Clone Name | basd2l22 |
---|---|
Clone Library Name | barley_pub |
>gb|BC071110.1| Xenopus laevis MGC81280 protein, mRNA (cDNA clone MGC:81280 IMAGE:6631808), complete cds Length = 1877 Score = 488 bits (246), Expect = e-134 Identities = 248/249 (99%) Strand = Plus / Minus Query: 1 tcaacattttgtctagctacctttgattgatatatttgatgagtacagctcactcctctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 tcaacattttgtctagctacctttgattgatatatttgatgagtacagctcactcctctg 1522 Query: 61 nggtgagctttgggaaaggttaccgtggtactgctgtgagcaaaacattctctagagaca 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 aggtgagctttgggaaaggttaccgtggtactgctgtgagcaaaacattctctagagaca 1462 Query: 121 cttcaggctctgtgtaatactgcaatgctgcaatgtatcccatacgctgtaggtaatcta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 cttcaggctctgtgtaatactgcaatgctgcaatgtatcccatacgctgtaggtaatcta 1402 Query: 181 cacgtccgtagtctatgagtagcttgcacagtcgccccaagttctccctctccttcactg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 cacgtccgtagtctatgagtagcttgcacagtcgccccaagttctccctctccttcactg 1342 Query: 241 tgagaaacc 249 ||||||||| Sbjct: 1341 tgagaaacc 1333
>emb|CT025436.2| Xenopus tropicalis finished cDNA, clone TGas123e04 Length = 2240 Score = 311 bits (157), Expect = 1e-81 Identities = 196/208 (94%), Gaps = 1/208 (0%) Strand = Plus / Minus Query: 44 tacagctcactcctc-tgnggtgagctttgggaaaggttaccgtggtactgctgtgagca 102 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 1518 tacagctcactcctcatgaggtgagctttgggataggttaccgtggtattgctgtgagca 1459 Query: 103 aaacattctctagagacacttcaggctctgtgtaatactgcaatgctgcaatgtatccca 162 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 aaacattttctagagacacttcaggctctgtgtaatactgcaatgctgcaatgtatccca 1399 Query: 163 tacgctgtaggtaatctacacgtccgtagtctatgagtagcttgcacagtcgccccaagt 222 ||||||||||| |||||||||| || ||||||||||||||||||||||||| |||||| Sbjct: 1398 tacgctgtaggaaatctacacggccatagtctatgagtagcttgcacagtcttcccaagc 1339 Query: 223 tctccctctccttcactgtgagaaacct 250 ||||||||||||||||||| |||||||| Sbjct: 1338 tctccctctccttcactgtcagaaacct 1311
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17, complete sequence Length = 154824 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 518 aatattatgacagaattttctta 540 ||||||||||||||||||||||| Sbjct: 148716 aatattatgacagaattttctta 148694
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17, complete sequence Length = 185139 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 518 aatattatgacagaattttctta 540 ||||||||||||||||||||||| Sbjct: 139228 aatattatgacagaattttctta 139206
>gb|AY940168.1| Cyanophage P-SSM4, complete genome Length = 178249 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 ttgattgatatatttgatgagt 44 |||||||||||||||||||||| Sbjct: 147889 ttgattgatatatttgatgagt 147910
>emb|AJ341335.1|HSA341335 Homo sapiens genomic sequence surrounding NotI site, clone NR3-BK13R Length = 821 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 140 ctgcaatgctgcaatgtatccc 161 |||||||||||||||||||||| Sbjct: 319 ctgcaatgctgcaatgtatccc 340
>gb|AY262686.1| Glycine max cultivar Williams 82 BAC clone Gm_ISb001_104_J07, complete sequence Length = 103334 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 agaaacctaaaaattaaagga 263 ||||||||||||||||||||| Sbjct: 64146 agaaacctaaaaattaaagga 64126
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ttttcttaataactatcaatg 553 ||||||||||||||||||||| Sbjct: 174791 ttttcttaataactatcaatg 174771
>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence Length = 169366 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 ttttcttaataactatcaatg 553 ||||||||||||||||||||| Sbjct: 128437 ttttcttaataactatcaatg 128457
>emb|AL390055.14| Human DNA sequence from clone RP11-140A24 on chromosome 6 Contains STSs and GSSs, complete sequence Length = 47323 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 aaaaattaaaggaacataggtgaag 275 ||||||||||||||||| ||||||| Sbjct: 47194 aaaaattaaaggaacatgggtgaag 47218
>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9, complete sequence Length = 210830 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 517 taatattatgacagaattttc 537 ||||||||||||||||||||| Sbjct: 67903 taatattatgacagaattttc 67883
>gb|AC166002.3| Nomascus leucogenys leucogenys clone CH271-400K18, complete sequence Length = 195728 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 ttctttaatattatgacagaatttt 536 |||||| |||||||||||||||||| Sbjct: 130328 ttctttgatattatgacagaatttt 130352
>gb|AC138062.2| Homo sapiens 12 BAC RP11-76D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 14394 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 ccaaaacacagtgtttataaa 338 ||||||||||||||||||||| Sbjct: 6888 ccaaaacacagtgtttataaa 6908
