ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
2gb|BT018840.1| Zea mays clone EL01N0553A12.d mRNA sequence 252 7e-64
3gb|AY106428.1| Zea mays PCO134965 mRNA sequence 252 7e-64
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
5dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
6ref|XM_805821.1| Trypanosoma cruzi strain CL Brener hypothetical... 48 0.021
7gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's H... 44 0.33
8emb|Z82278.1|CEM162 Caenorhabditis elegans Cosmid M162, complete... 44 0.33
9gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, co... 42 1.3
10gb|AC153895.5| Mus musculus 6 BAC RP23-114F22 (Roswell Park Canc... 42 1.3
11dbj|AB127067.1| Ceriagrion nipponicum mitochondrial gene for 16S... 42 1.3
12gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C... 42 1.3
13gb|AC131776.5| Mus musculus BAC clone RP24-318B19 from chromosom... 42 1.3
14gb|AY530305.1| Avipoxvirus isolate GB 724/01-20 4b core protein ... 40 5.1
15gb|AY530303.1| Pigeonpox virus 4b core protein gene, partial cds 40 5.1
16ref|XM_813700.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.1
17gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, co... 40 5.1
18emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on ch... 40 5.1
19emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on ch... 40 5.1
20emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in ... 40 5.1
21gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome ... 40 5.1
22gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosom... 40 5.1
23gb|AY846474.1| Elacatinus atronasus isolate Bahamas 1 tRNA-Thr (... 40 5.1
24gb|DQ131892.1| Avipoxvirus isolate WCV33-03 4b core protein gene... 40 5.1
25emb|AM050392.1| Avipoxvirus CVL partial P4b gene for 4b virion c... 40 5.1
26emb|AM050388.1| Avipoxvirus CVL partial P4b gene for 4b virion c... 40 5.1
27emb|AM050387.1| Avipoxvirus CVL partial P4b gene for 4b virion c... 40 5.1
28emb|AM050385.1| Avipoxvirus CVL partial P4b gene for 4b virion c... 40 5.1
29emb|AM050376.1| Avipoxvirus CVL partial P4b gene for 4b virion c... 40 5.1
30emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on ch... 40 5.1
31emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chr... 40 5.1
32dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.1

>dbj|AK066934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A09, full
            insert sequence
          Length = 2372

 Score =  323 bits (163), Expect = 2e-85
 Identities = 280/319 (87%)
 Strand = Plus / Plus

                                                                        
Query: 12   ctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgagggag 71
            |||||||||| || | |||| |||||||  ||||||||||| ||| ||||||||||||||
Sbjct: 1635 ctgacaagtggcacactaagaagctccagtttccagatggacttgctctgcttgagggag 1694

                                                                        
Query: 72   cgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaagc 131
            || ||||| |||||||  |||||    ||||| |||  ||||||||||||||| |||| |
Sbjct: 1695 cgagatttactgaaacgattcaccacggaggtttctaactatctggcacaaggagaaaac 1754

                                                                        
Query: 132  agagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttacc 191
            ||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| 
Sbjct: 1755 agagagaaggctttgatgctgagctaccaactcgctgaagacttagctagagcatttact 1814

                                                                        
Query: 192  gagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttta 251
            |||||||||||||||||||||||||||||||| |||| ||||  |||| |||||||||||
Sbjct: 1815 gagcgcacaattttgcaaatatttttggaggatgagaagaatattcctactggttcttta 1874

                                                                        
Query: 252  aaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgca 311
            |||||| ||||||||||||| |||||| | ||||||||||| |||||||| |||||||||
Sbjct: 1875 aaggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgca 1934

                               
Query: 312  tcttttctgagatatggtt 330
            || ||| ||||||||||||
Sbjct: 1935 tcctttttgagatatggtt 1953



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>gb|BT018840.1| Zea mays clone EL01N0553A12.d mRNA sequence
          Length = 2469

 Score =  252 bits (127), Expect = 7e-64
 Identities = 268/315 (85%)
 Strand = Plus / Plus

