Clone Name | basd3a20 |
---|---|
Clone Library Name | barley_pub |
>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA| protein 1) Length = 124 Score = 43.1 bits (100), Expect = 6e-04 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = -2 Query: 390 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 214 +SP H R++ T + FT++FT FFS F H T SLSV+++YLAL G Sbjct: 3 DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59
>TAR1_KLULA (Q6CQE5) Protein TAR1| Length = 109 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/35 (54%), Positives = 25/35 (71%) Frame = -2 Query: 318 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 214 + FT++FT FFS F H T SLSV+++YLAL G Sbjct: 10 NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44
>E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein)| Length = 598 Score = 33.1 bits (74), Expect = 0.67 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = -2 Query: 558 FNIKSVRTSA*FHPSFILVMDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPA 379 +N S RT + P F R+P GS + +P++ R + SG L Q S Sbjct: 425 YNSPSDRTKS---PKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRC 481 Query: 378 HSSTGTRSEITFPSH 334 ++S+G+ SE + H Sbjct: 482 NTSSGSESENSNREH 496
>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3960 Score = 33.1 bits (74), Expect = 0.67 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = -3 Query: 434 TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPTGGSFHLSLT 261 T PV S+P KP+P RR + SL P +WE VS LPT + Sbjct: 824 TKPVKSLPERKPVPAPRRKVGSDCGSPVSLGGDVPNSWEDLAVSSPFDLPTPPEPATPSS 883 Query: 260 VLLRYRSPRSI*PCKVVLADSHGIP 186 L+ SP+ I L++ IP Sbjct: 884 ELVIVSSPQCIFRPATPLSEPAPIP 908
>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3966 Score = 33.1 bits (74), Expect = 0.67 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = -3 Query: 434 TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPT 288 T PV S+P KP+P RR + SL P +WE VS + LPT Sbjct: 824 TKPVKSLPERKPVPAPRRKVGPDCGSPVSLGGDVPNSWEDLAVSSPLDLPT 874
>CU097_HUMAN (Q9BTJ7) Protein C21orf97| Length = 228 Score = 31.2 bits (69), Expect = 2.5 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%) Frame = -3 Query: 596 GISPPNHNXXXXXXXXSRFGPLLSFIQASSWSWIDHPGS--GP*AVTIALLRLAFATAPV 423 G +PPN + GP L F+Q + W D P S GP I++L PV Sbjct: 25 GTAPPNASLSFLPIHQYTAGPFLVFVQQETHFWWDMPSSATGPLTPCISVL-------PV 77 Query: 422 GSVPLTKPLPMSRRLILQQARGQRSL------SPPTAWEL---STVSRSISL--PTG 285 + +K P ++ + RG+ ++ P T W L +S+++ L PTG Sbjct: 78 SAGTDSKGKPSVWQIGGWEQRGENAVLSFCLGIPHTTWVLPGKPVLSKTMDLASPTG 134
>RL23A_DAUCA (Q9AT35) 60S ribosomal protein L23a| Length = 154 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 561 FFNIKSVRTSA*FHPSFILVMDRSPRFGSISSDNR 457 F +K +RTS FH L DR+P++ IS+ R Sbjct: 32 FKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66
>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42| Length = 723 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 441 FRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQH 316 F G RS + P HS T ++TF +H LG QH Sbjct: 490 FPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQH 531
>FAEB_ASPNG (Q8WZI8) Feruloyl esterase B precursor (EC 3.1.1.73) (Ferulic acid| esterase B) (FAEB) (FAE-I) (Cinnamoyl esterase) (CinnAE) Length = 521 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = +1 Query: 295 SEIERETVLSSQAVGGESD---L*PRAC*RMSRRLIGSGLVKGTEPTGAVAKASLNRAIV 465 S I +E V V G D P C + RLI G GT A +NRA+ Sbjct: 243 SVIHQEIVRQCDLVDGALDGIIEDPDFCAPVIERLICDGTTNGTSCITGAQAAKVNRALS 302 Query: 466 TAYGPE 483 YGP+ Sbjct: 303 DFYGPD 308
>IF2P_HALSA (Q9HNQ2) Probable translation initiation factor IF-2| Length = 600 Score = 29.3 bits (64), Expect = 9.7 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Frame = +1 Query: 289 VGSEIERETVLSSQAVGGESDL*PRAC*RMSRRLIGSGLVKGTEPTGA---VAKASLNRA 459 VG E+ T+ + VGG L +G+VKG + G A+A NR Sbjct: 489 VGVEVVSGTLKRNTPVGGIE----------GNDLDRAGIVKGIQDQGEDVDEARAG-NRV 537 Query: 460 IVTAYGPEPG*SIHDQDEAWMKL-SRGPNRLDVEESAD 570 V+ GP G I + DE W+ L + LD E ++D Sbjct: 538 SVSIDGPTVGRDIKEGDELWVDLPEKHAKVLDQELTSD 575 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,932,017 Number of Sequences: 219361 Number of extensions: 2075088 Number of successful extensions: 4487 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4469 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)