Clone Name | basd2m01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A09, full insert sequence Length = 2372 Score = 323 bits (163), Expect = 2e-85 Identities = 280/319 (87%) Strand = Plus / Plus Query: 12 ctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgagggag 71 |||||||||| || | |||| ||||||| ||||||||||| ||| |||||||||||||| Sbjct: 1635 ctgacaagtggcacactaagaagctccagtttccagatggacttgctctgcttgagggag 1694 Query: 72 cgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaagc 131 || ||||| ||||||| ||||| ||||| ||| ||||||||||||||| |||| | Sbjct: 1695 cgagatttactgaaacgattcaccacggaggtttctaactatctggcacaaggagaaaac 1754 Query: 132 agagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttacc 191 ||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 1755 agagagaaggctttgatgctgagctaccaactcgctgaagacttagctagagcatttact 1814 Query: 192 gagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttta 251 |||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||| Sbjct: 1815 gagcgcacaattttgcaaatatttttggaggatgagaagaatattcctactggttcttta 1874 Query: 252 aaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgca 311 |||||| ||||||||||||| |||||| | ||||||||||| |||||||| ||||||||| Sbjct: 1875 aaggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgca 1934 Query: 312 tcttttctgagatatggtt 330 || ||| |||||||||||| Sbjct: 1935 tcctttttgagatatggtt 1953
>gb|BT018840.1| Zea mays clone EL01N0553A12.d mRNA sequence Length = 2469 Score = 252 bits (127), Expect = 7e-64 Identities = 268/315 (85%) Strand = Plus / Plus Query: 11 gctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgaggga 70 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 1703 gctgacaagtagcatattaaggagctccaagttccagatggacctgttctgcttaaggga 1762 Query: 71 gcgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaag 130 | | ||||| ||||| ||||| ||| ||||| |||| | |||| || ||||| ||||| Sbjct: 1763 gagagatttactgaagcagtttgtagaggaggtttctctccatcttgcccaaggtgaaag 1822 Query: 131 cagagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttac 190 ||||||||||||| |||||||||| || ||| ||||||||||||| |||||||| ||||| Sbjct: 1823 cagagaaaaggctttgatgctgagttatcaagttgctgaagacttggctagagcgtttac 1882 Query: 191 cgagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttt 250 ||||| || || | ||||||||||||||||| |||||||||| |||| ||||||| | Sbjct: 1883 tgagcgtacgatcctccaaatatttttggaggatgagatgaatgttccttctggttccct 1942 Query: 251 aaaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgc 310 |||||| ||| ||||||| ||||| ||| | |||||||||||| |||||||||||| | Sbjct: 1943 aaaggaggtactgggcttgctgagatctctatatgttatggtgaacatagatgaatccac 2002 Query: 311 atcttttctgagata 325 ||||||||| ||||| Sbjct: 2003 atcttttctaagata 2017
>gb|AY106428.1| Zea mays PCO134965 mRNA sequence Length = 1659 Score = 252 bits (127), Expect = 7e-64 Identities = 268/315 (85%) Strand = Plus / Plus Query: 11 gctgacaagtgacatattaaggagctccaagttccagatggatttgttctgcttgaggga 70 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 848 gctgacaagtagcatattaaggagctccaagttccagatggacctgttctgcttaaggga 907 Query: 71 gcgggatttgctgaaacagttcacagacgaggtatctcgctatctggcacaaggggaaag 130 | | ||||| ||||| ||||| ||| ||||| |||| | |||| |||||||| ||||| Sbjct: 908 gagagatttactgaagcagtttgtagaggaggtttctctccatcttgcacaaggcgaaag 967 Query: 131 cagagaaaaggctctgatgctgagctaccaaattgctgaagacttagctagagcatttac 190 ||||||||||||| |||||||||| || ||| ||||||||||||| |||||||| ||||| Sbjct: 968 cagagaaaaggctttgatgctgagttatcaagttgctgaagacttggctagagcgtttac 1027 Query: 191 cgagcgcacaattttgcaaatatttttggaggacgagatgaatgctcctgctggttcttt 250 ||||| || || | ||||||||||||||||| |||||||||| |||| ||||||| | Sbjct: 1028 tgagcgtacgatcctccaaatatttttggaggatgagatgaatgttccttctggttccct 1087 Query: 251 aaaggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgc 310 |||||| ||| ||||||| ||||| ||| | ||||| |||||| |||||||||||| | Sbjct: 1088 aaaggaggtactgggcttgctgagatctctatatgtcatggtgaacatagatgaatccac 1147 Query: 311 atcttttctgagata 325 ||||||||| ||||| Sbjct: 1148 atcttttctaagata 1162
