Clone Information

BLAST Search Result

Clone Name	basd2m01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal prec...	139	2e-33
2	ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, perox...	133	1e-31
3	ACOX3_MOUSE (Q9EPL9) Acyl-coenzyme A oxidase 3, peroxisomal (EC ...	33	0.13
4	CNGA3_HUMAN (Q16281) Cyclic nucleotide-gated cation channel alph...	33	0.22
5	CNGA3_MOUSE (Q9JJZ8) Cyclic nucleotide-gated cation channel alph...	32	0.48
6	CNGA3_BOVIN (Q29441) Cyclic nucleotide-gated cation channel alph...	32	0.48
7	ACOX2_ARATH (O65201) Acyl-coenzyme A oxidase 2, peroxisomal prec...	31	0.83
8	DNAA_DESPS (Q6ARL8) Chromosomal replication initiator protein dnaA	30	1.1
9	GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061	30	1.4
10	WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family mem...	30	1.4
11	CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photor...	30	1.8
12	Y006_METJA (Q60314) Hypothetical protein MJ0006	28	4.1
13	DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)	28	4.1
14	TM16F_HUMAN (Q4KMQ2) Transmembrane protein 16F	28	5.4
15	ISPG_CHLCV (Q823I7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	5.4
16	UVRB_RHOBA (Q7UFR2) UvrABC system protein B (Protein uvrB) (Exci...	28	7.0
17	Y2793_RHIME (Q92M59) UPF0335 protein R02793	28	7.0
18	EFGL_THEMA (Q9X1Y4) Elongation factor G-like protein	28	7.0
19	CLPP1_PROMP (Q7V1W0) ATP-dependent Clp protease proteolytic subu...	28	7.0
20	GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoa...	28	7.0
21	ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)	28	7.0
22	EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa en...	28	7.0
23	ISPG_CHLAB (Q5L669) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	28	7.0
24	ESR2_ORENI (Q9YH32) Estrogen receptor beta (ER-beta)	27	9.1
25	ESRB1_CARAU (Q9W669) Estrogen receptor beta-1 (ER-beta-1)	27	9.1
26	ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta)	27	9.1
27	ESR2_PIG (Q9XSW2) Estrogen receptor beta (ER-beta)	27	9.1
28	ESR2_ONCMY (P57782) Estrogen receptor beta (ER-beta)	27	9.1
29	ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta)	27	9.1
30	MUTS_CHLTR (O84797) DNA mismatch repair protein mutS	27	9.1
31	MUTS_CHLTA (Q3KKQ0) DNA mismatch repair protein mutS	27	9.1
32	ESR2_COTJA (O93511) Estrogen receptor beta (ER-beta)	27	9.1
33	ESR2_CHICK (Q9PTU5) Estrogen receptor beta (ER-beta) (cERb)	27	9.1
34	ESR2_MICUN (P57781) Estrogen receptor beta (ER-beta)	27	9.1
35	ESR2_SHEEP (Q9TU15) Estrogen receptor beta (ER-beta)	27	9.1
36	ESR2_BOVIN (Q9XSB5) Estrogen receptor beta (ER-beta)	27	9.1
37	CEND1_HUMAN (Q8WZ64) Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GA...	27	9.1
38	ESR2_STUVU (Q9PVE2) Estrogen receptor beta (ER-beta)	27	9.1
39	ESR2_RAT (Q62986) Estrogen receptor beta (ER-beta)	27	9.1
40	ESR2_MOUSE (O08537) Estrogen receptor beta (ER-beta)	27	9.1
41	ESR2_HUMAN (Q92731) Estrogen receptor beta (ER-beta)	27	9.1
42	ESR2_CALJA (Q95171) Estrogen receptor beta (ER-beta)	27	9.1

>ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC|
           1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3)
          Length = 675

 Score =  139 bits (350), Expect = 2e-33
 Identities = 67/113 (59%), Positives = 89/113 (78%)
 Frame = +3

Query: 6   TRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLARA 185
           T+LTS  LR S+FQ ++FCLRERDLL+QFT EV++   +GESRE + +LS+Q+AEDL +A
Sbjct: 513 TQLTSSTLRCSQFQTNVFCLRERDLLEQFTSEVAQLQGRGESREFSFLLSHQLAEDLGKA 572

