>MDH_COLP3 (Q47VL0) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 311

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEASVTV 141
           GH G  IL L   VEG   +D E AA+     PR+ +A  +       GG A++++
Sbjct: 176 GHSGTTILPLLSQVEGATFSDEEVAALT----PRIQNAGTEVVEAKAGGGSATLSM 227

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 299 GAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEASVTVPPKGAPH 120
           G  +LG QD+  G +  +G+   +++ P P+      +R  P       + TV P+G P 
Sbjct: 183 GLTVLGTQDL--GEKTFEGDIQELLISPDPQAAFQACERYLPDCDNLAPAATVAPQGEPE 240

Query: 119 LP 114
            P
Sbjct: 241 TP 242

>MDH_SHEON (P82177) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 311

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSG 162
           D+ +  I GH G  IL L   VEG   +D E A++  R +     V +A    GS ++S 
Sbjct: 168 DVKINVIGGHSGVTILPLLSQVEGVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSM 227

Query: 161 GEAS 150
           G+A+
Sbjct: 228 GQAA 231

>MDH_PHOPR (P37226) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 312

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRVCDADQQRGSPSVSGGEA 153
           D+ +  I GH G  IL L   VEG   +D E  A+     PR+ +A  +       GG A
Sbjct: 168 DIQVPVIGGHSGVTILPLLSQVEGVEFSDEEIKALT----PRIQNAGTEVVEAKAGGGSA 223

Query: 152 SVTV 141
           ++++
Sbjct: 224 TLSM 227

>MDH_PHOLL (Q7MYW9) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 312

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 332 DLGLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSG 162
           ++ +  I GH G  IL L   + G    DGE AA+  R +     V +A    GS ++S 
Sbjct: 168 EIEVPVIGGHSGVTILPLLSQIPGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSM 227

Query: 161 GEAS 150
           G+A+
Sbjct: 228 GQAA 231

>MDH_VIBVY (Q7MP97) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 310

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150
           GH G  IL L   VEG   +D E AA+  R +     V +A    GS ++S G+A+
Sbjct: 176 GHSGVTILPLLSQVEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231

>MDH_VIBVU (Q8DEC2) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 310

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150
           GH G  IL L   VEG   +D E AA+  R +     V +A    GS ++S G+A+
Sbjct: 176 GHSGVTILPLLSQVEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231

>MDH_VIBCH (Q9KUT3) Malate dehydrogenase (EC 1.1.1.37)|
          Length = 311

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 308 GHRGAEILGLQDVVEGRRHADGEAAAVVLRPR---PRVCDADQQRGSPSVSGGEAS 150
           GH G  IL L   VEG    D E AA+  R +     V +A    GS ++S G+A+
Sbjct: 176 GHSGVTILPLLSQVEGVSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAA 231

>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS|
          Length = 875

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 326 GLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRV 204
           GL A +  R  EIL   +  EG R +  EAAA  LR +P V
Sbjct: 791 GLPASVVERAREILATLEEQEGERKSRREAAAQRLRRQPAV 831

>GGA2_YEAST (P38817) ADP-ribosylation factor-binding protein GGA2|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 2)
          Length = 585

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 264 FDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQLKITFLEAKDIT 443
           +  + +   +   M Y  D  ++  Y   +A P  SE    V+KPSNQLK     A +I 
Sbjct: 138 YQTICKHSSYKNDMGYIRDMHRLLKYKG-YAFPKISESDLAVLKPSNQLK----TASEIQ 192

Query: 444 ELGTLKEASKL 476
           +   + +A+KL
Sbjct: 193 KEQEIAQAAKL 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,800,534
Number of Sequences: 219361
Number of extensions: 1137899
Number of successful extensions: 3661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3658
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)