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 143 bits (72), Expect = 5e-31 Identities = 96/104 (92%) Strand = Plus / Minus Query: 152 gagctaccaaattgctgaagacttagctagagcatttaccgagcgcacaattttgcaaat 211 |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 14347675 gagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaat 14347616 Query: 212 atttttggaggacgagatgaatgctcctgctggttctttaaagg 255 |||||||||||| |||| |||| |||| ||||||||||||||| Sbjct: 14347615 atttttggaggatgagaagaatattcctactggttctttaaagg 14347572 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 253 aggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgcat 312 ||||| ||||||||||||| |||||| | ||||||||||| |||||||| |||||||||| Sbjct: 14347445 aggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcat 14347386 Query: 313 cttttctgagatatggtt 330 | ||| |||||||||||| Sbjct: 14347385 cctttttgagatatggtt 14347368 Score = 77.8 bits (39), Expect = 2e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 46 agatggatttgttctgcttgagggagcgggatttgctgaaacagttcacagacgaggtat 105 ||||||| ||| |||||||||||||||| ||||| ||||||| ||||| ||||| | Sbjct: 14347853 agatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggttt 14347794 Query: 106 ctcgctatctggcacaaggggaaagcagagaaaaggctctgatgctg 152 || ||||||||||||||| |||| |||||| |||||| |||||||| Sbjct: 14347793 ctaactatctggcacaaggagaaaacagagagaaggctttgatgctg 14347747
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 143 bits (72), Expect = 5e-31 Identities = 96/104 (92%) Strand = Plus / Minus Query: 152 gagctaccaaattgctgaagacttagctagagcatttaccgagcgcacaattttgcaaat 211 |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 75550 gagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaat 75491 Query: 212 atttttggaggacgagatgaatgctcctgctggttctttaaagg 255 |||||||||||| |||| |||| |||| ||||||||||||||| Sbjct: 75490 atttttggaggatgagaagaatattcctactggttctttaaagg 75447 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 253 aggatgtattgggcttactgaggtctatgtatgttatggtgtgcatagatgaatctgcat 312 ||||| ||||||||||||| |||||| | ||||||||||| |||||||| |||||||||| Sbjct: 75320 aggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcat 75261 Query: 313 cttttctgagatatggtt 330 | ||| |||||||||||| Sbjct: 75260 cctttttgagatatggtt 75243 Score = 77.8 bits (39), Expect = 2e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 46 agatggatttgttctgcttgagggagcgggatttgctgaaacagttcacagacgaggtat 105 ||||||| ||| |||||||||||||||| ||||| ||||||| ||||| ||||| | Sbjct: 75728 agatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggttt 75669 Query: 106 ctcgctatctggcacaaggggaaagcagagaaaaggctctgatgctg 152 || ||||||||||||||| |||| |||||| |||||| |||||||| Sbjct: 75668 ctaactatctggcacaaggagaaaacagagagaaggctttgatgctg 75622
>ref|XM_805821.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506725.30) partial mRNA Length = 6363 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 207 caaatatttttggaggacgagatgaatg 234 ||||||||||||||| |||||||||||| Sbjct: 3067 caaatatttttggagcacgagatgaatg 3094
>gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 103836 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 130 gcagagaaaaggctctgatgctgagc 155 ||||||||||||||| |||||||||| Sbjct: 26713 gcagagaaaaggctcagatgctgagc 26738
>emb|Z82278.1|CEM162 Caenorhabditis elegans Cosmid M162, complete sequence Length = 39977 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 314 ttttctgagatatggttatttg 335 |||||||||||||||||||||| Sbjct: 9333 ttttctgagatatggttatttg 9354
>gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, complete sequence Length = 147662 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 acaaggggaaagcagagaaaa 139 ||||||||||||||||||||| Sbjct: 90771 acaaggggaaagcagagaaaa 90791
>gb|AC153895.5| Mus musculus 6 BAC RP23-114F22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187298 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ggggaaagcagagaaaaggct 143 ||||||||||||||||||||| Sbjct: 63792 ggggaaagcagagaaaaggct 63812
>dbj|AB127067.1| Ceriagrion nipponicum mitochondrial gene for 16S rRNA, partial sequence, country:Japan:Fukuoka, Kasuya Length = 498 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 aaatatttttggaggacgaga 228 ||||||||||||||||||||| Sbjct: 330 aaatatttttggaggacgaga 310
>gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C15, complete sequence Length = 100635 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 acaaggggaaagcagagaaaa 139 ||||||||||||||||||||| Sbjct: 69317 acaaggggaaagcagagaaaa 69297
>gb|AC131776.5| Mus musculus BAC clone RP24-318B19 from chromosome 16, complete sequence Length = 181574 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 tcttttctgagatatggttat 332 ||||||||||||||||||||| Sbjct: 174647 tcttttctgagatatggttat 174627
>gb|AY530305.1| Avipoxvirus isolate GB 724/01-20 4b core protein gene, partial cds Length = 541 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 147 atctgcatcttttctgagat 128
>gb|AY530303.1| Pigeonpox virus 4b core protein gene, partial cds Length = 541 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 147 atctgcatcttttctgagat 128