Query: 186 FTERTILQIFLEDEMNAPAGSLKDVLGLLRSMYVMVCIDESASFLRYGYLSRD 344
           FTE+ ILQ  L+ E   P GS+KDVLGL+RSMY ++ ++E  S LRYGYLS+D
Sbjct: 573 FTEKAILQTILDAEAKLPTGSVKDVLGLVRSMYALISLEEDPSLLRYGYLSQD 625

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>ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, peroxisomal|
           precursor (EC 1.3.3.6)
          Length = 675

 Score =  133 bits (334), Expect = 1e-31
 Identities = 64/113 (56%), Positives = 87/113 (76%)
 Frame = +3

Query: 6   TRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLARA 185
           T+LTS  LR S+FQ  +FCLRERDLL++FT EV+    +GESRE   +L++Q++EDL++A
Sbjct: 513 TQLTSSTLRCSQFQKSVFCLRERDLLERFTSEVAELQGRGESREFLFLLNHQLSEDLSKA 572

Query: 186 FTERTILQIFLEDEMNAPAGSLKDVLGLLRSMYVMVCIDESASFLRYGYLSRD 344
           FTE+ ILQ  L+ E   P GS+KDVLGL+RSMY ++ ++E  S LRYG+LSRD
Sbjct: 573 FTEKAILQTVLDAEAKLPPGSVKDVLGLVRSMYALISLEEDPSLLRYGHLSRD 625

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>ACOX3_MOUSE (Q9EPL9) Acyl-coenzyme A oxidase 3, peroxisomal (EC 1.3.3.6)|
           (Pristanoyl-CoA oxidase) (Branched-chain acyl-CoA
           oxidase) (BRCACox)
          Length = 700

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 174 LARAFTERTILQIFLED-EMNAPAGSLKDVLGLLRSMYVMVCIDE-SASFLRYGYLSRDK 347
           LA AF E T++Q F E    +  + SL+ VLG L S+Y + C+ +  A   R GY+S ++
Sbjct: 558 LALAFMELTVMQRFHEHIHSSGLSPSLRTVLGRLSSVYGLWCLSQHMALSYRGGYISGEQ 617

Query: 348 CSHREE 365
                E
Sbjct: 618 TGRAME 623

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>CNGA3_HUMAN (Q16281) Cyclic nucleotide-gated cation channel alpha 3 (CNG|
           channel alpha 3) (CNG-3) (CNG3) (Cyclic nucleotide-gated
           channel alpha 3) (Cone photoreceptor cGMP-gated channel
           alpha subunit)
          Length = 694

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 3   GTRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLAR 182
           G R T++I RS  +  DLFCL + DL++  T+      A  E   + LM    I E+LAR
Sbjct: 561 GNRRTANI-RSIGYS-DLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEELAR 618

Query: 183 A 185
           A
Sbjct: 619 A 619

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>CNGA3_MOUSE (Q9JJZ8) Cyclic nucleotide-gated cation channel alpha 3 (CNG|
           channel alpha 3) (CNG-3) (CNG3) (Cyclic nucleotide-gated
           channel alpha 3) (Cone photoreceptor cGMP-gated channel
           alpha subunit)
          Length = 631

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 30/107 (28%), Positives = 51/107 (47%)
 Frame = +3

Query: 3   GTRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLAR 182
           G R T++I RS  +  DLFCL + DL++  T+      A  E   + LM    I EDL  
Sbjct: 502 GNRRTANI-RSIGYS-DLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVA 559

Query: 183 AFTERTILQIFLEDEMNAPAGSLKDVLGLLRSMYVMVCIDESASFLR 323
           A  +   ++  +E         L+  L +L++ +  +  + SAS ++
Sbjct: 560 ARVDTRDVEEKVE--------YLESSLDILQTRFARLLAEYSASQMK 598

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>CNGA3_BOVIN (Q29441) Cyclic nucleotide-gated cation channel alpha 3 (CNG|
           channel alpha 3) (CNG-3) (CNG3) (Cyclic nucleotide-gated
           channel alpha 3) (Cone photoreceptor cGMP-gated channel
           alpha subunit)
          Length = 706