                                                                        
Query: 11   gctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgaggga 70
            ||||||||||  ||||||||||||||||||||||||||||||  |||||||||| |||||
Sbjct: 1703 gctgacaagtagcatattaaggagctccaagttccagatggacctgttctgcttaaggga 1762

                                                                        
Query: 71   gcgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaag 130
            | | ||||| ||||| |||||   ||| ||||| |||| | |||| || ||||| |||||
Sbjct: 1763 gagagatttactgaagcagtttgtagaggaggtttctctccatcttgcccaaggtgaaag 1822

                                                                        
Query: 131  cagagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttac 190
            ||||||||||||| |||||||||| || ||| ||||||||||||| |||||||| |||||
Sbjct: 1823 cagagaaaaggctttgatgctgagttatcaagttgctgaagacttggctagagcgtttac 1882

                                                                        
Query: 191  cgagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttt 250
             ||||| || ||  | ||||||||||||||||| |||||||||| |||| |||||||  |
Sbjct: 1883 tgagcgtacgatcctccaaatatttttggaggatgagatgaatgttccttctggttccct 1942

                                                                        
Query: 251  aaaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgc 310
            |||||| ||| ||||||| ||||| ||| | ||||||||||||  ||||||||||||  |
Sbjct: 1943 aaaggaggtactgggcttgctgagatctctatatgttatggtgaacatagatgaatccac 2002

                           
Query: 311  atcttttctgagata 325
            ||||||||| |||||
Sbjct: 2003 atcttttctaagata 2017



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>gb|AY106428.1| Zea mays PCO134965 mRNA sequence
          Length = 1659

 Score =  252 bits (127), Expect = 7e-64
 Identities = 268/315 (85%)
 Strand = Plus / Plus

                                                                        
Query: 11   gctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgaggga 70
            ||||||||||  ||||||||||||||||||||||||||||||  |||||||||| |||||
Sbjct: 848  gctgacaagtagcatattaaggagctccaagttccagatggacctgttctgcttaaggga 907

                                                                        
Query: 71   gcgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaag 130
            | | ||||| ||||| |||||   ||| ||||| |||| | |||| |||||||| |||||
Sbjct: 908  gagagatttactgaagcagtttgtagaggaggtttctctccatcttgcacaaggcgaaag 967

                                                                        
Query: 131  cagagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttac 190
            ||||||||||||| |||||||||| || ||| ||||||||||||| |||||||| |||||
Sbjct: 968  cagagaaaaggctttgatgctgagttatcaagttgctgaagacttggctagagcgtttac 1027

                                                                        
Query: 191  cgagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttt 250
             ||||| || ||  | ||||||||||||||||| |||||||||| |||| |||||||  |
Sbjct: 1028 tgagcgtacgatcctccaaatatttttggaggatgagatgaatgttccttctggttccct 1087

                                                                        
Query: 251  aaaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgc 310
            |||||| ||| ||||||| ||||| ||| | ||||| ||||||  ||||||||||||  |
Sbjct: 1088 aaaggaggtactgggcttgctgagatctctatatgtcatggtgaacatagatgaatccac 1147

                           
Query: 311  atcttttctgagata 325
            ||||||||| |||||
Sbjct: 1148 atcttttctaagata 1162



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  143 bits (72), Expect = 5e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                            
Query: 152      gagctaccaaattgctgaagacttagctagagcatttaccgagcgcacaattttgcaaat 211
                |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14347675 gagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaat 14347616

                                                            
Query: 212      atttttggaggacgagatgaatgctcctgctggttctttaaagg 255
                |||||||||||| |||| ||||  |||| |||||||||||||||
Sbjct: 14347615 atttttggaggatgagaagaatattcctactggttctttaaagg 14347572



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                            
Query: 253      aggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgcat 312
                ||||| ||||||||||||| |||||| | ||||||||||| |||||||| ||||||||||
Sbjct: 14347445 aggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcat 14347386

                                  
Query: 313      cttttctgagatatggtt 330
                | ||| ||||||||||||
Sbjct: 14347385 cctttttgagatatggtt 14347368



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 46       agatggatttgttctgcttgagggagcgggatttgctgaaacagttcacagacgaggtat 105
                ||||||| ||| |||||||||||||||| ||||| |||||||  |||||    ||||| |
Sbjct: 14347853 agatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggttt 14347794

