Clone Name | basd3a21 |
---|---|
Clone Library Name | barley_pub |
>MDH_COLP3 (Q47VL0) Malate dehydrogenase (EC 1.1.1.37)| Length = 311 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = -2 Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEASVTV 141 GH G IL L VEG +D E AA+ PR+ +A + GG A++++ Sbjct: 176 GHSGTTILPLLSQVEGATFSDEEVAALT----PRIQNAGTEVVEAKAGGGSATLSM 227
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -2 Query: 299 GAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEASVTVPPKGAPH 120 G +LG QD+ G + +G+ +++ P P+ +R P + TV P+G P Sbjct: 183 GLTVLGTQDL--GEKTFEGDIQELLISPDPQAAFQACERYLPDCDNLAPAATVAPQGEPE 240 Query: 119 LP 114 P Sbjct: 241 TP 242
>MDH_SHEON (P82177) Malate dehydrogenase (EC 1.1.1.37)| Length = 311 Score = 30.8 bits (68), Expect = 2.5 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -2 Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSG 162 D+ + I GH G IL L VEG +D E A++ R + V +A GS ++S Sbjct: 168 DVKINVIGGHSGVTILPLLSQVEGVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSM 227 Query: 161 GEAS 150 G+A+ Sbjct: 228 GQAA 231
>MDH_PHOPR (P37226) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEA 153 D+ + I GH G IL L VEG +D E A+ PR+ +A + GG A Sbjct: 168 DIQVPVIGGHSGVTILPLLSQVEGVEFSDEEIKALT----PRIQNAGTEVVEAKAGGGSA 223 Query: 152 SVTV 141 ++++ Sbjct: 224 TLSM 227
>MDH_PHOLL (Q7MYW9) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 2.5 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -2 Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSG 162 ++ + I GH G IL L + G DGE AA+ R + V +A GS ++S Sbjct: 168 EIEVPVIGGHSGVTILPLLSQIPGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSM 227 Query: 161 GEAS 150 G+A+ Sbjct: 228 GQAA 231
>MDH_VIBVY (Q7MP97) Malate dehydrogenase (EC 1.1.1.37)| Length = 310 Score = 30.4 bits (67), Expect = 3.2 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -2 Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150 GH G IL L VEG +D E AA+ R + V +A GS ++S G+A+ Sbjct: 176 GHSGVTILPLLSQVEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231
>MDH_VIBVU (Q8DEC2) Malate dehydrogenase (EC 1.1.1.37)| Length = 310 Score = 30.4 bits (67), Expect = 3.2 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -2 Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150 GH G IL L VEG +D E AA+ R + V +A GS ++S G+A+ Sbjct: 176 GHSGVTILPLLSQVEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231
>MDH_VIBCH (Q9KUT3) Malate dehydrogenase (EC 1.1.1.37)| Length = 311 Score = 30.0 bits (66), Expect = 4.2 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150 GH G IL L VEG D E AA+ R + V +A GS ++S G+A+ Sbjct: 176 GHSGVTILPLLSQVEGVSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231
>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS| Length = 875 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -2 Query: 326 GLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRV 204 GL A + R EIL + EG R + EAAA LR +P V Sbjct: 791 GLPASVVERAREILATLEEQEGERKSRREAAAQRLRRQPAV 831
>GGA2_YEAST (P38817) ADP-ribosylation factor-binding protein GGA2| (Golgi-localized, gamma ear-containing, ARF-binding protein 2) Length = 585 Score = 28.9 bits (63), Expect = 9.3 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 264 FDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQLKITFLEAKDIT 443 + + + + M Y D ++ Y +A P SE V+KPSNQLK A +I Sbjct: 138 YQTICKHSSYKNDMGYIRDMHRLLKYKG-YAFPKISESDLAVLKPSNQLK----TASEIQ 192 Query: 444 ELGTLKEASKL 476 + + +A+KL Sbjct: 193 KEQEIAQAAKL 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,800,534 Number of Sequences: 219361 Number of extensions: 1137899 Number of successful extensions: 3661 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3539 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3658 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)