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +3

Query: 3   GTRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLAR 182
           G R T++I RS  +  DLFCL + DL++  T+      A  E   + LM    I E+LA+
Sbjct: 580 GNRRTANI-RSIGYS-DLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEELAK 637

Query: 183 A 185
           A
Sbjct: 638 A 638

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>ACOX2_ARATH (O65201) Acyl-coenzyme A oxidase 2, peroxisomal precursor (EC|
           1.3.3.6) (AOX 2) (Long-chain acyl-CoA oxidase) (AtCX2)
          Length = 692

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +3

Query: 21  DILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQ-GESREKALMLSYQIAEDLARAFTER 197
           D LR  KFQ+D F  R   LL+     + ++    G        L++ +   LA +  E 
Sbjct: 531 DHLRDPKFQLDAFRYRTSRLLQNVAARLQKHSKTLGGFGAWNRCLNHLLT--LAESHIET 588

Query: 198 TILQIFLEDEMNAPAGSLKDVLGLLRSMYVM 290
            IL  F+E   N P  S K  L L   +Y +
Sbjct: 589 VILAKFIEAVKNCPDPSAKAALKLACDLYAL 619

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>DNAA_DESPS (Q6ARL8) Chromosomal replication initiator protein dnaA|
          Length = 479

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +3

Query: 72  RDLLK-QFTDEVSRYLAQGESREKALMLSYQIAEDLARAFTERTILQI 212
           RDL+  QF  +VS    Q  SR+K++ L  QIA  L+R FTE ++ +I
Sbjct: 392 RDLISAQF--QVSVEDLQSRSRKKSISLPRQIAMYLSRKFTEESLAEI 437

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>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061|
          Length = 88

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 57  FCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLARAFTERTILQIFLEDE 227
           FC+R   LLK+   E   Y   G++  +  M         ARA  +R++ QIF++D+
Sbjct: 17  FCMRALALLKRKGVEFQEYCIDGDNEAREAM--------AARANGKRSLPQIFIDDQ 65

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>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
           (Verprolin homology domain-containing protein 3)
          Length = 502

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -2

Query: 354 DYICPATNNHISEKMQIHLCTP*HT*TSVSPIHPLKNQQEHSSRPPKIFAK 202
           DY  PAT NH      +   TP +    V P  P     EH  RPP   A+
Sbjct: 247 DYSYPATPNHSLHPQPV---TPSYAAGDVPPHGPASQAAEHEYRPPSASAR 294

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>CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photoreceptor,|
           subunit alpha (CNG channel 1) (CNG-1)
          Length = 735

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +3

Query: 3   GTRLTSDILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDLAR 182
           G R T++I RS  +  DLFCL + DL++  T+      A  E   + LM    I E+ A+
Sbjct: 603 GNRRTANI-RSIGYS-DLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEEAAK 660

Query: 183 A 185
           A
Sbjct: 661 A 661

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>Y006_METJA (Q60314) Hypothetical protein MJ0006|
          Length = 378

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 292 TITYIDLSKPNTSFKEPAGAFISSSKNICKIVRSVNALAKSSAIW 158
           T    D+  P+T + E  G FI++ K I KI ++VN    +   W
Sbjct: 302 TAEMADVVLPSTCWAEKDGTFINTDKRIQKINKAVNPPGDAMDDW 346

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>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4083

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
 Frame = +3

Query: 9    RLTSDILRSSKFQMDL-----FCLRERDLLKQFTD--------------EVSRYLAQGES 131
            R+  + + + + + DL      CLR+ DL+ +  D              EV+  L+Q  S
Sbjct: 1098 RIPQNFIHAEQIESDLVSLREICLRKEDLINKNRDAISNKLEAELLKIQEVANSLSQSWS 1157

Query: 132  REKALMLSYQIAEDLARAFT-ERTILQIFLEDEM 230
            ++K L +S Q +E L+   T E +I ++  E E+
Sbjct: 1158 KKKPLSVSIQPSEALSVLNTFEDSIAKVNTEREL 1191

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>TM16F_HUMAN (Q4KMQ2) Transmembrane protein 16F|
          Length = 910