                                                               
Query: 106      ctcgctatctggcacaaggggaaagcagagaaaaggctctgatgctg 152
                ||  ||||||||||||||| |||| |||||| |||||| ||||||||
Sbjct: 14347793 ctaactatctggcacaaggagaaaacagagagaaggctttgatgctg 14347747



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>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0526E12
          Length = 150872

 Score =  143 bits (72), Expect = 5e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                         
Query: 152   gagctaccaaattgctgaagacttagctagagcatttaccgagcgcacaattttgcaaat 211
             |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75550 gagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaat 75491

                                                         
Query: 212   atttttggaggacgagatgaatgctcctgctggttctttaaagg 255
             |||||||||||| |||| ||||  |||| |||||||||||||||
Sbjct: 75490 atttttggaggatgagaagaatattcctactggttctttaaagg 75447



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 253   aggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgcat 312
             ||||| ||||||||||||| |||||| | ||||||||||| |||||||| ||||||||||
Sbjct: 75320 aggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcat 75261

                               
Query: 313   cttttctgagatatggtt 330
             | ||| ||||||||||||
Sbjct: 75260 cctttttgagatatggtt 75243



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                         
Query: 46    agatggatttgttctgcttgagggagcgggatttgctgaaacagttcacagacgaggtat 105
             ||||||| ||| |||||||||||||||| ||||| |||||||  |||||    ||||| |
Sbjct: 75728 agatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggttt 75669

                                                            
Query: 106   ctcgctatctggcacaaggggaaagcagagaaaaggctctgatgctg 152
             ||  ||||||||||||||| |||| |||||| |||||| ||||||||
Sbjct: 75668 ctaactatctggcacaaggagaaaacagagagaaggctttgatgctg 75622



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>ref|XM_805821.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506725.30) partial mRNA
          Length = 6363

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 207  caaatatttttggaggacgagatgaatg 234
            ||||||||||||||| ||||||||||||
Sbjct: 3067 caaatatttttggagcacgagatgaatg 3094



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>gb|AC125670.4| Rattus norvegicus  BAC CH230-113E22 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 103836

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 130   gcagagaaaaggctctgatgctgagc 155
             ||||||||||||||| ||||||||||
Sbjct: 26713 gcagagaaaaggctcagatgctgagc 26738



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>emb|Z82278.1|CEM162 Caenorhabditis elegans Cosmid M162, complete sequence
          Length = 39977

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 314  ttttctgagatatggttatttg 335
            ||||||||||||||||||||||
Sbjct: 9333 ttttctgagatatggttatttg 9354



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>gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, complete sequence
          Length = 147662

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   acaaggggaaagcagagaaaa 139
             |||||||||||||||||||||
Sbjct: 90771 acaaggggaaagcagagaaaa 90791



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>gb|AC153895.5| Mus musculus 6 BAC RP23-114F22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187298

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   ggggaaagcagagaaaaggct 143
             |||||||||||||||||||||
Sbjct: 63792 ggggaaagcagagaaaaggct 63812



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>dbj|AB127067.1| Ceriagrion nipponicum mitochondrial gene for 16S rRNA, partial
           sequence, country:Japan:Fukuoka, Kasuya
          Length = 498

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 208 aaatatttttggaggacgaga 228
           |||||||||||||||||||||
Sbjct: 330 aaatatttttggaggacgaga 310



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>gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C15, complete sequence
          Length = 100635

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   acaaggggaaagcagagaaaa 139
             |||||||||||||||||||||
Sbjct: 69317 acaaggggaaagcagagaaaa 69297



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>gb|AC131776.5| Mus musculus BAC clone RP24-318B19 from chromosome 16, complete sequence
          Length = 181574

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 312    tcttttctgagatatggttat 332
              |||||||||||||||||||||
Sbjct: 174647 tcttttctgagatatggttat 174627



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>gb|AY530305.1| Avipoxvirus isolate GB 724/01-20 4b core protein gene, partial cds
          Length = 541

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 147 atctgcatcttttctgagat 128