>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete sequence Length = 141401 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 231 tccttcactgtgagaaacctaaaaa 255 |||||||||||||||||| |||||| Sbjct: 112420 tccttcactgtgagaaacataaaaa 112396
>ref|XM_950913.1| Neurospora crassa OR74A hypothetical protein (NCU01638.1) partial mRNA Length = 5025 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ttctccctctccttcactgt 241 |||||||||||||||||||| Sbjct: 912 ttctccctctccttcactgt 893
>ref|XM_328076.1| Neurospora crassa OR74A hypothetical protein (NCU01638.1) partial mRNA Length = 5025 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ttctccctctccttcactgt 241 |||||||||||||||||||| Sbjct: 912 ttctccctctccttcactgt 893
>gb|BT012736.1| Lycopersicon esculentum clone 113674R, mRNA sequence Length = 2362 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 aaaatatagcttagttattattac 306 |||||| ||||||||||||||||| Sbjct: 2324 aaaatagagcttagttattattac 2301
>gb|AY915164.1| Schistosoma japonicum SJCHGC03187 protein mRNA, complete cds Length = 702 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 ttttgtacttttatcttatt 508 |||||||||||||||||||| Sbjct: 74 ttttgtacttttatcttatt 55
>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE Length = 123473 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aggaacataggtgaagcaca 279 |||||||||||||||||||| Sbjct: 107232 aggaacataggtgaagcaca 107251
>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7, complete sequence Length = 168455 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ttaatattatgacagaattt 535 |||||||||||||||||||| Sbjct: 67439 ttaatattatgacagaattt 67420
>gb|AC147741.11| Medicago truncatula clone mth2-17b23, complete sequence Length = 110572 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 aggaacataggtgaagcaca 279 |||||||||||||||||||| Sbjct: 56582 aggaacataggtgaagcaca 56563
>emb|AL445072.17| Human DNA sequence from clone RP11-13E5 on chromosome X Contains a novel gene, the gene for a novel protein similar to KIAA1892 and a CpG island, complete sequence Length = 134277 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 agaaaatatagcttagttat 300 |||||||||||||||||||| Sbjct: 8634 agaaaatatagcttagttat 8615
>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains three novel genes, the OTX3 gene for orthodenticle homolog 3 (Drosophila) and a CpG island, complete sequence Length = 105345 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tgatgtcagaccaaggaatt 457 |||||||||||||||||||| Sbjct: 83009 tgatgtcagaccaaggaatt 83028
>gb|AF334514.1| Tasmacetus shepherdi 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 424 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gaaacctaaaaattaaagga 263 |||||||||||||||||||| Sbjct: 340 gaaacctaaaaattaaagga 359
>emb|AL670001.1|NCB14H13 Neurospora crassa DNA linkage group II BAC clone B14H13 Length = 67890 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ttctccctctccttcactgt 241 |||||||||||||||||||| Sbjct: 55597 ttctccctctccttcactgt 55578
>emb|AL670543.1|NCB7K22 Neurospora crassa DNA linkage group II BAC clone B7K22 Length = 88306 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ttctccctctccttcactgt 241 |||||||||||||||||||| Sbjct: 20992 ttctccctctccttcactgt 20973
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 caaaacattctctagagaca 120 |||||||||||||||||||| Sbjct: 73856 caaaacattctctagagaca 73875
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 caaaacattctctagagaca 120 |||||||||||||||||||| Sbjct: 52764 caaaacattctctagagaca 52783
>gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, complete sequence Length = 172689 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ctccttcactgtgagaaacc 249 |||||||||||||||||||| Sbjct: 162426 ctccttcactgtgagaaacc 162407
>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence Length = 166581 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 tgtgaaataccctgcaaggctgct 393 ||||||||||| |||||||||||| Sbjct: 141084 tgtgaaataccatgcaaggctgct 141061
>gb|AF411648.1| Xiphophorus montezumae isolate XimoB20 MHC class I alpha antigen gene, partial cds Length = 916 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tgtgagaaacctaaaaatta 258 |||||||||||||||||||| Sbjct: 302 tgtgagaaacctaaaaatta 283
>gb|AF411647.1| Xiphophorus multilineatus isolate XimuB15 MHC class I alpha antigen gene, partial cds Length = 912 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tgtgagaaacctaaaaatta 258 |||||||||||||||||||| Sbjct: 302 tgtgagaaacctaaaaatta 283
>gb|AF411646.1| Xiphophorus continens isolate XicoB18 MHC class I alpha antigen gene, partial cds Length = 915 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tgtgagaaacctaaaaatta 258 |||||||||||||||||||| Sbjct: 301 tgtgagaaacctaaaaatta 282