>ref|XM_813700.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507089.154) partial mRNA Length = 6363 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 caaatatttttggaggacgagatgaatg 234 ||||||| ||||||| |||||||||||| Sbjct: 3067 caaatatctttggagcacgagatgaatg 3094
>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence Length = 215566 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acaattttgcaaatattttt 217 |||||||||||||||||||| Sbjct: 207051 acaattttgcaaatattttt 207070
>emb|AL359197.20| Human DNA sequence from clone RP11-498I18 on chromosome 1, complete sequence Length = 191686 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ttctgagatatggttatttg 335 |||||||||||||||||||| Sbjct: 164757 ttctgagatatggttatttg 164738
>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the 5' end of the RIT1 gene for Ras-like without CAAX 1, the gene for a novel protein (KIAA0907), the ARHGEF2 gene for rho/rac guanine nucleotide exchange factor (GEF) 2, four novel genes, the SSR2 gene for signal sequence receptor beta (translocon-associated protein beta), the C1orf6 gene for chromosome 1 open reading frame 6, the gene for mitogen-activated protein-binding protein-interacting protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS oncogene family), the 5' end of the LMNA gene for lamin A/C and three CpG islands, complete sequence Length = 205463 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aggggaaagcagagaaaagg 141 |||||||||||||||||||| Sbjct: 76408 aggggaaagcagagaaaagg 76427
>emb|CR407555.9| Zebrafish DNA sequence from clone DKEY-260H8 in linkage group 5, complete sequence Length = 156095 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 attttgcaaatatttttgga 220 |||||||||||||||||||| Sbjct: 25818 attttgcaaatatttttgga 25837
>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence Length = 242359 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tgaagacttagctagagcat 186 |||||||||||||||||||| Sbjct: 158929 tgaagacttagctagagcat 158910
>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence Length = 178072 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tgaagacttagctagagcat 186 |||||||||||||||||||| Sbjct: 175588 tgaagacttagctagagcat 175569
>gb|AY846474.1| Elacatinus atronasus isolate Bahamas 1 tRNA-Thr (trnT) and tRNA-Pro (trnP) genes, complete sequence; and D-loop, partial sequence; mitochondrial Length = 503 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gctctgatgctgagctacca 160 |||||||||||||||||||| Sbjct: 25 gctctgatgctgagctacca 6
>gb|DQ131892.1| Avipoxvirus isolate WCV33-03 4b core protein gene, partial cds Length = 584 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 170 atctgcatcttttctgagat 151
>emb|AM050392.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein, isolate CVL 353/87 Length = 526 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 137 atctgcatcttttctgagat 118
>emb|AM050388.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein, isolate CVL 10/12/98 Length = 545 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 170 atctgcatcttttctgagat 151
>emb|AM050387.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein, isolate CVL 2/11/66 Length = 507 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 134 atctgcatcttttctgagat 115
>emb|AM050385.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein, isolate Peekham Length = 509 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 134 atctgcatcttttctgagat 115
>emb|AM050376.1| Avipoxvirus CVL partial P4b gene for 4b virion core protein, isolate CVL 1381/96 Length = 588 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atctgcatcttttctgagat 324 |||||||||||||||||||| Sbjct: 173 atctgcatcttttctgagat 154
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete sequence Length = 200242 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 acaattttgcaaatattttt 217 |||||||||||||||||||| Sbjct: 190956 acaattttgcaaatattttt 190937
>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete sequence Length = 174638 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gcttactgaggtctatgtat 284 |||||||||||||||||||| Sbjct: 106141 gcttactgaggtctatgtat 106160
>dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-456I15, complete sequences Length = 154839 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aaggggaaagcagagaaaag 140 |||||||||||||||||||| Sbjct: 116304 aaggggaaagcagagaaaag 116323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,645,075 Number of Sequences: 3902068 Number of extensions: 3645075 Number of successful extensions: 91001 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90923 Number of HSP's gapped (non-prelim): 75 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)