||||| Sbjct: 2090 gatgagtctgatgaagaaga 2109
>ref|NM_111089.2| Arabidopsis thaliana unknown protein AT3G02220 mRNA, complete cds Length = 879 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226 |||| |||||| |||||||||||||| ||||| Sbjct: 216 atcgcctggaaacgcaaatacggcaaatacaa 247
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgcgaggcgga 43 |||||||||||||||||||| Sbjct: 115826 cggcggcggcgcgaggcgga 115807
>gb|BC077266.1| Xenopus laevis MGC80014 protein, mRNA (cDNA clone MGC:80014 IMAGE:3398932), complete cds Length = 3176 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gtctgccagcgctgccggga 190 |||||||||||||||||||| Sbjct: 236 gtctgccagcgctgccggga 255
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 ccggcggcggcgcgaggcggagnagat 49 |||||| ||||||||||||||| |||| Sbjct: 12360090 ccggcgacggcgcgaggcggaggagat 12360064
>ref|XM_542744.2| PREDICTED: Canis familiaris similar to chemokine-like factor superfamily 8 (LOC485625), mRNA Length = 529 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 gatgctgaggaagaagacagtgag 392 |||| ||||||||||||||||||| Sbjct: 270 gatgatgaggaagaagacagtgag 247
>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence Length = 94369 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226 |||| |||||| |||||||||||||| ||||| Sbjct: 61582 atcgcctggaaacgcaaatacggcaaatacaa 61613
>gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome 10, complete sequence Length = 166393 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 tacagaagggatgagtctga 593 |||||||||||||||||||| Sbjct: 9303 tacagaagggatgagtctga 9322
>emb|AL121946.20|HSDJ357H1 Human DNA sequence from clone RP3-357H1 on chromosome 6p12.1-12.3 Contains part of the PKHD1 gene for polycystic kidney and hepatic disease 1 (autosomal recessive) (TIG multiple domains-1, FCYT, ARPKD) and a CpG island, complete sequence Length = 138961 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ggatgctgaggaagaagaca 387 |||||||||||||||||||| Sbjct: 126640 ggatgctgaggaagaagaca 126621
>gb|AF507019.1| Caenorhabditis remanei putative protein phosphatase FEM-2 (fem-2) mRNA, complete cds Length = 1796 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 gatgagtctgatgaagaaga 602 |||||||||||||||||||| Sbjct: 1426 gatgagtctgatgaagaaga 1445
>gb|AY139757.1| Arabidopsis thaliana At1g80930/F23A5_23 mRNA, complete cds Length = 3057 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 gatgagtctgatgaagaaga 602 |||||||||||||||||||| Sbjct: 2052 gatgagtctgatgaagaaga 2071
>gb|AY129465.1| Homo sapiens polycystic kidney and hepatic disease 1 (PKHD1) gene, complete cds, alternatively spliced Length = 469514 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ggatgctgaggaagaagaca 387 |||||||||||||||||||| Sbjct: 123205 ggatgctgaggaagaagaca 123224
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 40.1 bits (20), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 ccggcggcggcgcgaggcggagnagat 49 |||||| ||||||||||||||| |||| Sbjct: 19108 ccggcgacggcgcgaggcggaggagat 19082
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 acctcggccggaagatcaac 122 |||||||||||||||||||| Sbjct: 4069530 acctcggccggaagatcaac 4069549
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tccggcctctgtcggagatcaccggcgt 172 |||||| ||||||| ||||||||||||| Sbjct: 1550703 tccggcatctgtcgcagatcaccggcgt 1550730
>emb|CR523550.1| Gallus gallus finished cDNA, clone ChEST859j20 Length = 1409 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 530 ccttttccctgttgcatctcttga 553 ||||| |||||||||||||||||| Sbjct: 861 cctttgccctgttgcatctcttga 884
>emb|BX649415.10| Zebrafish DNA sequence from clone RP71-84D9 in linkage group 17, complete sequence Length = 119427 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tgcaaaatgccagaagtgca 261 |||||||||||||||||||| Sbjct: 2784 tgcaaaatgccagaagtgca 2765
>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence Length = 176629 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ccaaggagcttgggatttgt 329 |||||||||||||||||||| Sbjct: 100486 ccaaggagcttgggatttgt 100467
>emb|CR386561.1| Gallus gallus finished cDNA, clone ChEST900n1 Length = 1028 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 530 ccttttccctgttgcatctcttga 553 ||||| |||||||||||||||||| Sbjct: 608 cctttgccctgttgcatctcttga 631
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcgga 43 |||||||||||||||||||| Sbjct: 11779058 cggcggcggcgcgaggcgga 11779077
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 ccggcggcggcgcgaggcggagnagat 49 |||||| ||||||||||||||| |||| Sbjct: 12356853 ccggcgacggcgcgaggcggaggagat 12356827
>gb|BT005247.1| Arabidopsis thaliana At3g02220 mRNA, complete cds Length = 684 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226 |||| |||||| |||||||||||||| ||||| Sbjct: 148 atcgcctggaaacgcaaatacggcaaatacaa 179
>gb|BT004547.1| Arabidopsis thaliana At1g80930/F23A5_23 gene, complete cds Length = 2703 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 gatgagtctgatgaagaaga 602 |||||||||||||||||||| Sbjct: 1879 gatgagtctgatgaagaaga 1898
>gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, complete sequence Length = 167578 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cagcttgttggaagggatgc 373 |||||||||||||||||||| Sbjct: 47233 cagcttgttggaagggatgc 47214
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 ccggcggcggcgcgaggcggagnagat 49 |||||| ||||||||||||||| |||| Sbjct: 129623 ccggcgacggcgcgaggcggaggagat 129597
>emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in linkage group 17, complete sequence Length = 205011 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tgcaaaatgccagaagtgca 261 |||||||||||||||||||| Sbjct: 137688 tgcaaaatgccagaagtgca 137669
>dbj|AK119049.1| Arabidopsis thaliana At3g02220 mRNA for unknown protein, complete cds, clone: RAFL21-38-C15 Length = 835 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226 |||| |||||| |||||||||||||| ||||| Sbjct: 172 atcgcctggaaacgcaaatacggcaaatacaa 203
>ref|XM_310263.2| Anopheles gambiae str. PEST ENSANGP00000015213 (ENSANGG00000012724), partial mRNA Length = 714 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 atcgactggaagcgcaaatacggcaagtacaa 226 |||||||||||| ||||||| |||||||||| Sbjct: 157 atcgactggaagatcaaataccgcaagtacaa 188
>gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence Length = 109694 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 583 gatgagtctgatgaagaaga 602 |||||||||||||||||||| Sbjct: 90959 gatgagtctgatgaagaaga 90940
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgcgaggcgga 43 |||||||||||||||||||| Sbjct: 11857469 cggcggcggcgcgaggcgga 11857488
>gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome 10, complete sequence Length = 163869 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 tacagaagggatgagtctga 593 |||||||||||||||||||| Sbjct: 124728 tacagaagggatgagtctga 124747
>emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on chromosome 11, complete sequence Length = 144136 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tggaagggatgctgaggaag 381 |||||||||||||||||||| Sbjct: 133918 tggaagggatgctgaggaag 133937
>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete sequence Length = 110275 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tggaagggatgctgaggaag 381 |||||||||||||||||||| Sbjct: 93658 tggaagggatgctgaggaag 93677 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,719,837 Number of Sequences: 3902068 Number of extensions: 4719837 Number of successful extensions: 85393 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84764 Number of HSP's gapped (non-prelim): 629 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