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 261 LGLLRSMYVMVCIDESASFLRYGYLSRDKCSHREERSHDTV 383
           LG    M ++  +   A FL YGYL++D C+  +E  H  +
Sbjct: 302 LGYYTQMLLLAAVVGVACFL-YGYLNQDNCTWSKEVCHPDI 341

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>ISPG_CHLCV (Q823I7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 606

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 295 HTITYIDLSKPNTSFK-EPAGAFISSSKNICK 203
           HT TY+DL K    F  E +  F+++SK I K
Sbjct: 290 HTTTYLDLPKKENPFALENSETFVNASKKITK 321

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>UVRB_RHOBA (Q7UFR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 708

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 99  EVSRYLAQGESREKALMLSYQIAEDLARAFTERTILQIFLEDEMNA 236
           E  R  A+ + R     L+ ++AEDLA  F E+ +   +L  E+NA
Sbjct: 442 EQVRIRAERDERVLVTALTKRLAEDLATYFQEQGVKCRWLHSELNA 487

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>Y2793_RHIME (Q92M59) UPF0335 protein R02793|
          Length = 90

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 153 SYQIAEDLARAFTERTILQIFLEDEMNAPAGSLKDVLGLLRSM 281
           ++ IA D  RAF ER      LE+E    A  +KDV G  +SM
Sbjct: 4   AHGIARDQLRAFIERIER---LEEEKKTIADDIKDVYGEAKSM 43

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>EFGL_THEMA (Q9X1Y4) Elongation factor G-like protein|
          Length = 683

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 21  DILRSSKFQMDLFCLRERDLLKQFTDEVSRYLAQGESREKALMLSYQIAEDL 176
           D+L+   ++ D   ++E D+ + F D  S  L     +++ LM+ Y   ED+
Sbjct: 169 DLLKKKAYRYDGDKVQEEDMPESFNDMRSEILEDIVEQDEELMMRYLDGEDI 220

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>CLPP1_PROMP (Q7V1W0) ATP-dependent Clp protease proteolytic subunit 1 (EC|
           3.4.21.92) (Endopeptidase Clp 1)
          Length = 196

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
 Frame = +3

Query: 132 REKALMLSYQIAEDLARAFTERTILQIFLEDE---------MNAPAGSLKDVLGLLRSMY 284
           RE+ + L  Q+  D A     + +   FLE E         +N+P GS+ D LG+  +M 
Sbjct: 24  RERIIFLGEQVTSDTANRIVAQLL---FLEAEDPEKDIYMYINSPGGSVYDGLGIFDTMQ 80

Query: 285 VM------VCIDESAS 314
            +      VC+  +AS
Sbjct: 81  HVKPDIHTVCVGLAAS 96

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>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen|
           golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen)
          Length = 460

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 129 SREKALMLSYQIAEDLARAFTERTILQIFLEDEMNAPAGSLKDVLGLLRSMYVMVCIDES 308
           SR KAL         L R   +    QI L+  +     SLK+V  L R  Y      E 
Sbjct: 49  SRSKAL---------LKRQLEQSIREQILLKGHVTQLKESLKEVQ-LERDQYAEQIKGER 98

Query: 309 ASFL-RYGYLSRDKCSHREERSHDT 380
           A +  R   +S++ C+ +EE+ HDT
Sbjct: 99  AQWQQRMRKMSQEVCTLKEEKKHDT 123

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>ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)|
          Length = 610

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 202 HNDYICPATNQCTIDKSRRKSC 223

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>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane|
           protein) (Basic 24 kDa late endocytic intermediate
           component)
          Length = 203

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 316 KDADSSMHTITYIDLSKPNTSFKEPAGAFISSSKNICKIVRSV 188
           KD   ++H + Y+DL  PNT+  +      S+ + + K+ R V
Sbjct: 110 KDVTFNIHGVVYVDLDDPNTNTLD------SAVRKLSKLTREV 146

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>ISPG_CHLAB (Q5L669) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 606

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 295 HTITYIDLSKPNTSFK-EPAGAFISSSKNICK 203
           HT TY++L + N  F  E + +F+++SK I K
Sbjct: 290 HTTTYLNLPRKNNPFALENSESFVNASKKITK 321

