Clone Name | basd2l23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds Length = 1260 Score = 77.8 bits (39), Expect = 2e-12 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 1 ggtggagagcttgaacaagataaatggcggggtagctggtggacctgtcggtgca 55 |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| Sbjct: 585 ggtggagagcttgaacaagataaatggcgggg-agctggttgacctgtccgtgca 638
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 0.52 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gctggtggacctgtcggtgc 54 |||||||||||||||||||| Sbjct: 113613 gctggtggacctgtcggtgc 113594
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 0.52 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gctggtggacctgtcggtgc 54 |||||||||||||||||||| Sbjct: 6289475 gctggtggacctgtcggtgc 6289494
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 agctggtggacctgtcgg 51 |||||||||||||||||| Sbjct: 5402875 agctggtggacctgtcgg 5402858
>gb|AY300819.1| Bovine papillomavirus isolate BAPV3 major capsid protein L1 gene, partial cds Length = 416 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gtggagagcttgaacaag 19 |||||||||||||||||| Sbjct: 365 gtggagagcttgaacaag 382
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 agctggtggacctgtcgg 51 |||||||||||||||||| Sbjct: 4411994 agctggtggacctgtcgg 4411977
>ref|XM_794824.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC576628 (LOC576628), mRNA Length = 1326 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 33 tagctggtggacctgtcg 50 |||||||||||||||||| Sbjct: 546 tagctggtggacctgtcg 529
>gb|AC091921.3| Homo sapiens chromosome 5 clone RP11-256N5, complete sequence Length = 172192 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ggagagcttgaacaagat 21 |||||||||||||||||| Sbjct: 25091 ggagagcttgaacaagat 25108
>dbj|AP001732.1| Homo sapiens genomic DNA, chromosome 21q, section 76/105 Length = 340000 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gcttgaacaagataaatg 26 |||||||||||||||||| Sbjct: 238149 gcttgaacaagataaatg 238132
>gb|AC013401.10| Homo sapiens BAC clone RP11-98N11 from 2, complete sequence Length = 168595 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 gagcttgaacaagataaa 24 |||||||||||||||||| Sbjct: 56499 gagcttgaacaagataaa 56516
>gb|AC113414.3| Homo sapiens chromosome 5 clone RP11-541P9, complete sequence Length = 166950 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ggagagcttgaacaagat 21 |||||||||||||||||| Sbjct: 119648 ggagagcttgaacaagat 119665
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gcttgaacaagataaatg 26 |||||||||||||||||| Sbjct: 180912 gcttgaacaagataaatg 180895
>dbj|AP001038.2| Homo sapiens genomic DNA, chromosome 21, clone:P178O22, ERG-ETS2 region, complete sequence Length = 141885 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 gcttgaacaagataaatg 26 |||||||||||||||||| Sbjct: 112563 gcttgaacaagataaatg 112546 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 340,234 Number of Sequences: 3902068 Number of extensions: 340234 Number of successful extensions: 23427 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23384 Number of HSP's gapped (non-prelim): 43 length of query: 58 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 37 effective length of database: 17,151,101,840 effective search space: 634590768080 effective search space used: 634590768080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)