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>gb|AY530303.1| Pigeonpox virus 4b core protein gene, partial cds
          Length = 541

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 147 atctgcatcttttctgagat 128



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>ref|XM_813700.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507089.154) partial mRNA
          Length = 6363

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 207  caaatatttttggaggacgagatgaatg 234
            ||||||| ||||||| ||||||||||||
Sbjct: 3067 caaatatctttggagcacgagatgaatg 3094



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>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence
          Length = 215566

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    acaattttgcaaatattttt 217
              ||||||||||||||||||||
Sbjct: 207051 acaattttgcaaatattttt 207070



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>emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on chromosome 1, complete
              sequence
          Length = 191686

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    ttctgagatatggttatttg 335
              ||||||||||||||||||||
Sbjct: 164757 ttctgagatatggttatttg 164738



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>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the
             5' end of the RIT1 gene for Ras-like without CAAX 1, the
             gene for a novel protein (KIAA0907), the ARHGEF2 gene for
             rho/rac guanine nucleotide exchange factor (GEF) 2, four
             novel genes, the SSR2 gene for signal sequence receptor
             beta (translocon-associated protein beta), the C1orf6 gene
             for chromosome 1 open reading frame 6, the gene for
             mitogen-activated protein-binding protein-interacting
             protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS
             oncogene family), the 5' end of the LMNA gene for lamin
             A/C and three CpG islands, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   aggggaaagcagagaaaagg 141
             ||||||||||||||||||||
Sbjct: 76408 aggggaaagcagagaaaagg 76427



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>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5,
             complete sequence
          Length = 156095

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   attttgcaaatatttttgga 220
             ||||||||||||||||||||
Sbjct: 25818 attttgcaaatatttttgga 25837



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>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence
          Length = 242359

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tgaagacttagctagagcat 186
              ||||||||||||||||||||
Sbjct: 158929 tgaagacttagctagagcat 158910



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>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence
          Length = 178072

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tgaagacttagctagagcat 186
              ||||||||||||||||||||
Sbjct: 175588 tgaagacttagctagagcat 175569



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>gb|AY846474.1| Elacatinus atronasus isolate Bahamas 1 tRNA-Thr (trnT) and tRNA-Pro
           (trnP) genes, complete sequence; and D-loop, partial
           sequence; mitochondrial
          Length = 503

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gctctgatgctgagctacca 160
           ||||||||||||||||||||
Sbjct: 25  gctctgatgctgagctacca 6



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>gb|DQ131892.1| Avipoxvirus isolate WCV33-03 4b core protein gene, partial cds
          Length = 584

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 170 atctgcatcttttctgagat 151



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>emb|AM050392.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein,
           isolate CVL 353/87
          Length = 526

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 137 atctgcatcttttctgagat 118



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>emb|AM050388.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein,
           isolate CVL 10/12/98
          Length = 545

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 170 atctgcatcttttctgagat 151



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>emb|AM050387.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein,
           isolate CVL 2/11/66
          Length = 507

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 134 atctgcatcttttctgagat 115



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>emb|AM050385.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein,
           isolate Peekham
          Length = 509

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 134 atctgcatcttttctgagat 115



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>emb|AM050376.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein,
           isolate CVL 1381/96
          Length = 588

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 atctgcatcttttctgagat 324
           ||||||||||||||||||||
Sbjct: 173 atctgcatcttttctgagat 154



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>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete
              sequence
          Length = 200242

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    acaattttgcaaatattttt 217
              ||||||||||||||||||||
Sbjct: 190956 acaattttgcaaatattttt 190937



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>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete
              sequence
          Length = 174638

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    gcttactgaggtctatgtat 284
              ||||||||||||||||||||
Sbjct: 106141 gcttactgaggtctatgtat 106160



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>dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-456I15, complete
              sequences
          Length = 154839

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aaggggaaagcagagaaaag 140
              ||||||||||||||||||||
Sbjct: 116304 aaggggaaagcagagaaaag 116323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,645,075
Number of Sequences: 3902068
Number of extensions: 3645075
Number of successful extensions: 91001
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90923
Number of HSP's gapped (non-prelim): 75
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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