>gb|AF411645.1| Xiphophorus continens isolate XicoB19 MHC class I alpha antigen gene, partial cds Length = 910 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tgtgagaaacctaaaaatta 258 |||||||||||||||||||| Sbjct: 301 tgtgagaaacctaaaaatta 282
>gb|AC091988.3| Homo sapiens chromosome 5 clone RP11-73G8, complete sequence Length = 148263 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 agaaaatatagcttagttattatt 304 ||||||||||||||||| |||||| Sbjct: 56064 agaaaatatagcttagtgattatt 56087
>gb|AC011390.3| Homo sapiens chromosome 5 clone CTB-176I15, complete sequence Length = 56173 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cctctccttcactgtgagaa 246 |||||||||||||||||||| Sbjct: 23554 cctctccttcactgtgagaa 23573
>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence Length = 171080 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tgtgaaataccctgcaaggctgct 393 ||||||||||| |||||||||||| Sbjct: 121315 tgtgaaataccatgcaaggctgct 121338
>gb|AC023134.5| Homo sapiens chromosome 5 clone RP11-463C5, complete sequence Length = 172805 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 ttttcttaataactatcaat 552 |||||||||||||||||||| Sbjct: 18504 ttttcttaataactatcaat 18485
>gb|AC025439.5| Homo sapiens chromosome 5 clone CTC-480E9, complete sequence Length = 125278 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 ttttcttaataactatcaat 552 |||||||||||||||||||| Sbjct: 9397 ttttcttaataactatcaat 9378
>gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N12, complete sequence Length = 172043 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 agaaaatatagcttagttattatt 304 ||||||||||||||||| |||||| Sbjct: 9210 agaaaatatagcttagtgattatt 9187
>gb|AC093761.3| Homo sapiens BAC clone RP11-89I4 from 4, complete sequence Length = 155154 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 ctctagagacacttcaggctctgt 133 ||||||||||||||||| |||||| Sbjct: 102915 ctctagagacacttcagcctctgt 102892
>gb|AC034211.4|AC034211 Homo sapiens chromosome 5 clone CTC-556K20, complete sequence Length = 112902 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 ttttcttaataactatcaat 552 |||||||||||||||||||| Sbjct: 74078 ttttcttaataactatcaat 74059
>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete sequence Length = 126143 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 tgtgaaataccctgcaaggctgct 393 ||||||||||| |||||||||||| Sbjct: 40159 tgtgaaataccatgcaaggctgct 40136
>gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189456 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 atatgtgatgtcagaccaaggaat 456 |||| ||||||||||||||||||| Sbjct: 111875 atatttgatgtcagaccaaggaat 111852
>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence Length = 117052 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tgtgaaataccctgcaaggctgct 393 ||||||||||| |||||||||||| Sbjct: 42430 tgtgaaataccatgcaaggctgct 42453
>emb|AJ243213.1|HSA243213 Homo sapiens partial 5-HT4 receptor gene, exons 2 to 5 Length = 130985 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cctctccttcactgtgagaa 246 |||||||||||||||||||| Sbjct: 26087 cctctccttcactgtgagaa 26068
>gb|AC153834.2| Mus musculus 6 BAC RP23-367J4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 152354 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 ttaaaggaacataggtgaagcaca 279 |||||||||||||||| ||||||| Sbjct: 34213 ttaaaggaacataggtaaagcaca 34236
>gb|AY940097.1| Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4) gene, complete cds Length = 279061 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 ttttcttaataactatcaat 552 |||||||||||||||||||| Sbjct: 180905 ttttcttaataactatcaat 180886
>emb|Z68880.1|CET14G10 Caenorhabditis elegans Cosmid T14G10, complete sequence Length = 22920 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ttgttttgtacttttatctt 505 |||||||||||||||||||| Sbjct: 12863 ttgttttgtacttttatctt 12882
>gb|AC155326.8| Mus musculus 6 BAC RP24-72P18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 184159 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 ttaaaggaacataggtgaagcaca 279 |||||||||||||||| ||||||| Sbjct: 164916 ttaaaggaacataggtaaagcaca 164939
>emb|AL670603.6| Mouse DNA sequence from clone RP23-276M23 on chromosome 4, complete sequence Length = 173696 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 tctccttcactgtgagaaac 248 |||||||||||||||||||| Sbjct: 62904 tctccttcactgtgagaaac 62885 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,322,423 Number of Sequences: 3902068 Number of extensions: 6322423 Number of successful extensions: 147130 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147018 Number of HSP's gapped (non-prelim): 111 length of query: 555 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 532 effective length of database: 17,143,297,704 effective search space: 9120234378528 effective search space used: 9120234378528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)