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>ESR2_ORENI (Q9YH32) Estrogen receptor beta (ER-beta)|
          Length = 557

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 186 HNDYICPATNQCTIDKNRRKSC 207

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>ESRB1_CARAU (Q9W669) Estrogen receptor beta-1 (ER-beta-1)|
          Length = 568

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 201 HNDYICPATNQCTIDKNRRKSC 222

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>ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta)|
          Length = 559

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 187 HNDYICPATNQCTIDKNRRKSC 208

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>ESR2_PIG (Q9XSW2) Estrogen receptor beta (ER-beta)|
          Length = 526

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 177 HNDYICPATNQCTIDKNRRKSC 198

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>ESR2_ONCMY (P57782) Estrogen receptor beta (ER-beta)|
          Length = 568

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 209 HNDYICPATNQCTIDKNRRKSC 230

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>ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta)|
          Length = 575

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 192 HNDYICPATNQCTIDKNRRKSC 213

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>MUTS_CHLTR (O84797) DNA mismatch repair protein mutS|
          Length = 820

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 209 LQNCALGKCSS*VFSNLVAQHQSLFSAFPLCQIARYLVCELFQQIPLPQAE 57
           LQNCAL +     F  L+A         PLC + + L  EL Q++PL  +E
Sbjct: 383 LQNCALPEFLENKF--LIAP--------PLCSLIKTLSTELIQELPLKVSE 423

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>MUTS_CHLTA (Q3KKQ0) DNA mismatch repair protein mutS|
          Length = 820

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 209 LQNCALGKCSS*VFSNLVAQHQSLFSAFPLCQIARYLVCELFQQIPLPQAE 57
           LQNCAL +     F  L+A         PLC + + L  EL Q++PL  +E
Sbjct: 383 LQNCALPEFLENKF--LIAP--------PLCSLIKTLSTELIQELPLKVSE 423

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>ESR2_COTJA (O93511) Estrogen receptor beta (ER-beta)|
          Length = 472

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 136 HNDYICPATNQCTIDKNRRKSC 157

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>ESR2_CHICK (Q9PTU5) Estrogen receptor beta (ER-beta) (cERb)|
          Length = 472

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 136 HNDYICPATNQCTIDKNRRKSC 157

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>ESR2_MICUN (P57781) Estrogen receptor beta (ER-beta)|
          Length = 673

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 213 HNDYICPATNQCTIDKNRRKSC 234

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>ESR2_SHEEP (Q9TU15) Estrogen receptor beta (ER-beta)|
          Length = 527

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 177 HNDYICPATNQCTIDKNRRKSC 198

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>ESR2_BOVIN (Q9XSB5) Estrogen receptor beta (ER-beta)|
          Length = 527

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 177 HNDYICPATNQCTIDKNRRKSC 198

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>CEND1_HUMAN (Q8WZ64) Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           2) (PARX protein)
          Length = 1704

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 82  SKSRSLKQNKSIWNLELLNMSLV 14
           SK RSLK + SIW+ EL+ + +V
Sbjct: 735 SKVRSLKMDASIWSNELIELFIV 757

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>ESR2_STUVU (Q9PVE2) Estrogen receptor beta (ER-beta)|
          Length = 554

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 205 HNDYICPATNQCTIDKNRRKSC 226

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>ESR2_RAT (Q62986) Estrogen receptor beta (ER-beta)|
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 180 HNDYICPATNQCTIDKNRRKSC 201

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>ESR2_MOUSE (O08537) Estrogen receptor beta (ER-beta)|
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 180 HNDYICPATNQCTIDKNRRKSC 201

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>ESR2_HUMAN (Q92731) Estrogen receptor beta (ER-beta)|
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 180 HNDYICPATNQCTIDKNRRKSC 201

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>ESR2_CALJA (Q95171) Estrogen receptor beta (ER-beta)|
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 360 HGDYICPATNNHISEKMQIHLC 295
           H DYICPATN    +K +   C
Sbjct: 180 HNDYICPATNQCTIDKNRRKSC 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,720,565
Number of Sequences: 219361
Number of extensions: 1064247
Number of successful extensions: 3070
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3067
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result